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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015368 ID=TCONS_00015368|Name=TCONS_00015368|organism=Clytia hemisphaerica|type=transcript|length=921bp
ATGGTGGGCGTCATAAGGAGCATAGGACGATTGCTGGAAACCCGGGGCGA
GAAAGAAATGTGCCCGCTCGCAAAATGGTAGAAACAGACAcggctttctt
tcttttaaagTTCGACATACCCAAGACACGTGTGGAAACGTAAGgtGTGG
GTCAAGAACTAAAAATGGGATTCGAAAAACCAATCATCATTGATGGAAAA
GATCACTTAGTTGGTCGATTAGCTTCAACCATTGCTAAATGCTTGTTACA
AGGGCAAAAGATTGTTGTTGTCCGATGTGAAAGAATCTGCATCAGTGGAA
ACTTTTACAGAAACAAATTGAAGGTCTTAGACTACTTGCGTAAACGTATG
GCCACCAAGCCATCTCGTGGACCTTACCATTTCCGTGCACCAAGCAAATG
CTTATTCAAAGTTGTCCGTGGTATGATCCCacacaaaactaaacgaggaa
TGGAAGCCTTGAACAGATTGAAGGTCTTTGACGGTATCCCATCTCCATAT
GACAAACAAAAGAGAATGGTTGTCCCATCTGCCCTTCGTGTTTTAAAACT
CAAACCAGGACGTAAATTCTGCTATTTGGGCCGTCTCTCCCACGAAACTG
GATGGAAATATGCAGGAATTATCGACTCCTTGGAAGAAAAGCGTAAAGCC
AAATCTGCTTTATATTATCAATCCAAGAAAGAAGCCCTCAGACTCCGAGC
CCAAGCAGAAAAACAAGTGGAAGCTTAAATACATCATAATAAAAATTCGA
ATTCTACAacaaagtgtttattttctcttatttttctGGATTTGACAGCA
TTCTGTGTAATTGGTCTGACCTTTCCCATGACAAGACCAACAAGGAAGAA
TGCAACATTGATTTTCTGGCTGAATTATCCTTTGAATGCTTtaaatttca
ttcttttttcaCCCAGAAGAT Run BLAST on NCBI protein sequence of TCONS_00015368-protein >TCONS_00015368-protein ID=TCONS_00015368-protein|Name=TCONS_00015368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MGFEKPIIIDGKDHLVGRLASTIAKCLLQGQKIVVVRCERICISGNFYRN
KLKVLDYLRKRMATKPSRGPYHFRAPSKCLFKVVRGMIPHKTKRGMEALN
RLKVFDGIPSPYDKQKRMVVPSALRVLKLKPGRKFCYLGRLSHETGWKYA
GIIDSLEEKRKAKSALYYQSKKEALRLRAQAEKQVEA Run BLAST on NCBI transcript from alignment at sc0000210:425650..431056- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015368 ID=TCONS_00015368|Name=TCONS_00015368|organism=Clytia hemisphaerica|type=transcript|length=5407bp|location=Sequence derived from alignment at sc0000210:425650..431056- (Clytia hemisphaerica)
ATGGTGGGCGTCATAAGGAGCATAGGACGATTGCTGGAAACCCGGGGCGA
GAAAGAAATGTGCCCGCTCGCAAAATGGTAGAAACAGACACGGCTTTCTT
TCTTTTAAAGTTCGACATACCCAAGACACGTGTGGAAACGTAAGGTTGGT
TTTTAAATCTCTTCATAATTTGGAATCCTACATTGTTTACCTCCCAAATC
TTACTTCTGATCACCACGAACACATTAGATTTCTTAAAATTCTGTTTGAT
ACATCATTCACGGGTTAATTTGACTTTTTGAGCAATCAATTTGCCCACCC
ACAATAAGGCCTGATTTTTGACTTTGTATCACCTTTTCCTATGGTTATGA
