TCONS_00015256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015256
Unique NameTCONS_00015256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015256 ID=TCONS_00015256|Name=TCONS_00015256|organism=Clytia hemisphaerica|type=transcript|length=2065bp
cgaaaattttctcattttttctctCTCCTCTTTTATTGCTTGTCATTGTA
TCATTTGAacagaattttttatttggttggtTTTTTTTGAGGAAAGAAGg
attttggagtttttttaacCATTAAAGTGTAAAGATGTGCCATTGTTTAA
TGGACAGGAAAAAATTGGTCAATGCTCTTCTGTTGGTTGCCTTGGTCATA
TTTATTGGACAAAATGTCCATGGACAAGCTGAGGAGGATGAAAGTCGTTG
TATAAAAGCAGCGAATTGTGATGAATGTATGAGGATTGGATCAGAATGTC
ACTGGTGCGAAGATGGGaatTTCACGTTGGGCGGTCGTTTAAACCGTCCG
CGTTGTGGAGAGATCAACGTGCTCACTAAAGATAAATGTCAAAATATTCG
TTATCTAAATGATACCAAACACGAGatTACTGACAATACTCCATACGATT
CAGTCATCCAGGTCCGTCCACAAAAACTCACTGTCGCTCTCAGAGCTGGT
AACGCAAAGAAGTTTAAAGTAAATATTAAACCGGCAGAAGATTTTCCGGT
CGACATTTACTTTTTGAACGATTTGTCTTTCTCCATGAAAGAAGATTTGG
CAAATTTGCGGAAATTGAGTAACAAAATAGCTGAAGAAATTGGCACAATC
ACGAAAAATTATCGATTGGGTTTCGGTGCTTTCATTGATAAACCAACACA
ACCTTTTATCTTCTATCCACAAGATTTCCCAGAATTCCCTTGCACGCGAA
AAGAGACTGAACTAGGATCATGCCAATTCAAACGGCCCATCTTTGGTTAT
TCGCACATCTTCGATTTCAGTGCTAATACTACAGCATTCCAGGAGGCAGT
AGAGACCATTGACGTGTCCGCAGATATTGATGACGCTGAAGGATGTTTCG
ATGGGTTGATGCAAGCTGTTGTCTGTGAAAGTGTACTGAAATGGAAGGCA
AGAGGGCGTGCCCGTCGTTTGATTATTATGGCCACTGATGCTGAACCTAA
ACTAGCCGGTGATGGCAAGTTGGCGAACATTTTGAAACCAAATGACGGAA
AATGTTATTTGAAAGAACGGTTAGTGAGCGGTAAAAGTGAAATGTATTAT
TACAAAACCCTAGATATGGACTACCCATCAATCAGTCAATTGCGACGTGT
GATGAAAGAAGCGGGTGTGGCACCCATTCTTGCTGTGTCAAAACCTTTCA
TTGACCAGTACAAGaaaattgcagAACATTGGAATGAATTAGGATCAGCT
GCAGAAATTTTGACCGAAGATTCCACCAATATTGTAGAAGTGGTCCGTGA
TAACTACCAGAGAATTGCTACCACAGTGGCGTTGACAGATGAAGCACCGC
CATACCTGGAAATTTCATACAAAGTGGACCGAACCACTTGCACAACACCT
GCACGAGTTGTTTCAGACAGTGTTTGTGCTGATGTCAAATTAAAcaaaga
aattgtttttgatgTCGAGATTAAATTGAAAGAATGTCCTAACCCATTGC
CAGAAGACCCAAGTGTGAAGATTCGCATCGCTGGTTTTGGTGAAGTCACT
GTGGACATTGAATACCTTTGTGAATGTAACTGTGAGAAAGAACCACTCAG
TGcaaaatgcaacaaaaaaggGGATTACAAATGTGGAATATGCGATTGTA
CTGAAGGCTTCTTTGGCTCTCTCTGCCAATGTGATGCCTCGAAGGTTTCC
AGGAACGACACATCCAAATGCATTGATCCCAAAAACTCCAAACAAATTTG
TAGCGGCGATGGTCAATGTATCTGTGGCGTATGTGAATGTACTCCGAAAC
AGtCACCAAGAGTCATTTCTGGAGAGTTTTGTCAATGCAAGAATTATGGA
TGTCCAAAATATTTGGGCTCTGAATGTGGATCCGCAGAGACTGAAAAACG
CGGAGAATGTGAATGTGGAAAATGCAGATGTGTTCCACCGTACAAGGGAA
TCAACTGTGGTGAAATCGAATGTGTTACTCAACAGAAACTCACTTGCAGG
AAAGGAGGGATTGAATGCAGTGGTCATGGTAAATGTTTGGATAATTGTAA
AGATTGCAAATNTGT
Run BLAST on NCBI

transcript from alignment at sc0000208:82991..98172+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015256 ID=TCONS_00015256|Name=TCONS_00015256|organism=Clytia hemisphaerica|type=transcript|length=15182bp|location=Sequence derived from alignment at sc0000208:82991..98172+ (Clytia hemisphaerica)
cgaaaattttctcattttttctctCTCCTCTTTTATTGCTTGTCATTGTA TCATTTGAacagaattttttatttggttggtTTTTTTTGAGGAAAGAAGg attttggagtttttttaacCATTAAAGTGTAAAGATGTGCCATTGTTTAA TGGACAGGAAAAAATGTAAgataattgtaatttttaatagttttgttttg tttttattattttatatattttaagtTTTCCCTTTACTAGGGAGTGTCAC ATGTAATAAATACCGGAGCCTTTTTCTTATTGAAAGCTGAAAAGATCTTA TGTGTAGCCgcttattttcaaactttgataGGAATCTCTTTTTGACTTAA CCACACCCTGCTTCACCTTTAACTTTATTACTCAAACGATGTCATAGGAC CAAACTCTTTCACATTCTCTTTGTTCGctttttcattaatttatttatta CGTCCATcggtaaaatcaaaaagttgcGCAAGTGGCTCTAGGTACAGAAC TATCTTAGGCCATAGACGTCATATACGTCAAAAGGGCGTAACCTGAAAAC GTtagttattttattttttctgtaaCGTAGAATCTTCATGTTCTAATTCA TGTGTAAAAATATTGCATAAAATGAGTTACACAGCTTGATCTAAGTTTTA TTTATGAAACCAGTGAAAAAACCCATTCCTCGTAGTTGGCGATTGCTTGT CTATTcaaacccccttctcacaaacccactgggaccccttcccactagaa