TCONS_00015257-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015257-protein
Unique NameTCONS_00015257-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015257-protein ID=TCONS_00015257-protein|Name=TCONS_00015257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=817bp
MCHCLMDRKKLVNALLLVALVIFIGQNVHGQAEEDESRCIKAANCDECMR
IGSECHWCEDGNFTLGGRLNRPRCGEINVLTKDKCQNIRYLNDTKHEITD
NTPYDSVIQVRPQKLTVALRAGNAKKFKVNIKPAEDFPVDIYFLNDLSFS
MKEDLANLRKLSNKIAEEIGTITKNYRLGFGAFIDKPTQPFIFYPQDFPE
FPCTRKETELGSCQFKRPIFGYSHIFDFSANTTAFQEAVETIDVSADIDD
AEGCFDGLMQAVVCESVLKWKARGRARRLIIMATDAEPKLAGDGKLANIL
KPNDGKCYLKERLVSGKSEMYYYKTLDMDYPSISQLRRVMKEAGVAPILA
VSKPFIDQYKKIAEHWNELGSAAEILTEDSTNIVEVVRDNYQRIATTVAL
TDEAPPYLEISYKVDRTTCTTPARVVSDSVCADVKLNKEIVFDVEIKLKE
CPNPLPEDPSVKIRIAGFGEVTVDIEYLCECNCEKEPLSAKCNKKGDYKC
GICDCTEGFFGSLCQCDASKVSRNDTSKCIDPKNSKQICSGDGQCICGVC
ECTPKQSPRVISGEFCQCKNYGCPKYLGSECGSAETEKRGECECGKCRCV
PPYKGINCGEIECVTQQKLTCRKGGIECSGHGKCLDNCKDCKCDAGYAGE
NCEKCITQDCKCATIDPSCLKCHVTNSTCAEELNCDQHVFILSDNSTFPI
SCNVKYNDDLCTATYNFTREYLHNTSMVWEYVTGCTVAVSQGDDTGTLAI
ILGIIAGILLLGLLLLLLWKLLVTLHDKKEYAKFERAQNDSSWEKDGNPI
YREPNQQFVNPAYAGES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008532XLOC_008532Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015257TCONS_00015257Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015812Integrin_bsu
IPR014836Integrin_bsu_cyt_dom
IPR002369Integrin_bsu_VWA
IPR033760Integrin_beta_N
IPR013032EGF-like_CS
IPR002035VWF_A
IPR032695Integrin_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015812Integrin beta subunitPRINTSPR01186INTEGRINBcoord: 137..155
score: 66.08
coord: 745..762
score: 38.48
coord: 249..271
score: 43.16
coord: 367..391
score: 32.15
coord: 539..552
score: 62.7
coord: 109..122
score: 48.15
coord: 762..780
score: 59.65
coord: 42..58
score: 39.65
coord: 177..196
score: 46.67
coord: 797..807
score: 33.0
IPR015812Integrin beta subunitPIRSFPIRSF002512Integrin_Bcoord: 8..817
e-value: 2.6E-205
score: 681.9
IPR015812Integrin beta subunitPROSITEPS00243INTEGRIN_BETAcoord: 539..552
IPR014836Integrin beta subunit, cytoplasmic domainSMARTSM01241Integrin_b_cyt_2coord: 770..816
e-value: 3.1E-16
score: 70.0
IPR014836Integrin beta subunit, cytoplasmic domainPFAMPF08725Integrin_b_cytcoord: 770..813
e-value: 1.1E-16
score: 60.1
IPR014836Integrin beta subunit, cytoplasmic domainGENE3D1.20.5.630coord: 777..814
e-value: 1.0E-16
score: 59.9
IPR002369Integrin beta subunit, VWA domainSMARTSM00187INB_2coord: 44..481
e-value: 2.7E-108
score: 375.8
IPR002369Integrin beta subunit, VWA domainPFAMPF00362Integrin_betacoord: 134..397
e-value: 2.1E-73
score: 247.0
NoneNo IPR availableGENE3D2.10.25.10coord: 569..611
e-value: 0.05
score: 13.4
coord: 525..568
e-value: 4.3E-6
score: 26.4
coord: 490..517
e-value: 3.1E-8
score: 33.3
NoneNo IPR availableGENE3D1.20.5.100coord: 744..776
e-value: 6.2E-14
score: 51.0
NoneNo IPR availableGENE3D2.60.40.1510coord: 612..653
e-value: 0.0016
score: 18.2
NoneNo IPR availableGENE3D2.60.40.1510coord: 340..489
e-value: 3.4E-31
score: 108.0
NoneNo IPR availableGENE3D2.60.40.1510coord: 98..248
e-value: 6.6E-23
score: 81.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 787..817