TATGATTATCTTCCAGTTTAAATGTCAAATCGATCGTATGGATAGACCAT
ACAGTCAGTACTTGAATCTTTCATTAAAGGAATAATCAGATAATTTGAGG
TATTTGGTATCATGTGGGTTCCTTCTTCTATTTCCAAAAAAGCTCAAAAT
ATTTTCGCCTTAACTATTTTTCTAAGTTGAGATATAATATAAGTACAAGT
TTTTGCTACTTTTACAAAGAATTACAACGAAAAGAACCGTGTAAAAACCC
ATTTTTGGTAATTTCAAATTATGATATCTCGACTTTAGAAAAATGGTTAG
TTTAAAATACTTGGAGGTTTTACTCTTCTCTGGAGATCAATACTCTCAAG
ACAACAATCATAAATATCATTTCGTGTCCTCAATGGGTCTAAAAAGTGAG
TCTGTCGGTTGGTCGTTAAAGTTTTCGGGGTTTTCTTAAAATTGGTCCGA
AGCAGTTTAAAGGGACCCCTCGCTTGTTTGTGATCTTTAGGAAATCAAAG
AACATAAAACTTACTGCTAGTTCCTGTAGAGATATCGAAAAATTCCTCTG
AAAACTGTATCTCTGTCTGACTGAAACCAACACAACCGGGGCTCATTTGG
AGTTCTGAAGCCGATACCGATTCTCCATAAACCCGCAACTCGACTCCAAG
CAAAGGGTTTTTCTTAGGAGAAGAGCACGGATTCTAGACTGTTCGAACCA
GAGCTGGCCTCTACACTCGTACTGTAATTTTCCGGTGCATTTGTGTCAAC
AACTTGGTGCGACAAGAGCGCGAGAAAATTTGAAGGCCTTCAGAAGCCAT
TTGAAATTTTTGAAAGTTGAGTGAACATCAAAATTTATAATTTGTAATTA
TGGAGCGAAGAAAGAGTTTTGCGTGCTAATACTTTGGGAAGTTGCTTTTC
ATATGATTATGAAGTGAGTGTCTTGTTATCATTTTTAAAGACGTTAACTG
AGGCGATGTGTGATTAGACTGATGAAACTTTAAATGGGTGATGTCATCTC
CAGTTGCAACAATGCAATGGACCCAGTCAATATTTTCCCCATGTCTGACT
TCATCATCCATTTTGAAAAATGTTCGATAGCCAGCCAAAACTAGCGCGCG
TTTAGCGTGTTTTCAAATTATGACCTTTAAACATTGCGACCTTTGGCACA
AAATGGCACATGTAATGATAAACAAAGTTAGTACTGGGAATGTGCTAGAA
TCGCTTGTAAAAGATTGGCAATAATAAAATTTTTGAAGTGAGTGAAGGAA
ACATCGTCGACATAAAGTCCAACTAATTTATAGTCAGAAAGTCTGCTGTA
TACTATCTTCGCTTTCTGATTTGAATGATTGCGCTGCGATAGGACGTCAG
AGGGAACCCCTCGACCGTTTTCGGTCGACGCATGCGTCAACTTTTGAAAA
TAATTCTAAATTGCGCAATATCNTCGCTAATACGGCAGAAAGTATATCGA
ATAGAATGCTCTCTCATTCCCTGTGTTAAAAACAAAATAGAGAGAGTTTC
GTGGTCGCACGGCTTTTTTAAAATACCCTCTCAATATCTTGATTTTGTTT
GAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTAGTTATAAATTTAAAAAAGAGGGAATTCTGATTGGTTTT
AAATTCAAATTTGGTGTGACAGTTAATAGTTTCAGTTACATAATTTGTGG
GTTCCACTGTTTTTCCACCATCAGATTATCAAAGGCAAAAAATAGTTGAG
CTCCAGACCCTGGACTAACTAATTTACTGACACTCCGACTCAATTCTACT
CAATTTTTAAGAGTCGGTCGGTCAGGCGATGCGATACTAAGATATTTGTG
ATTGCTGCCTAACCAAAACTTACACAACATTCCATCACGAGTTGAGTCCA
TTGGATTATGACCCAGTTTGAATTTATTTACATTTTGTTTGAATCTTGTG
CCAAAAAAGCTGTTGAAAAAGTTGGACTCACGCACTTCCAATCAAAACAA
TGATATCACGCAATTTCAACAATTGTTTAATCAGCCAAAATAGAATTCTG
AGCCAAGAATAGCATCTTTATTAATACTCAGCCTACTACTGGTTTTCTGT
TAAGTCCAGTTCACACACTAAAATTATTTTGTATAGACAGTGTAGACGGA