aaattggccaaaatgtcgtccccagtggaaaattaccctcaatttttgtc cccactgaaaataatccaACAAAACAATCCTCACTGCGAAATATTATTTT GTCCATCCccgctgaattttctgacttgaaaacaaaagaattaaattcCC CAGCCACGAagaatatggaaatatcaatcccagcgagtttcagtccgtta tttttaaccCACTGGCTTAAAagatcccaccgggtctgtgaaaagggggt gtcTATTCCCTATAACCTCTTTAGATGCACCTCGTTAAATGTGCCAAATT ATTTGAGCCATGGCGATTTGGATATTAACAATATCTGATTGGTattattt ttgtgttttagcTACAAAATTCAATCAACCAACTTTTTCTTAAAGTTGTT CTACAAATTTTCCTAGAGTTATTTGGCTgatttttgactttgtttaaGTT ACTTCAAACATTTCATATCAAAcgtaaatcaaaattttaaaagaagggta aaagataattttcgaaaccgattttgtttttttctgaaagattggTTTTT GGTTAGTTACGTAAGCCCCTAATAAAACGCAATTAAATTACATCATTaac gtttttttgttttcaatttaaaGACTTTCTTCTTGCCATTAAGACTAACA AGgaattaaaaatgacaaattttcgACAATTCAAATCGCAAATGAAGAAT TGCATGTCACCCAGGGAAAATTTGCGGTAATAGGGCATGTAatggaaatc aaacaaaaattaatgtgAAGACagaactttctttttcttttacttcTTGA GAATGCAATAAATCAGCAATTTCACGTATTtcatgatttaatttttttgc aagattttaggcttaaatcttaTGACTGTATCAGATTAAAAATAATCTTC AATTCTGCATGATTTGTGCTGCAATCAGCATAAATTTGAGTCATCTTTTA ATTCTTCTTAACACTGTGACATCTTTAACGGAAACATTTAATACCGGATG GGATTTCCGGTTTCGTATGATGAGACTGAAAAACGTTTTTCATTTAAGAA ATAAGAATATTACCATTAATTATAATTTTAACTATTAACTTTCATATCTA TGCAACCAAAAACAATTATTTATATTCGTTATTATATTCTAAGTTTTATA TTACCTAAAAAAAGATTACCGAAGTATTTTCACGCTTAATATATCCAATC CTGCTATTTCTCTAACTTAATCAAATCTTACAGTGTCTAGAAAATGATGG CAAGTCTTTCCGGAACAACCAATCATTTTGTATGAAACTGTCATTCTAGT TCGCCTATTTTCGATTCCGCTATCTTACTCAACTTTGATCTATTTTGCTC AAATATGGATATCATTCTACATCCAGCTATATTGTATCTTCTTCAGATGG CTCTGATTTGGTTTAATGATTTTATCTACATTGaacttcaaaatttagaa atttcagccAACATTTTTTGATTATAAAACTTTGCGTAAAATGAGAGTCG TTTAGTCATAGTATAATACTTCATAGCTCATACCATGCTTATAGCTAACT AATATTCAAACTTCTCTTGTTTCAGTGGTCAATGCTCTTCTGTTGGTTGC CTTGGTCATATTTATTGGACAAAATGTCCATGGTACGtattatgatattt tttgttataaattcgAATTGCCGTCAGCTAACTGGGGTCCATTACTAGCT GAGAAAAGACTTTTTCAATCGAGATGCTTATGTGTGAGATTGCAGATaaa aaaggctgaaaaatgtttattaaCCTTGGGCAGCTATCATTCTTCTTTAC GTTGCTGTGTACaatagtacacgttttttataagaacaaactatataaga acataaggcttcgatggccaaatgttaagaacaagttaagaatattttaa gtctttgcagactctaaaacactcaattttttagaggaaaatggacaaaa atgctcaaaaaatggtgaaaataaaaacatatttagaacatttttaggct taaagcttaaaaagctaagaacatccgatgccttcaaaaattttggatgt tcttataaaaaaacgtgtagaactTTCTTTACAGTATCCCGAATGACTTA CTATTCTATTCTTCtccgaaacgtagccaaacgtaaatctcgtgatccaa gccatgTTAAACTTCCAATATACTATTCTATGATTTCGATGTTGTACTTC TATATGTTTCGCCTCATTTTTTAGGACAAGCTGAGGAGGATGAAAGTCGT TGTATAAAAGCAGCGAATTGTGATGAATGTATGAGGATTGGATCAGAATG TCACTGGTGCGAAGATGGGGTAAGTTGTCTTGAGATTACAGAGCTAAATT TGATGATACCTCTGTCTCATCAAATTATACACTTTTTCGAGATGGATGAA TTTGAAGGTGACATCTGAAATCAAAGCAGAAAAGATCAAGATATCCGTAT ATCGCAGCATCGCATCGTTTCTACATTATTGACATGTTGCTCCTTATACT AGAGTCTTACTTCTGGCAAAACTTTGCTTTCTAATGATTTTGATGGTGCT GAtcccagtgaagtagactagaggaattcgccatcttgaattttttcact ttcgttttcaaaagttatatgaaaacatcaaaacaatatAATGTTGTTTA AAATTCcatcaaagtttatgaaactTTAATTAAATacttccaaaatttga aaagatggTATATTGGTcatggttttctgtttgtttttctttaaaaagag aCTGGATCTAATGGTACCTCaagcaaaaccaaaaaatggAGCCTGCCAAA TTACACCGgaccacttatcagcgccatccagtgTATCAAAAAGTGGCCCC CGGGCTAGTTCCCCCTTGGCTTGTGCACTTACCCCTTAATCTATCAtcac tttcttttgtttcagaatTTCACGTTGGGCGGTCGTTTAAACCGTCCGCG TTGTGGAGAGATCAACGTGCTCACTAAAGATAAATGTCAAAATATTCGTT ATCTAAATGATACCAAACACGAGGtgatatgacgtcatttttttcaaaat ctttataaaaaaatctctaTACCCGATAAGATACCAGAcagaagaaaagt aatatatttttcaacatgCTATAATATAATAAGAAAATCCATAACACAAA AACAACTCTCGGCCCTAATTTATTCATAAAAAGTTTCTCTATGCACGGGC AGCCGAAGTTGTTAAGGTTAGAATTATGCTTCCTTTTTCGTATATAAACG AATTATCAACGGTTTACTAGTCATATGCTCTGTTTTATTATTTAACTTTA GGCGAggtcaatttaatttgttgttttacgggccaagctatcCACAAAAG GGTCGTAGGTGGgcgaaaaattaaaacaaaagtggaatttcacctataaa