TCONS_00015305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015305
Unique NameTCONS_00015305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015305 ID=TCONS_00015305|Name=TCONS_00015305|organism=Clytia hemisphaerica|type=transcript|length=477bp
CCCGGCTTCAGATTCCATTGCATCCTTCGTCGATTTTCCTAGAATCGTCT
ACACATTATCACTGAAAAAGGAAATAATTCAGGAGGCGGGATGAATTTGA
AAACGAGTTTAGTTCGGGTAAACAGTGGCGTTTACAGTGGCGAAGGtgtt
tgttccaaactctaccgccactattttttcccgtaaaccgccctgacgcc
ctgactCAGCGCATACAGTAtatattttcccgcgtttactgaccctcATA
AAACTAACATGAAAATCTTGAATCTATAATCTACTaaaattcttaacttt
taacCGATTCTCAAACAGAAGGttcttttagatttttgtcGAATCTTTCT
TGTGTAAAAGAAACATAGCCTTTCGAAAGTGGGTCCATTATTCAGCCATT
TTGACGTACTTTAGAGAGTAGCAACCCCTGAAATTGTTAATAGCAACGGC
AACAACGATTCTTCTCAGCATTCAATG
Run BLAST on NCBI

transcript from alignment at sc0000208:178397..178873

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015305 ID=TCONS_00015305|Name=TCONS_00015305|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0000208:178397..178873 (Clytia hemisphaerica)
CATTGAATGCTGAGAAGAATCGTTGTTGCCGTTGCTATTAACAATTTCAG
GGGTTGCTACTCTCTAAAGTACGTCAAAATGGCTGAATAATGGACCCACT
TTCGAAAGGCTATGTTTCTTTTACACAAGAAAGATTCgacaaaaatctaa
aagaaCCTTCTGTTTGAGAATCGgttaaaagttaagaattttAGTAGATT
ATAGATTCAAGATTTTCATGTTAGTTTTATgagggtcagtaaacgcggga
aaatataTACTGTATGCGCTGagtcagggcgtcagggcggtttacgggaa
aaaatagtggcggtagagtttggaacaaacaCCTTCGCCACTGTAAACGC
CACTGTTTACCCGAACTAAACTCGTTTTCAAATTCATCCCGCCTCCTGAA
TTATTTCCTTTTTCAGTGATAATGTGTAGACGATTCTAGGAAAATCGACG
AAGGATGCAATGGAATCTGAAGCCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008555XLOC_008555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015305-exon-sc0000208-1491911889:178397..178873TCONS_00015305-exon-sc0000208-1491911889:178397..178873Clytia hemisphaericaexon
TCONS_00015305-exon-sc0000208-1510915933:178397..178873TCONS_00015305-exon-sc0000208-1510915933:178397..178873Clytia hemisphaericaexon
TCONS_00015305-exon-sc0000208-1575043694:178397..178873TCONS_00015305-exon-sc0000208-1575043694:178397..178873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:178397..178873 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13238	0.369212	0	0.26715	0.535564	0	0	0.724813	0.74605	0.552709	0.134118	0.352656	0.447196	0.182864	0.375848	0.602178	0.397508	0.611149	0.56289	0.73628	2.08015	2.06019	0.303568	0.827962	2.41621	2.72097	0	0	0.146931	0.299399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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