TCONS_00015359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015359
Unique NameTCONS_00015359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015359 ID=TCONS_00015359|Name=TCONS_00015359|organism=Clytia hemisphaerica|type=transcript|length=574bp
GTCAAACCAACAACCAAACTTTCTCAAACCTCGACCAACGTCAAAGCTGG
ACAATCTCTTACCATCACTTGCCAAGTTGAAGGCTTCCCTAAACCTCGAG
TCCAATGGCAAAAGAATGATGACGTTTTCAGAGTTGACGGGTTACGAATC
ACTCGTACTGACAGCGCTATTACTTTCAAGAGGCTGGTAACGAGTGATTC
AGGGAAATATGATTGTATAGCTTTCAATGCTGCAGGATCATCGACCTCAA
CTGCTAATCTGAAAGTTGCTGCAGATGAGAACGCCAACGAATCCATTTCA
ACAGGTGAAGAATCCTCAACAAGTACTGATGACAATAACTGTCAAGATCA
ACAGAATACTTGCAATCTTGCTAAACAAATGAAACTTTGTGAATTTCCTC
ACTATGAGAAACGTGTCTGTTGCAAGACCTGCCGCAAACTTGCAAACGAA
GTCATCAAAAAGTCCCGATAGCTACATTATATAATTTCTAAGACTTTTTC
GATCTAGTGTAGAAAATGTTTTATCTAATTTGAGATAATTTGAGTCGAAA
TTGGACGGGTTATAAAAGACTGGA
Run BLAST on NCBI

protein sequence of TCONS_00015359-protein

>TCONS_00015359-protein ID=TCONS_00015359-protein|Name=TCONS_00015359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
VKPTTKLSQTSTNVKAGQSLTITCQVEGFPKPRVQWQKNDDVFRVDGLRI
TRTDSAITFKRLVTSDSGKYDCIAFNAAGSSTSTANLKVAADENANESIS
TGEESSTSTDDNNCQDQQNTCNLAKQMKLCEFPHYEKRVCCKTCRKLANE
VIKKSR
Run BLAST on NCBI

transcript from alignment at sc0000210:210294..211135-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015359 ID=TCONS_00015359|Name=TCONS_00015359|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0000210:210294..211135- (Clytia hemisphaerica)
GTCAAACCAACAACCAAACTTTCTCAAACCTCGACCAACGTCAAAGCTGG
ACAATCTCTTACCATCACTTGCCAAGTTGAAGGCTTCCCTAAACCTCGAG
TCCAATGGCAAAAGAATGATGACGTTTTCAGAGTTGACGGGTTACGAATC
ACTCGTACTGACAGCGCTATTACTTTCAAGAGGCTGGTAACGAGTGATTC
AGGGAAATATGATTGTATAGCTTTCAATGCTGCAGGATCATCGACCTCAA
CTGCTAATCTGAAAGTTGCTGCAGATGAGAACGGTGAGCTTGCTTTCTCG
ACCAATCACATCCAAGTACCCTTTTACGTCAGCTATATTTTCACCTCAGA
CACAGAATAATACACCAATAAAGGACCAAATAAGTAGGTCATTTTGGGGT
AGAGACTGATTTTCTTTGCTGAGGATACCTCAGACTTCAAAACTCTACAA
ATTTCCTTAAACTGGATATTGAAATCTGTAAGCTCTCTAAGTTCTATACC
TAGGTGCTTACGCAAAGTTTCTATGATTACTTTTGATTCTGTCTTTTTTA
GCCAACGAATCCATTTCAACAGGTGAAGAATCCTCAACAAGTACTGATGA
CAATAACTGTCAAGATCAACAGAATACTTGCAATCTTGCTAAACAAATGA
AACTTTGTGAATTTCCTCACTATGAGAAACGTGTCTGTTGCAAGACCTGC
CGCAAACTTGCAAACGAAGTCATCAAAAAGTCCCGATAGCTACATTATAT
AATTTCTAAGACTTTTTCGATCTAGTGTAGAAAATGTTTTATCTAATTTG
AGATAATTTGAGTCGAAATTGGACGGGTTATAAAAGACTGGA