atctcctaaataggcagcaaaaactactacatcttgacaaaaaatgcgaa atagaaaattataaaagacacaaaaaggtcgaattcacggataaaatgaa aaattgaacataaatttataaaataaagtccaaaattttgaaaatttggc agtctgtaaagaatgaaaataaaaatgtactgccaaaatcaatttcattt tgattttgatttttggaatttcagggtcgttCGGGCCCGTAAAagaacta atcaaattggtctcgtctTATAATGAAGAGTATGAAAATTCTTTACCTAA ACGATCGAATTCTTAACCCTCGTCTAAGTGGATTAAACTTCACGTGGATT GACTCTCGTTTAGACAGtcagctctctctaattcgaacctagaatctctc tataattcgaactaaaatgttCATCCCGTTACCATCTAGAAGAGTAGTAT GAAATATTCTCCGTAATCCGAATCTGTCTCTTATTCtaagtttgaagaaa attttctgttccttgaagatcgaattagagcgtcaactgtatactTTCAA ACGacgttaaggccggtctccactttcgcgcgagatgagcgaaaactttt tgacgtttttgtaaagtcattggtcggttgaaaagtgaagcaaattccat tggtcgaaaatgacgtaacggatgaaaaaagtaacttccttcaacttttt tttgttgcgttaaacttttttatgacgcaatcttttcttcaggcaaaata ggttaagaaaaaaactggcgcccatttcgcgcgaaagtgaagaccggcct ttagaagaccgttgaaacaatgttgtgtacGAGTTGGTtgaatcttttca tttttttctagatTACTGACAATACTCCATACGATTCAGTCATCCAGGTC CGTCCACAAAAACTCACTGTCGCTCTCAGAGCTGGTAAGTTGACTTATCG AGTTCATCTTTTTTATCTCTTGCAACATTTTGTTTCTTTCGACTCTACTA GGCGCAAAAAGTACACATATTGTGATGAGTTGTTTCCGGGTCTCACCTAA ATTTTTAGGTCcccatttttatgtttttaaggggcacttttaataaaaat cttaattttaggCATACATCTTATGCATGTAAAATAGCTTCTCAAAAAAG GGTCGTAGcctaaaatcagaaaaattgttttgcaatTACAAGTTGTTAGA TTCATCATGTTTAGGTATAATTGAAAGATAGCATCCgagatttcaatgat tttgaaGGGAACGGGGAATACAACAATGACTTCGTCAATATGTCTCCAAA AGTTCCATATAAAGTTTTCTAATCCGGTTCACACCACACCACACCACTAT GGTACAAATAAGTTTATCAGGTTTAATAATCGCGCCAAGAATCTCAAagt actttatttttttcacatATTTTAAAGGTAACGCAAAGAAGTTTAAAGTA AATATTAAACCGGCAGAAGATTTTCCGGTCGACATTTACTTTTTGAACGA TTTGTCTTTCTCCATGAAAGAAGATTTGGCAAATTTGCGGAAATTGAGTA ACAAAATAGGTAAGAAATATTGATATTACTcctagactggcacgccagtc gggctggaacggtatcacgcgggaaaagtgagcgtaggagttaggtaagc cgtaggaagaaattttgtcggcggcaagggctgaaagctgttaatcagca gcccctcaccaacttttgctcgttttCCTACGCAGCTTCTATTCTAGCAA ACAAACCGCCGCCTTTAtattcccgccctctgacatgattaattaacaga gactagtttgctagtctatatTCCTCCCCTCTTAGTCAATCAAATTGATT CTTTTTCAACTGGTTGATATTTCCTTATTGGGATTAATTTTCAGGTCGAA TTTCACGAGCTTAAAAAAAATCGTGGAATGCTTTGGGTTTACGCGAGTTA TGGTTTTGATGAATTTGGTCTCTATTTAATTTTTCGAATTAgcctaaaat ctgataaaaaatcGTCTTGAAAGTAGAAGTTTTCGCGGACGATAGAAGTT TGGATGAGGCTTTTTATACTAAAAATTTGCATGTTGGCAATATGATTCTA TCTTGCGAAAGTTAACCCCATTAAAGGGTCTTATGAGGTCAAAACACGTT TACAGTAAACACTTTATAAAACTCCAGCATAAATCTCTGCAGCATAATTT AAAACTCCAGCATAAATCTAAAACTCCAGCAAAAATCTCCGCAGACTTTC GATGATTCAAGCTCTAtgtttaaccccctggacaccctgcatttttggaa aagaaattcAAGTTTGATTTTAAGGATAATCTTTATACTTTTCCgtttgc tttgaaatttgacaaccttcttaacctttgacaaccttcttaacctaagg ttgaactaccactggcgtaaaaatgaacgttgtagcataagtagaaaaaa agctcaatttttgcaatcgcaaatttaaccgcctAAAATCgcatacattc aaatatagcgcttttgattctctaaaacaagcaaaaaatgttttcgaaat TATAtcggactatcaaaagttacaggcattcttgtttccactacCAATCA TATCTGGATACACTTTAATAAAATTCATCCTTGCTTTTTCTAGCTGAAGA AATTGGCACAATCACGAAAAATTATCGATTGGGTTTCGGTGCTTTCATTG ATAAACCAACACAACCTTTTATCTTCTATCCACAGTAAGTaccacacaac gttgtttcaacgtttatttaacgttcacaacgtctatttaacgttagatg aacgttgaaacaacgttgtgtgccagctgggttggtAAAAATTGTAATTT AACATTTTTGCTAGATGAACTTGTAGGTCAAAATATTTGAAcaaccctgt gtcacagacccggtagggccacagacccactggaaaatttggtcaaaatt ttgtcctTGGTGGTAAAAATACCCTGCAATTTTCCCTACTGtggaaaaaa attctaccggggCTTTGAGACAAGGGTTTGATtagatttgaaaatttcga tGCGAATAGTGACTTATGGGCGAAGGTTTATTTAGATCAAATGTCTTTTT ATGAAACCCAGAATTAccagaaaactttcaaaaatacagAAAGAACCCAG CTCCTTAcctatattctttttttttcatctatttTAGAGATTTCCCAGAA TTCCCTTGCACGCGAAAAGAGACTGAACTAGGATCATGCCAATTCAAACG GCCCATCTTTGGTTATTCGCACATCTTCGATTTCAGTGCTAATACTACAG CATTCCAGGTcagttttatttaaaaaatggagttttttatttttttacat