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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015327 ID=TCONS_00015327|Name=TCONS_00015327|organism=Clytia hemisphaerica|type=transcript|length=4190bpRun BLAST on NCBI protein sequence of TCONS_00015327-protein >TCONS_00015327-protein ID=TCONS_00015327-protein|Name=TCONS_00015327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=897bp MTNCCSSLWRGWVRICSAINGFFERSFVKWSGIVFDHPWKVILSGLLIALRun BLAST on NCBI transcript from alignment at sc0000210:260303..275562+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015327 ID=TCONS_00015327|Name=TCONS_00015327|organism=Clytia hemisphaerica|type=transcript|length=15260bp|location=Sequence derived from alignment at sc0000210:260303..275562+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000210:260303..275562+ >TCONS_00015327 ID=TCONS_00015327|Name=TCONS_00015327|organism=Clytia hemisphaerica|type=CDS|length=18858bp|location=Sequence derived from alignment at sc0000210:260303..275562+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015327 vs. Swiss-Prot (Human)
Match: PTHD3 (Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1 SV=3) HSP 1 Score: 112.464 bits (280), Expect = 5.589e-25 Identity = 111/381 (29.13%), Postives = 180/381 (47.24%), Query Frame = 2
Query: 1013 LMCTFATVVLFRLRNRVNGHVTVGFAGIGCIALGIGSGFGMVMLSGQYFVAFVGTLPFLVLGVGIDDMFIILDALD--SLPSDFTGKNRLQKTMAKVGASVTMTTVTDVIAFAISSSTDFPAIRYFCMYALTSILFAYLLIMTVFLAALALDIKR-------IEVGNWDW-----FCCKKQKDNNPWSEEDMNTLSKTVMKKWAEFLMKTPVRIXXXXXXXXXXAAGIYGTTQLAEKFDIRQLAPDGSYFIDYLDNERMHYP-VGFQVSIINDDENFDYTNPRLQGEYNYLSNICKENSYMKKT-TVNWLQA---FLESNEYKSNPNMTFYQRLGLFLKEFPEYGRDIKWHTENEQRIRASKIQCQDLDTDSWDFRKKAML 2098
L+ FA FR N F I L + SGFG+++ G FV V PFL+LGVG+DDMFI++ A +L D + R+ +K S+T+TT+T+++A + F +++ FC+Y ++LF Y +T F A +ALD KR ++ + W FCC D++ +S + FL ++ + VVF+ ++ + + IYG + E D+R LA D SY Y + E ++ G +V +I + DY + ++ + + I ++N Y+ K T WL A +L+ N N TF + FL FP + DI + NE IQ D+ + + +KK +L
Sbjct: 393 LIILFAVTSCFRFDCIRNKMCVAAFGVISAF-LAVVSGFGLLLHIGVPFVIIVANSPFLILGVGVDDMFIMISAWHKTNLADDI--RERMSNVYSKAAVSITITTITNILALYTGIMSSFRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKREVVCLCWLKKADPKWPSFKKFCCFPFGSVPDEHGTDIHPISLFFRDYFGPFLTRSESKYFVVFIYVLYIISSIYGCFHVQEGLDLRNLASDDSYITPYFNVEENYFSDYGPRVMVIV-TKKVDYWDKDVRQKLENCTKIFEKNVYVDKNLTEFWLDAYVQYLKGNSQDPNEKNTFMNNIPDFLSNFPNFQHDINISSSNEIISSRGFIQTTDVSSSA---KKKILL 766 The following BLAST results are available for this feature:
BLAST of TCONS_00015327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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