GCCTCTCAGCTAGTTTCAGGATTGTAGAAGGTTACAGGCCAAATATCTCA
AACTATCTGATTATCCTTTTAACCAGGACTGAAAGGATCAACAAAGACTA
ACTTTTAAAAAGGGAACTATTAATTTTTCTTCAGCAAAAACATTATGAAG
AGTTTGTGATTTGCTTTGTTCAAGTTCTTGTTTCTTGCACAGAAAATTTC
ATTACTGAAGACAGCTGATATTTTTTAAAGGCAGTGGACGTCTATCTTGT
AGGTTTAGGTGTTCCATGCTGCTCTTGAGCTTTGTAGACGGCAGGATTTT
TTGCATTGTATCATGTTTAATTTTGTGATAATAAATCCTGATAATTTTGA
TCTCTGGCAAAATTGGGTATATAAAGGAGTGTGGGGCAAAAATGTATGTA
GTTTTAAGTTTACATTTTTTCTCGTCTCATTTTATTACAGTGCACTTCAG
GAAGCATGGAAAAAGGACCCTTACTGCACATACTACAGTTTGTTTACCTT
GATTGCCCCCTGGAATTACAATTTTTTCTGTGTTTATAACAAAGATCTGA
TTTTATCAAAATACTGTAATATATGAATGATTAAATTAGTGATGATAAAT
TTGAAAATTAATTTTTCAGGTGTGGGTCAAGAACTAAAAATGGGATTCGA
AAAACCAATCATCATTGATGGAAAAGATCACTTAGTTGGTCGATTAGCTT
CAACCATTGCTAAATGCTTGTTACAAGGGCAAAAGATTGTTGTTGTCCGA
TGTGAAAGAATCTGCATCAGTGGAAACTTTTACAGGTGAATTTAGCTGTT
TTGTGTCTAATAATTCTGTAATTCATGGTTTTCTATAAGATTGAATTTAT
CAGCCACTCTTTGTAGATATTTTTACTTTTCATACCATTGTGGGTCAAAA
TTGCTTAAGGGCTCTCATAAAGATAGGAATGTTATCTCCTTTTTTCAGAA
ACAAATTGAAGGTCTTAGACTACTTGCGTAAACGTATGGCCACCAAGCCA
TCTCGTGGACCTTACCATTTCCGTGCACCAAGCAAATGCTTATTCAAAGT
TGTCCGTGGTATGATCCCACACAAAACTAAACGAGGAATGGAAGCCTTGA
ACAGATTGAAGGTCTTTGACGGTATCCCATCTCCATATGACAAACAAAAG
AGAATGGTTGTCCCATCTGCCCTTCGTGTTTTAAAACTCAAACCAGGTAT
GGCCACTTAAAATCAGTGTTGCAACTTTCTCTGTCTTGGTTGANCCGTGT
TTTAAAACTCAAGCCAGGTATGGCCACTTAAAATCAGTGTTGCAACTTTC
TCTGTCTTGGTTGAATAGCTTATTAATACTCAGATTTGCGTCTAGTCACA
ACACTGCAAAATGGCAGAGTGCCAGTAAAAATTGTCTTAGTTTAACATTT
GCAACAGTTCAAAAATAACTTTTTATAAGCAAATATCATATTTCTCAACC
ATTGTCAAGTTTTTTTTGAAGGTTTTTCTTTTGGATTTTCTTTTTCTTTG
ATGTTTCAGCATTTTTTAAATCTTTTTCCAATGACTACTTTCAGGACGTA
AATTCTGCTATTTGGGCCGTCTCTCCCACGAAACTGGATGGAAATATGCA
GGAATTATCGACTCCTTGGAAGAAAAGCGTAAAGCCAAATCTGCTTTATA
TTATCAATCCAAGAAAGAAGCCCTCAGACTCCGAGCCCAAGCAGAAAAAC
AAGTGGAAGCTTAAATACATCATAATAAAAATTCGAATTCTACAACAAAG
TGTTTATTTTCTCTTATTTTTCTGGATTTGACAGCATTCTGTGTAATTGG
TCTGACCTTTCCCATGACAAGACCAACAAGGAAGAATGCAACATTGATTT
TCTGGCTGAATTATCCTTTGAATGCTTTAAATTTCATTCTTTTTTCACCC
AGAAGAT Coding sequence (CDS) from alignment at sc0000210:425650..431056- >TCONS_00015368 ID=TCONS_00015368|Name=TCONS_00015368|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000210:425650..431056- (Clytia hemisphaerica)
GACGTAAATTCTGCTATTTGGGCCGTCTCTCCCACGAAACTGGATGGAAA