cttttagGTAGCTTCACGAGTCtctatttgtttttaaaagatttccaaat GATACGGAAAAAATATAGGTTTGGAATCCGgtcattgggctattccatta aaaaaccatacgaACCTTTTCGACTcgaaagaaaattattgaaaatgtgt aaGTCTTCCCCTGGAAGatagcaaaatttgcaaaaacccttggaaaaatt cttttcatacctcaaagtgagggtggacgaactaaattAGTCTTTCACCC CGTGGtgattttagaataactttttaccccttggaaaaatgagaaaacac cccctggaaatttttcttgcATTACctcctggaaatgttcgtccacccct gtATCAGTTTACACGCAAAACATGCATTGTTgatagcctagttaactaag cccgtattcacaaggttAAGAAGCACGGCTtaggcaatatagcgtttttg tcgctttaaagattttctatattttcGGGTTTGCCTTTGATTACTGTTAT TCGggcacaacttaccatcagattcatcaaactagcttagatttctaggg tacattgttaactgaaattCTTTACCAGCCGAAATGTTCAAAATATATAA CAGaaaacaaattctgaaaatgtgcatctttaaaatttgaaattcaagtc AGAAAAAGAATGACACGATGATCTTAAAATAAGCCGATATTTCCGATAGC CTTTACTACATCATTATCAAGAcaagattttttatatattgttaactgaa atCTTACTTTAATAGGAGGCAGTAGAGACCATTGACGTGTCCGCAGATAT TGATGACGCTGAAGGATGTTTCGATGGGTTGATGCAAGCTGTTGTCTGTG AAAGTGTatgcaaatatttttaaatgtttgTCACATGATTGACGTAGAGT AGTTGGAAGGTTATAGAAATTCCTAGTCGATAGATTGGCGAATCTGGTCT agtaaatttataagaaaagcGACGTAGCATTTTACAAACTGTCTTTTACT GCAAATAATTTGAACGGACCATTTTTTTACGATAAGGCTAAAGACAATTA CTTATTATGCGGACTTTGTTCCTCTAAACAATTCtacattgtaacacgca tgcgtaatttgtcgttcttttaaaccacacaCAGtcaattcccgtgataa acaaagaggaatgaatccgTAGGGGTGGTAAAGACACTTTCGGTCAGGGT TTCGGACGGCGAAATATGACGTTCTTTATGAAATCTGtccttctttttgt ctatttttagtaatgcaggattcttttgATAAACGCCTTCGGAGTATGTT TTCCTAAACATTCCATATTTTGTTAATAGtctgttttgatttcttttcgt TGAAAGCTATTAACTTGTCACTAAATGAGAGAAATCGGCAAATgatagac tttttcataaattacgtcacgaatatcacttgcctcgttttcaaacaatt accatggtgaatATGTCCCTTGAAACATTAAATGattgttttatgaaaag aaaatagTCCGCTGGGATTTattcaccatggcaataatttcaagtgatgt tcgtgacgtaatttataaaaaggttCATTGTACCAACTTAAAAGTTCGTG TAATCAACAGAACATTCTGTATTTTATATAACAGGTACTGAAATGGAAGG CAAGAGGGCGTGCCCGTCGTTTGATTATTATGGCCACTGATGCTGAACCT AAACTAGCCGGTGATGGCAAGGTAAATAATCCACTCTTAAATATCATCCC AACCATTTCGTAAAACAGTacactatataagaacataaggcttcgatagc caaaatgtaagaacaagataagaatattttaaggctttaggGACTcaaaa aacacccaatttcttagaaaaacacacaaaaatacCCACagaatggcgaa aataagaacattttaagaacatttttaggcttaaatctgaaaaagttaag aacattcgaaggcttcaaaaattttggatgttcttataaaaaaaacgtgt attattgATAATTTGCCCCTAAAACAACCTTGTTAATAGTCTATCCATCT GATGTCAAAGGTGAGTAATCATCCACTTTTTAGTATCTTTCCAATCATTC AGTAAAAAGTTGTGTATGCTCCACAGAACAACGTAACATCAATCTACTGA tgacaaaatgacccttttCTGAAAAGCTTTTAATAAGACAGGATCGCTTA TTTGTTTCGCTTTTGAAGTTCccttttttctatatttttctagactggag tcgtttataatatgcgtgtaatacaatagtataggcgttatatgatacga ttattgttacgggatttagtttgtaaactaaaattgttccctccattact ttttgctttatttctactatgtctgaaatAGTCGTTTAGCTTCCTAGACT AATATTTTCCCGAACTTTATTTATTAGTTGGCGAACATTTTGAAACCAAA TGACGGAAAATGTTATTTGAAAGAACGGTTAGTGAGCGGTAAAAGTGAAA TGTATTATTACAAAACCCTAGATATGGTAAGATTTACATTATGTATTTAT TATATTCGCCTCTACAATGAGCTTGGAAATTTTACCGCTTAGACGTTCTA TAACTGCGTTAagtcttatctgatattccgatggcggattggcagtctcc cacgctaaagctcatcggagaggaatgatagtcggcctttgttGTGCCGC accccagtcgggttcaacagctCTTGTCCGTAAACCTttaaatatttcgg ttggacccgccaatcccatCATCAGCGGCCCAAGCCCTGATTTAGCGGCC CAAGACCTGGGAAACTTTGCGATTTTTGAGACTTGCTGTTTTGGAAAAAG AAGATAAACGAACCGTTATATTCCCATGGAAAAGTACTTCAATTTGATGA TTTTCTAATGAATGTGTTCTACTagttttttagaactttttagGCCGATA ATTCAGGTCTGGGGCCACTATAATTTCTAAAATCATGGCAAAAAAGCAAG TCAAAGTCAAAAGTCGCAAAGTTTCCTAGGTCTTGGGCCGGGAATTCAGG TCTTGGGCCGCTAAATTAGGGCTTGGGCCGCTTACGGAAGAAAATTTgca tccccgaaaacgagggctgggttaccagacccgGGAGGTgctgaaaattt tcccgaccttcagagctttagcgtgtcggatgaaaatttcacgaTCAGGG TGCCAGATAACGTTAAGCCGAAAATGGGTTCTGATCGGTAGAAAATCTTT ACCGATCAGAACCCATTTTCGAGTTTAGAtattaaaattatgaaaaaatg aagCTCCTTTCCATAAATCTCTGAGTCTCCTTCGGATTTTGTTTATTATT ATGAGAACCGACTGGACAAATTTAAAGGAAACACTTTAATTTCAGGACTA