TCONS_00015368-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015368-protein
Unique NameTCONS_00015368-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015368-protein ID=TCONS_00015368-protein|Name=TCONS_00015368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MGFEKPIIIDGKDHLVGRLASTIAKCLLQGQKIVVVRCERICISGNFYRN
KLKVLDYLRKRMATKPSRGPYHFRAPSKCLFKVVRGMIPHKTKRGMEALN
RLKVFDGIPSPYDKQKRMVVPSALRVLKLKPGRKFCYLGRLSHETGWKYA
GIIDSLEEKRKAKSALYYQSKKEALRLRAQAEKQVEA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008591XLOC_008591Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015368TCONS_00015368Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005822Ribosomal_L13
IPR005755Ribosomal_L13_euk/arc
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005822Ribosomal protein L13GENE3D3.90.1180.10coord: 6..149
e-value: 2.0E-60
score: 202.9
IPR005822Ribosomal protein L13PIRSFPIRSF002181RPL13p_RPL13Aa_RPL16e_RPL13ocoord: 3..154
e-value: 2.6E-40
score: 135.8
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 8..116
e-value: 2.9E-8
score: 33.9
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 6..130
score: 18.306
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 7..108
e-value: 3.74638E-36
score: 122.998
IPR005822Ribosomal protein L13SUPERFAMILY52161Ribosomal protein L13coord: 7..149
IPR005755Ribosomal protein L13, eukaryotic/archaealTIGRFAMTIGR01077TIGR01077coord: 7..149
e-value: 1.3E-54
score: 182.3

Blast
[Close]
BLAST of TCONS_00015368-protein vs. Swiss-Prot (Human)
Match: RL13A (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 6.628e-91
Identity = 121/180 (67.22%), Postives = 151/180 (83.89%), Query Frame = 0 
Query:    7 IIIDGKDHLVGRLASTIAKCLLQGQKIVVVRCERICISGNFYRNKLKVLDYLRKRMATKPSRGPYHFRAPSKCLFKVVRGMIPHKTKRGMEALNRLKVFDGIPSPYDKQKRMVVPSALRVLKLKPGRKFCYLGRLSHETGWKYAGIIDSLEEKRKAKSALYYQSKKEALRLRAQAEKQVE 186
            +++DG+ HL+GRLA+ +AK +L G+K+VVVRCE I ISGNFYRNKLK L +LRKRM T PSRGPYHFRAPS+  ++ VRGM+PHKTKRG  AL+RLKVFDGIP PYDK+KRMVVP+AL+V++LKP RKF YLGRL+HE GWKY  +  +LEEKRK K+ ++Y+ KK+ +RLR QAEK VE
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
The following BLAST results are available for this feature:
BLAST of TCONS_00015368-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL13A6.628e-9167.2260S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
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