Coding sequence (CDS) from alignment at sc0000210:210294..211135-

>TCONS_00015359 ID=TCONS_00015359|Name=TCONS_00015359|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000210:210294..211135- (Clytia hemisphaerica)
CCAACGAATCCATTTCAACAGGTGAAGAATCCTCAACAAGTACTGATGAC
AATAACTGTCAAGATCAACAGAATACTTGCAATCTTGCTAAACAAATGAA
ACTTTGTGAATTTCCTCACTATGAGAAACGTGTCTGTTGCAAGACCTGCC
GCAAACTTGCAAACGAAGTCATCAAAAAGTCCCGATAGGTCAAACCAACA
ACCAAACTTTCTCAAACCTCGACCAACGTCAAAGCTGGACAATCTCTTAC
CATCACTTGCCAAGTTGAAGGCTTCCCTAAACCTCGAGTCCAATGGCAAA
AGAATGATGACGTTTTCAGAGTTGACGGGTTACGAATCACTCGTACTGAC
AGCGCTATTACTTTCAAGAGGCTGGTAACGAGTGATTCAGGGAAATATGA
TTGTATAGCTTTCAATGCTGCAGGATCATCGACCTCAACTGCTAATCTGA
AAGTTGCTGCAGATGAGAACGCCAACGAATCCATTTCAACAGGTGAAGAA
TCCTCAACAAGTACTGATGACAATAACTGTCAAGATCAACAGAATACTTG
CAATCTTGCTAAACAAATGAAACTTTGTGAATTTCCTCACTATGAGAAAC
GTGTCTGTTGCAAGACCTGCCGCAAACTTGCAAACGAAGTCATCAAAAAG
TCCCGATAGGTCAAACCAACAACCAAACTTTCTCAAACCTCGACCAACGT
CAAAGCTGGACAATCTCTTACCATCACTTGCCAAGTTGAAGGCTTCCCTA
AACCTCGAGTCCAATGGCAAAAGAATGATGACGTTTTCAGAGTTGACGGG
TTACGAATCACTCGTACTGACAGCGCTATTACTTTCAAGAGGCTGGTAAC
GAGTGATTCAGGGAAATATGATTGTATAGCTTTCAATGCTGCAGGATCAT
CGACCTCAACTGCTAATCTGAAAGTTGCTGCAGATGAGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008585XLOC_008585Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015359-proteinTCONS_00015359-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015359-exon-sc0000210-1575043694:210853..211135TCONS_00015359-exon-sc0000210-1575043694:210853..211135Clytia hemisphaericaexon
TCONS_00015359-exon-sc0000210-1575043694:210294..210584TCONS_00015359-exon-sc0000210-1575043694:210294..210584Clytia hemisphaericaexon
TCONS_00015359-exon-sc0000210-1510915933:210853..211135TCONS_00015359-exon-sc0000210-1510915933:210853..211135Clytia hemisphaericaexon
TCONS_00015359-exon-sc0000210-1510915933:210294..210584TCONS_00015359-exon-sc0000210-1510915933:210294..210584Clytia hemisphaericaexon
TCONS_00015359-exon-sc0000210-1491911889:210853..211135TCONS_00015359-exon-sc0000210-1491911889:210853..211135Clytia hemisphaericaexon
TCONS_00015359-exon-sc0000210-1491911889:210294..210584TCONS_00015359-exon-sc0000210-1491911889:210294..210584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:210294..211135 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.533865	0.299356	0.307384	0.116031	0.303852	0.115907	2.16126	2.6438	2.98643	3.00495	3.51301	1.11971	6.4144	6.29483	7.91426	11.0543	10.0035	8.58313	3.42542	2.17169	2.3144	2.71182	1.13829	2.9045	6.73599	5.759	0.339049	0.43383	2.14505	1.03967
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR013098Ig_I-set
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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