CCCATCAATCAGTCAATTGCGACGTGTGATGAAAGAAGCGGGTGTGGCAC CCATTCTTGCTGTGTCAAAACCTTTCATTGACCAGTACAAGGTAAAATCA CTCTAGTACTTTGATAAAGTAAATTCACGTGAAAAAATCAatggtttttt caaaaaattatcgaAATTATGCAAATGATTTATCTAAAAATCTGAATTTC TCGAAAAAACGCAGCGTTCCACAGTGAGTTTGACTCAAAAGTTACCGTTA ATCTTTTTATATCTGGATATATATaaggctctgaccatagtgaataaTCA ATTTTCGAATTTTAAGTTAAAACCTCATGTTTTCGCTTGTTTGACATGTG TAGGAACAGActgctttgaaaaaattaattttaacttATTATAcaatgag taattaaggaataagtgtgacATGGACCtcaataaaacgtcataacgacg ttAATAAtatactttttacaaaaaatgctaacattttttttcaaaatatt cacaaataatTGCACAATTCTaaattttgcagaaaatttttctagatgta tatttcaaaagttatgactgtttatATAGCAGAAAATAGGATCAGAAATT GAcgaaaaggcacttttttgaagattttgagaaaaagaagccataataaa aattttccgcaaatcTAGGTATTTTTAGTTCCTTAGAAGAGACACCATCt gagccaaaaaaaattttttatttgccGTTTTTTAGGTTCTCAaaattgaa atactcttcttcccCAAAAagtcttcaatttctttttcacgaaatttttt CCTTgcgatttttagatttttagatgCACAAATGAAtggtctaacagaaa atgtataacattgTACACTTTAACTATCTACATAATGCACAAATTGACAT TGAGTTCAtgccaaaattacgaaaattcactatggtcagagcccttaaag ttctaaataataaatcaaagtttctttcttttaatttaaatttttaattt aaattttatgattatttcttagaaaattgcagAACATTGGAATGAATTAG GATCAGCTGCAGAAATTTTGACCGAAGATTCCACCAATATTGTAGAAGTG GTCCGTGATAACTACCAGGTAATTTTCACACAACTGGGTATTTCAATTTT ATGCTTAATTCTTTGCCATCGAATTATCCATAatgtaaaatatcaaaaat gtatTATTTTCGCCTGCGGTGCCATATTCATCTTTTGCTTTGAGTTGCTT CGGAATTTGTATTCGAATGACTGAACAACAATTGTTTGAGAGGGTTTTGC ATTGGACTTAAACGTAGACAGACAATATTGGAATCATTTGCACTGAAGAT GACTGTGTCGAAAAGCTTATGCttaatttttaaatgaaaaactttcgTGT CTAATTCTTTATCAACTTGAATTTTCAACTAATGCCTGGCAAAACTTTCG TCAACAATATTGGAACGTTTTGAAGACGTATCTAGGCGAATAATTTAAAT GAGGAAGGAGATCAAATGAAGCTTCACTCCTAAATAAACCATTTTTGTGT TTGAATTTCAGAGAATTGCTACCACAGTGGCGTTGACAGATGAAGCACCG CCATACCTGGAAATTTCATACAAAGTGGACCGAACCACTTGCACAACACC TGCACGAGTTGTTTCAGACAGTGTTTGTGCTGATGTCAAATTAAAcaaag aaattgtttttgatgTCGAGATTAAATTGAAAGAATGTCCTAACCCATTG CCAGAAGACCCAAGGTATGCAAAAGTTTTCCGTGTGTATGGTTTTCGTTT TCGGAAAATTTTGTCGGGATATTTTTTCATGCACGAGGTAAAATTTGTtt acttttataagaaaaaaattgtaaaaaatttaaaagaacttTTGCTTCCC CCATTCGATGAAATTTACCCCTTTTATAGTCGCCTGATCAAATGATTCGA AAGTTTTTACCAGTGGACCGTTTATGTAAAATTATCTCAATTCATTGACA TTTTATGGTTAAAGTGAGCTGATCCAGCTTTTTTATGGAGTGGTCAAAAG TTTCGGTAAAGTTTTCGCTTTTTGACACTTATGAAAGTCCATACAAACTA CCTGTATAACtctctattttctttccaacagTGTGAAGATTCGCATCGCT GGTTTTGGTGAAGTCACTGTGGACATTGAATACCTTTGTGAATGTAACTG TGAGAAAGAACCACTCAGTGcaaaatgcaacaaaaaaggGGATTACAAAT GTGGAATATGCGATTGTACTGAAGGCTTCTTTGGCTCTCTCTGCCAATGT GATGCCTCGAAGGTAGGtttcttatcaaataaaaagcCAAGGGTGACCCA AATCTTCTTTTTCTACCATGCAACCAATTAAAAGTATATAGGTTACTACT ACTTTCTGTTACCTCTCTTATTTAGTTTCTAAGAATTGGGTAAATAGGAA ATTTTTCAGGTCCTTAGTACGACCTAGGCTGCTTGCATCCACTAACAGAT TTTTGCACCttatactacctgcggttttgtagaggtctgcgattcagact aagtaAGATGCAGCTAGGAGTATAACCCatctctcaaaattttaaagctt AGCCGGCATCTCTCCCTTCATGCTAGATTCACAGTCTGAAACGCTGAGgg tatgaaatatgtgttaTCAATTTCTTTTCAGGTTTCCAGGAACGACACAT CCAAATGCATTGATCCCAAAAACTCCAAACAAATTTGTAGCGGCGATGGT CAATGTATCTGTGGCGTATGTGAATGTACTCCGAAACAGGTGGGTTTGAG CAATGACTAATAAACAAATATATTATTAATCTTTTTTAAACTGATGACTA AAAGTCTTCCTAGATTACTAGAgaggtaccgtaagttggtctaatgtcaa catcttTCTTCTAGTTTCAACGTTcctctttagagataggaatactAAGA AAGGTCGAGATGACTGATGGACAAAAGATTTTCTCCTccctgaccactaa gcaaaaaagatagtttccatcagcggtgtcgacattagaccaacggGTTT TACTTCGTTAAACGTGCATGTGTTGTACAATATTTTGCTAAGATAAAGAA AATGTATGTAGGCTGTCATGCTTTGGCTTCCAGCTTAAACGTTGGAAGCT CGTATTAAGATAACGAAACATTTATCCAACATGTTAGCTTATGTACATTG AAAGAAAACGCCGAAACCTCAGAATGATAGGGAaaggaaattttgatttc aatccATTCTCAATCTCTCTCCAACAGCTAAttaaaatttgtttgttttt cagtCACCAAGAGTCATTTCTGGAGAGTTTTGTCAATGCAAGAATTATGG ATGTCCAAAATATTTGGGCTCTGAATGTGGATCCGCAGGTGTAGATTGTC