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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015257 ID=TCONS_00015257|Name=TCONS_00015257|organism=Clytia hemisphaerica|type=transcript|length=2805bpRun BLAST on NCBI protein sequence of TCONS_00015257-protein >TCONS_00015257-protein ID=TCONS_00015257-protein|Name=TCONS_00015257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=817bp MCHCLMDRKKLVNALLLVALVIFIGQNVHGQAEEDESRCIKAANCDECMRRun BLAST on NCBI transcript from alignment at sc0000208:82991..101367+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015257 ID=TCONS_00015257|Name=TCONS_00015257|organism=Clytia hemisphaerica|type=transcript|length=18377bp|location=Sequence derived from alignment at sc0000208:82991..101367+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000208:82991..101367+ >TCONS_00015257 ID=TCONS_00015257|Name=TCONS_00015257|organism=Clytia hemisphaerica|type=CDS|length=56442bp|location=Sequence derived from alignment at sc0000208:82991..101367+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00015257 vs. Swiss-Prot (Human)
Match: ITB3 (Integrin beta-3 OS=Homo sapiens GN=ITGB3 PE=1 SV=2) HSP 1 Score: 374.015 bits (959), Expect = 7.058e-115 Identity = 256/802 (31.92%), Postives = 406/802 (50.62%), Query Frame = 3
Query: 258 AANCDECMRIGSECHWCEDGNFTLGGRLNRPRCGEINVLTKDKC---------QNIRYLNDTKHEITDNTPYDS--VIQVRPQKLTVALRAGNAKKFKVNIKPAEDFPVDIYFLNDLSFSMKEDLANLRKLSNKIAEEIGTITKNYRLGFGAFIDKPTQPFIFY-PQDFPEFPCTRKETELGSCQFKRPIFGYSHIFDFSANTTAFQEAVETIDVSADIDDAEGCFDGLMQAVVCESVLKWKARGRARRLIIMATDAEPKLAGDGKLANILKPNDGKCYLKERLVSGKSEMYYYKTLDMDYPSISQLRRVMKEAGVAPILAVSKPFIDQYKKIAEHWNELGSAAEILTEDSTNIVEVVRDNYQRIATTVAL-TDEAPPYLEISYKVDRTTCTTPARVVSDSVCADVKLNKEIVFDVEIKLKECPNPLPEDPSVKIRIAGFGE-VTVDIEYLCECNC--EKEPLSAKCNK-KGDYKCGICDCTEGFFGSLCQCDASKVSRNDTSKCIDPKNSKQICSGDGQCICGVCECTPKQSPRVISGEFCQCKNYGCPKYLGSECGSAETEKRGECECGKCRCVPPYKGINCGEIECVTQQKLTCRKGGIECSGHGXXXXXXXXXXXXAGYAGENCEKCITQDCKCATIDPSCLKC-----------HVTNSTCAEELNCDQHVFILSDNSTFPISCNVKYNDDLCTATYNFTREYLHNTSMVWEYVTGCTVAVSQGDDTGTXXXXXXXXXXXXXXXXXXXXXWKLLVTLHDKKEYAKFERAQNDSSWEKDGNPIYREPNQQFVNPAYAG 2579
++C +C+ + C WC D LG PRC L KD C R L D ++D DS V QV PQ++ + LR ++K F + ++ ED+PVDIY+L DLS+SMK+DL +++ L K+A ++ +T N R+GFGAF+DKP P+++ P + E PC +T P+FGY H+ + T F E V+ VS + D EG FD +MQA VC+ + W R A L++ TDA+ +A DG+LA I++PNDG+C++ S+ +Y + MDYPS+ + + + + I AV++ ++ Y+ +E G+ +L+ DS+N+++++ D Y +I + V L + P L +S+ TC + C +K+ + F +E K++ CP ++ S I+ GF + + V + + C+C C + EP S +CN G ++CG+C C G+ GS C+C + +C P+ + +CS G+C+CG C C + I+G++C+C ++ C +Y G C G+C CG C C + G C C T+ G+ CSG GKC C Y G+ CEKC T C T C++C + N C +E+ + V L D ++C K N+D C + + Y ++ YV +G D L ++L ++ ILL+GL LL+WKLL+T+HD+KE+AKFE + + W+ NP+Y+E F N Y G
Sbjct: 36 VSSCQQCLAVSPMCAWCSDEALPLGS----PRCDLKENLLKDNCAPESIEFPVSEARVLED--RPLSDKGSGDSSQVTQVSPQRIALRLRPDDSKNFSIQVRQVEDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTC------LPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW--RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHV-------GSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIP--GTTVGVLSMDSSNVLQLIVDAYGKIRSKVELEVRDLPEELSLSFNA---TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQ--EKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDEC-SPREGQPVCSQRGECLCGQCVCHSSDFGK-ITGKYCECDDFSCVRYKGEMCSG-----HGQCSCGDCLCDSDWTGYYCN---CTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSY-GDTCEKCPTCPDAC-TFKKECVECKKFDRGALHDENTCNRYCRDEI---ESVKELKDTGKDAVNCTYK-NEDDCVVRFQY---YEDSSGKSILYVVE-EPECPKGPD--ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFTNITYRG 787 The following BLAST results are available for this feature:
BLAST of TCONS_00015257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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