TATGCAGGAATTATCGACTCCTTGGAAGAAAAGCGTAAAGCCAAATCTGC
TTTATATTATCAATCCAAGAAAGAAGCCCTCAGACTCCGAGCCCAAGCAG
AAAAACAAGTGGAAGCTTAAAAACAAATTGAAGGTCTTAGACTACTTGCG
TAAACGTATGGCCACCAAGCCATCTCGTGGACCTTACCATTTCCGTGCAC
CAAGCAAATGCTTATTCAAAGTTGTCCGTGGTATGATCCCACACAAAACT
AAACGAGGAATGGAAGCCTTGAACAGATTGAAGGTCTTTGACGGTATCCC
ATCTCCATATGACAAACAAAAGAGAATGGTTGTCCCATCTGCCCTTCGTG
TTTTAAAACTCAAACCAGATGGGATTCGAAAAACCAATCATCATTGATGG
AAAAGATCACTTAGTTGGTCGATTAGCTTCAACCATTGCTAAATGCTTGT
TACAAGGGCAAAAGATTGTTGTTGTCCGATGTGAAAGAATCTGCATCAGT
GGAAACTTTTACAGGACGTAAATTCTGCTATTTGGGCCGTCTCTCCCACG
AAACTGGATGGAAATATGCAGGAATTATCGACTCCTTGGAAGAAAAGCGT
AAAGCCAAATCTGCTTTATATTATCAATCCAAGAAAGAAGCCCTCAGACT
CCGAGCCCAAGCAGAAAAACAAGTGGAAGCTTAAAAACAAATTGAAGGTC
TTAGACTACTTGCGTAAACGTATGGCCACCAAGCCATCTCGTGGACCTTA
CCATTTCCGTGCACCAAGCAAATGCTTATTCAAAGTTGTCCGTGGTATGA
TCCCACACAAAACTAAACGAGGAATGGAAGCCTTGAACAGATTGAAGGTC
TTTGACGGTATCCCATCTCCATATGACAAACAAAAGAGAATGGTTGTCCC
ATCTGCCCTTCGTGTTTTAAAACTCAAACCAGATGGGATTCGAAAAACCA
ATCATCATTGATGGAAAAGATCACTTAGTTGGTCGATTAGCTTCAACCAT
TGCTAAATGCTTGTTACAAGGGCAAAAGATTGTTGTTGTCCGATGTGAAA
GAATCTGCATCAGTGGAAACTTTTACAGGACGTAAATTCTGCTATTTGGG
CCGTCTCTCCCACGAAACTGGATGGAAATATGCAGGAATTATCGACTCCT
TGGAAGAAAAGCGTAAAGCCAAATCTGCTTTATATTATCAATCCAAGAAA
GAAGCCCTCAGACTCCGAGCCCAAGCAGAAAAACAAGTGGAAGCTTAAAA
ACAAATTGAAGGTCTTAGACTACTTGCGTAAACGTATGGCCACCAAGCCA
TCTCGTGGACCTTACCATTTCCGTGCACCAAGCAAATGCTTATTCAAAGT
TGTCCGTGGTATGATCCCACACAAAACTAAACGAGGAATGGAAGCCTTGA
ACAGATTGAAGGTCTTTGACGGTATCCCATCTCCATATGACAAACAAAAG
AGAATGGTTGTCCCATCTGCCCTTCGTGTTTTAAAACTCAAACCAGATGG
GATTCGAAAAACCAATCATCATTGATGGAAAAGATCACTTAGTTGGTCGA
TTAGCTTCAACCATTGCTAAATGCTTGTTACAAGGGCAAAAGATTGTTGT
TGTCCGATGTGAAAGAATCTGCATCAGTGGAAACTTTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015368-exon-sc0000210-1575043694:430913..431056 | TCONS_00015368-exon-sc0000210-1575043694:430913..431056 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1575043694:426772..426937 | TCONS_00015368-exon-sc0000210-1575043694:426772..426937 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1575043694:426361..426608 | TCONS_00015368-exon-sc0000210-1575043694:426361..426608 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1575043694:425650..426012 | TCONS_00015368-exon-sc0000210-1575043694:425650..426012 