CTATTTTCTTATatcactgaaaattttaaataagcTTTTCTTTTGTGTTG TCATTGATTATGATggataaaaaaagagaaataccTTGTGTTGCTGGTCA TGGTCACAGACTACTTCcatgaaaatcacaaaaaatcaagcaaaaatatA TCAAGGATCCATAACTTAGCCTTGGATAAATGTTACTTACTTACCTACTA AAAAATTTAACGTCCGTGGTTCCCAGCATGAGCTGGGGTTGGACGCATTC CTCTGATGATAAATCACACATTCTAATTCTATTTCCGAGAATTTCGCTGG TATATTTATTCATTTCCTTTCCTTTACAGAGACTGAAAAACGCGGAGAAT GTGAATGTGGAAAATGCAGATGTGTTCCACCGTACAAGGGAATCAACTGT GGTGAAATCGAATGTGTTACTCAACAGAAACTCACTTGCAGGAAAGGAGG GGTATGTTTCGTCTTTGAGTATTAGAAGCTCAGTTTTCCCAAAGACGGGA ACACGGAATGAGCATATACTTTCCAAAATATTCGAATGataatacacggg ttgcaaaattatatcaatgcagtcaacaTATGTgataactcgaaaaagtt cacgcgattttattcccatgttacttgctttacaacttacagctgataac aggtcaataaattcgaaccaatcagaaaaaaatgtcatgtaacaagcacg tAAAAATTTCTATTAAGGTTCTAAATATTGCCTTTAGCTAAAAGTCTTTA CAACAAAGTTCTcgagtgaaaaaatttctcgagtgaaataatttttaatg attttaattaTTGTCGCGTTTTCTAGATTGAATGCAGTGGTCATGGTAAA TGTTTGGATAATTGTAAAGATTGCAAATNTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008532XLOC_008532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015256-exon-sc0000208-1491911889:82991..83155TCONS_00015256-exon-sc0000208-1491911889:82991..83155Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:82991..83155TCONS_00015256-exon-sc0000208-1510915933:82991..83155Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:82991..83155TCONS_00015256-exon-sc0000208-1575043694:82991..83155Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:85316..85372TCONS_00015256-exon-sc0000208-1491911889:85316..85372Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:85316..85372TCONS_00015256-exon-sc0000208-1510915933:85316..85372Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:85316..85372TCONS_00015256-exon-sc0000208-1575043694:85316..85372Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:85965..86059TCONS_00015256-exon-sc0000208-1491911889:85965..86059Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:85965..86059TCONS_00015256-exon-sc0000208-1510915933:85965..86059Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:85965..86059TCONS_00015256-exon-sc0000208-1575043694:85965..86059Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:86656..86763TCONS_00015256-exon-sc0000208-1491911889:86656..86763Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:86656..86763TCONS_00015256-exon-sc0000208-1510915933:86656..86763Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:86656..86763TCONS_00015256-exon-sc0000208-1575043694:86656..86763Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:88002..88074TCONS_00015256-exon-sc0000208-1491911889:88002..88074Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:88002..88074TCONS_00015256-exon-sc0000208-1510915933:88002..88074Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:88002..88074TCONS_00015256-exon-sc0000208-1575043694:88002..88074Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:88568..88699TCONS_00015256-exon-sc0000208-1491911889:88568..88699Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:88568..88699TCONS_00015256-exon-sc0000208-1510915933:88568..88699Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:88568..88699TCONS_00015256-exon-sc0000208-1575043694:88568..88699Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:89784..89874TCONS_00015256-exon-sc0000208-1491911889:89784..89874Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:89784..89874TCONS_00015256-exon-sc0000208-1510915933:89784..89874Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:89784