NoneNo IPR availableSUPERFAMILY103575Plexin repeatcoord: 35..87
IPR033760Integrin beta N-terminalPFAMPF17205PSI_integrincoord: 38..86
e-value: 1.0E-8
score: 34.7
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 641..652
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 134..394
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 409..485

Blast
[Close]
BLAST of TCONS_00015257-protein vs. Swiss-Prot (Human)
Match: ITB2 (Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2)

HSP 1 Score: 397.897 bits (1021), Expect = 7.834e-127
Identity = 261/795 (32.83%), Postives = 394/795 (49.56%), Query Frame = 0 
Query:   40 IKAANCDECMRIGSECHWCEDGNFTLGGRLNRPRCGEINVLTKDKCQNIRYLNDTKHEITDNTPYDSVIQVRPQKLTVALRAGNAKKFKVNIKPAEDFPVDIYFLNDLSFSMKEDLANLRKLSNKIAEEIGTITKNYRLGFGAFIDKPTQPFIFYPQDFPEFPCTRKETELGSCQFKRPIFGYSHIFDFSANTTAFQEAVETIDVSADIDDAEGCFDGLMQAVVCESVLKWKARGRARRLIIMATDAEPKLAGDGKLANILKPNDGKCYLKERLVSGKSEMYYYKTLDMDYPSISQLRRVMKEAGVAPILAVSKPFIDQYKKIAEHWNELGSAAEILTEDSTNIVEVVRDNYQRIATTVALTDEA-PPYLEISYKVDRTTCTTPARVVSDSVCADVKLNKEIVFDVEIKLKECPNPLPEDPSVKIRIAGFGE-VTVDIEYLCECNCEKEPLS-AKCNKKGDYKCGICDCTEGFFGSLCQCDASKVSRNDTSKCIDPKNSKQICSGDGQCICGVCECTPKQSP-RVISGEFCQCKNYGCPKYLGSECGSAETEKRGECECGKCRCVPPYKGINCGEIECVTQQKLTCRKGGIECSGHGKCLDNCKDCKCDAGYAGENCEKCITQDCKCATIDPSCLKCHVTNSTCAEELNCDQHVF-----------ILSDNSTFPISCNVKYNDDLCTATYNFTRE-----YLHNTSMVWEYVTGCTVAVSQGDDTGTLAIILGIIAGILLLGLLLLLLWKLLVTLHDKKEYAKFERAQNDSSWEKDGNPIYREPNQQFVNPAYA 814
             K ++C EC+  G  C WC+  NFT  G  +  RC     L    C     ++ T    T         Q+ PQK+T+ LR G A  F V  + A+ +P+D+Y+L DLS+SM +DL N++KL   +   +  IT++ R+GFG+F+DK   PF+    D    PC  KE E   CQ   P F + H+   + N+  FQ  V    +S ++D  EG  D +MQ   C   + W+      RL++ ATD     AGDGKL  IL PNDG+C+L++ L        Y ++ + DYPS+ QL   + E  + PI AV+   +  Y+K+ E   +  SA   L+EDS+N+V+++++ Y ++++ V L   A P  L+++Y    +   T  R      C  V++N  I F V++   EC     ++ S  IR  GF + VTV +   CEC C  +    + C+ KG  +CGIC C  G+ G  C+C     S  +        N+  ICSG G C+CG C C     P ++I G++C+C    C +Y G  CG      RG C CGKCRC P ++G  C + E  T+  L  R+  +ECSG G+C   C  C+C +GY    C++C           P C        +CAE L  ++  F            LS+N     +C  + + + C   Y   ++     YL       E V G  +A          AI+ G +AGI+L+G+LLL++WK L+ L D +EY +FE+ +  S W  D NP+++      +NP +A
Sbjct:   28 FKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKE---CQ---PPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWR---NVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNL--------YKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPK--SAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVT-HRNQPRGDCDGVQINVPITFQVKVTATEC----IQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP---GRGLCFCGKCRCHPGFEGSAC-QCERTTEGCLNPRR--VECSGRGRC--RCNVCECHSGYQLPLCQEC-----------PGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKER-DSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPNIA----------AIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFEKEKLKSQWNND-NPLFKSATTTVMNPKFA 767
The following BLAST results are available for this feature:
BLAST of TCONS_00015257-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB27.834e-12732.83Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2[more]
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