|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015265 ID=TCONS_00015265|Name=TCONS_00015265|organism=Clytia hemisphaerica|type=transcript|length=2667bpRun BLAST on NCBI protein sequence of TCONS_00015265-protein >TCONS_00015265-protein ID=TCONS_00015265-protein|Name=TCONS_00015265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=844bp MDKSEEKDLRNAVKNAKTAFYKDKGKQKQVFRREARRNKRVEKKAKHHQFRun BLAST on NCBI transcript from alignment at sc0000208:196246..216869+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015265 ID=TCONS_00015265|Name=TCONS_00015265|organism=Clytia hemisphaerica|type=transcript|length=20624bp|location=Sequence derived from alignment at sc0000208:196246..216869+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000208:196246..216869+ >TCONS_00015265 ID=TCONS_00015265|Name=TCONS_00015265|organism=Clytia hemisphaerica|type=CDS|length=53235bp|location=Sequence derived from alignment at sc0000208:196246..216869+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015265 vs. Swiss-Prot (Human)
Match: NOM1 (Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1) HSP 1 Score: 446.817 bits (1148), Expect = 5.348e-142 Identity = 236/539 (43.78%), Postives = 354/539 (65.68%), Query Frame = 2
Query: 983 SGGKYIPPALRKLQSKGEDEEKVKIERLKKQLKGLLNRVSESTLPGITSEIALLYEKNSRYTMNELMFQAICDSCVAEALTPHRLMIQLMVIVASLHKTSQCEIGSYFLQMLVEKFNTLHKVDEMEYNLDKKCANVLYLILTLYNLKVVESLLIYDIVRRLMSRFNEQDIELILMILKTCGPDMRKDDPFALKEIILAIQAKS--MASEAEDQSRVKFMLETINALKNNNMRKVPQYDPTLIEDGRKIYKAITRGRETMNSGSQLKVSLEDLLNARDKGKWWVVGSAWAGR----GPNKTPEEKVVDEGGIQVPDASAKLLEKAKKQRMNTELRKNIFCILMTSEDYLDAFXXXXXXXXXXXXAREIIHVVLDCCLQEKTYNPFYAHLADQFCGHSHSNKITLQYSLWDRFKTLSTLSKHTCNNMAHLMSHLIASNSLTLGVLKVVSFGMLDKQSIRFFTSFFKILLLQYPESSIKSAFMKIASNTKLASLREGIKIFLRSFI-----APRKDEDTNIAMKDRKMNELIDLVESALDGR 2566
SG KYIPP +R+ + + ++K ++ERLKK +KGLLNR+SE + I+ ++ LY +SR MN+ + A+ +CV + P RLM++ +++V+ LH T E+G++FL+ +V KF+ ++K + K+C N+ +I LYN VV+SLLI+DI+++L+ F E+DIELIL++LK G +RKDD +LKE+I Q K+ SE +DQ+R++FMLET+ ALKNN+MRK+P YDP +E RK+ +A+ R + S +QL+VS + +L+A G+WW+VGSAW+G + T +K + V S+K+LE A+KQRMNT++R+NIFC +MTSED+LDAFEKL KL LK++Q REIIHV++DCCLQEKTYNPFYA LA +FC + ++T Q+S+WD+F+ L L +N+ HL++HL+ + SL+L +LKVV F LDK +RF ILL++ + F +++ N KL LREG+K+F+ F+ A R ++ N+ + E DL L G+
Sbjct: 334 SGEKYIPPHVRQAEETVDFKKKEELERLKKHVKGLLNRLSEPNMASISGQLEELYMAHSRKDMNDTLTSALMGACVTASAMPSRLMMEHVLLVSILHHTVGIEVGAHFLEAVVRKFDAIYKYG----SEGKECDNLFTVIAHLYNFHVVQSLLIFDILKKLIGTFTEKDIELILLMLKNVGFSLRKDDALSLKELITEAQTKASGAGSEFQDQTRIRFMLETMLALKNNDMRKIPGYDPEPVEKLRKLQRALVRNAGS-GSETQLRVSWDSVLSAEQTGRWWIVGSAWSGAPMIDNSHHTHLQKQL------VGTVSSKILELARKQRMNTDIRRNIFCTIMTSEDFLDAFEKLLKLGLKDQQEREIIHVLMDCCLQEKTYNPFYAFLASKFCEYERRFQMTFQFSIWDKFRDLENLPATNFSNLVHLVAHLLKTKSLSLSILKVVEFSELDKPRVRFLRKVLSILLMETEVEDLSLIFTRVSDNPKLGVLREGLKLFISHFLLKNAQAHRSADEANV------LREKADLATKCLQGK 855 The following BLAST results are available for this feature:
BLAST of TCONS_00015265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.