..89874TCONS_00015256-exon-sc0000208-1575043694:89784..89874Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:90328..90448TCONS_00015256-exon-sc0000208-1491911889:90328..90448Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:90328..90448TCONS_00015256-exon-sc0000208-1510915933:90328..90448Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:90328..90448TCONS_00015256-exon-sc0000208-1575043694:90328..90448Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:91256..91345TCONS_00015256-exon-sc0000208-1491911889:91256..91345Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:91256..91345TCONS_00015256-exon-sc0000208-1510915933:91256..91345Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:91256..91345TCONS_00015256-exon-sc0000208-1575043694:91256..91345Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:92125..92211TCONS_00015256-exon-sc0000208-1491911889:92125..92211Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:92125..92211TCONS_00015256-exon-sc0000208-1510915933:92125..92211Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:92125..92211TCONS_00015256-exon-sc0000208-1575043694:92125..92211Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:92918..93016TCONS_00015256-exon-sc0000208-1491911889:92918..93016Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:92918..93016TCONS_00015256-exon-sc0000208-1510915933:92918..93016Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:92918..93016TCONS_00015256-exon-sc0000208-1575043694:92918..93016Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:93886..93981TCONS_00015256-exon-sc0000208-1491911889:93886..93981Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:93886..93981TCONS_00015256-exon-sc0000208-1510915933:93886..93981Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:93886..93981TCONS_00015256-exon-sc0000208-1575043694:93886..93981Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:94913..95008TCONS_00015256-exon-sc0000208-1491911889:94913..95008Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:94913..95008TCONS_00015256-exon-sc0000208-1510915933:94913..95008Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:94913..95008TCONS_00015256-exon-sc0000208-1575043694:94913..95008Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:95452..95654TCONS_00015256-exon-sc0000208-1491911889:95452..95654Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:95452..95654TCONS_00015256-exon-sc0000208-1510915933:95452..95654Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:95452..95654TCONS_00015256-exon-sc0000208-1575043694:95452..95654Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:96022..96202TCONS_00015256-exon-sc0000208-1491911889:96022..96202Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:96022..96202TCONS_00015256-exon-sc0000208-1510915933:96022..96202Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:96022..96202TCONS_00015256-exon-sc0000208-1575043694:96022..96202Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:96572..96679TCONS_00015256-exon-sc0000208-1491911889:96572..96679Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:96572..96679TCONS_00015256-exon-sc0000208-1510915933:96572..96679Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:96572..96679TCONS_00015256-exon-sc0000208-1575043694:96572..96679Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:97194..97278TCONS_00015256-exon-sc0000208-1491911889:97194..97278Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:97194