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1510915933:430913..431056 | TCONS_00015368-exon-sc0000210-1510915933:430913..431056 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1510915933:426772..426937 | TCONS_00015368-exon-sc0000210-1510915933:426772..426937 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1510915933:426361..426608 | TCONS_00015368-exon-sc0000210-1510915933:426361..426608 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1510915933:425650..426012 | TCONS_00015368-exon-sc0000210-1510915933:425650..426012 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1491911889:430913..431056 | TCONS_00015368-exon-sc0000210-1491911889:430913..431056 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1491911889:426772..426937 | TCONS_00015368-exon-sc0000210-1491911889:426772..426937 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1491911889:426361..426608 | TCONS_00015368-exon-sc0000210-1491911889:426361..426608 | Clytia hemisphaerica | exon |
| TCONS_00015368-exon-sc0000210-1491911889:425650..426012 | TCONS_00015368-exon-sc0000210-1491911889:425650..426012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000210 | supercontig | sc0000210:425650..431056 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
| GO:0015934 | large ribosomal subunit |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0015934 |
large ribosomal subunit |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00015368 vs. Swiss-Prot (Human)
Match: RL13A (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 264.233 bits (674), Expect = 1.723e-87 Identity = 121/180 (67.22%), Postives = 151/180 (83.89%), Query Frame = 3
Query: 183 IIIDGKDHLVGRLASTIAKCLLQGQKIVVVRCERICISGNFYRNKLKVLDYLRKRMATKPSRGPYHFRAPSKCLFKVVRGMIPHKTKRGMEALNRLKVFDGIPSPYDKQKRMVVPSALRVLKLKPGRKFCYLGRLSHETGWKYAGIIDSLEEKRKAKSALYYQSKKEALRLRAQAEKQVE 722
+++DG+ HL+GRLA+ +AK +L G+K+VVVRCE I ISGNFYRNKLK L +LRKRM T PSRGPYHFRAPS+ ++ VRGM+PHKTKRG AL+RLKVFDGIP PYDK+KRMVVP+AL+V++LKP RKF YLGRL+HE GWKY + +LEEKRK K+ ++Y+ KK+ +RLR QAEK VE
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
The following BLAST results are available for this feature:
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