..97278TCONS_00015256-exon-sc0000208-1510915933:97194..97278Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:97194..97278TCONS_00015256-exon-sc0000208-1575043694:97194..97278Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:97620..97741TCONS_00015256-exon-sc0000208-1491911889:97620..97741Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:97620..97741TCONS_00015256-exon-sc0000208-1510915933:97620..97741Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:97620..97741TCONS_00015256-exon-sc0000208-1575043694:97620..97741Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1491911889:98117..98172TCONS_00015256-exon-sc0000208-1491911889:98117..98172Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1510915933:98117..98172TCONS_00015256-exon-sc0000208-1510915933:98117..98172Clytia hemisphaericaexon
TCONS_00015256-exon-sc0000208-1575043694:98117..98172TCONS_00015256-exon-sc0000208-1575043694:98117..98172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:82991..98172 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.408244 0.812173 0.717008 0.0174998 1.17301 0.562115 0 0 0 0 2.09809e-05 0 3.45755 4.77272e-05 0.546809 6.17257e-09 0 0 1.07119 0 0.152228 0.300468 0.719693 0 0 4.04383e-09 0 0 0.0481265 0.161141
Blast
BLAST of TCONS_00015256 vs. Swiss-Prot (Human)
Match: ITB2 (Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 4.783e-104
Identity = 209/606 (34.49%), Postives = 311/606 (51.32%), Query Frame = 3
Query:  252 IKAANCDECMRIGSECHWCEDGNFTLGGRLNRPRCGEINVLTKDKCQNIRYLNDTKHEITDNTPYDSVIQVRPQKLTVALRAGNAKKFKVNIKPAEDFPVDIYFLNDLSFSMKEDLANLRKLSNKIAEEIGTITKNYRLGFGAFIDKPTQPFIFYPQDFPEFPCTRKETELGSCQFKRPIFGYSHIFDFSANTTAFQEAVETIDVSADIDDAEGCFDGLMQAVVCESVLKWKARGRARRLIIMATDAEPKLAGDGKLANILKPNDGKCYLKERLVSGKSEMYYYKTLDMDYPSISQLRRVMKEAGVAPILAVSKPFIDQYKKIAEHWNELGSAAEILTEDSTNIVEVVRDNYQRIATTVALTDEA-PPYLEISYKVDRTTCTTPARVVSDSVCADVKLNKEIVFDVEIKLKECPNPLPEDPSVKIRIAGFGE-VTVDIEYLCECNCEKEPLS-AKCNKKGDYKCGICDCTEGFFGSLCQCDASKVSRNDTSKCIDPKNSKQICSGDGQCICGVCECTPKQSP-RVISGEFCQCKNYGCPKYLGSECGSAETEKRGECECGKCRCVPPYKGINCGEIECVTQQKLTCRKGGIECSGHGKCLDNCKDC 2057
             K ++C EC+  G  C WC+  NFT  G  +  RC     L    C     ++ T    T         Q+ PQK+T+ LR G A  F V  + A+ +P+D+Y+L DLS+SM +DL N++KL   +   +  IT++ R+GFG+F+DK   PF+    D    PC  KE E   CQ   P F + H+   + N+  FQ  V    +S ++D  EG  D +MQ   C   + W+      RL++ ATD     AGDGKL  IL PNDG+C+L++ L        Y ++ + DYPS+ QL   + E  + PI AV+   +  Y+K+ E   +  SA   L+EDS+N+V+++++ Y ++++ V L   A P  L+++Y    +   T  R      C  V++N  I F V++   EC     ++ S  IR  GF + VTV +   CEC C  +    + C+ KG  +CGIC C  G+ G  C+C     S  +        N+  ICSG G C+CG C C     P ++I G++C+C    C +Y G  CG      RG C CGKCRC P ++G  C + E  T+  L  R+  +ECSG G+C  N  +C
Sbjct:   28 FKVSSCRECIESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKE---CQ---PPFAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWR---NVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNL--------YKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEIIPK--SAVGELSEDSSNVVQLIKNAYNKLSSRVFLDHNALPDTLKVTYDSFCSNGVT-HRNQPRGDCDGVQINVPITFQVKVTATEC----IQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP---GRGLCFCGKCRCHPGFEGSAC-QCERTTEGCLNPRR--VECSGRGRCRCNVCEC 603          
The following BLAST results are available for this feature:
BLAST of TCONS_00015256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB24.783e-10434.49Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1 SV=2[more]
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