TCONS_00015229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015229
Unique NameTCONS_00015229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015229 ID=TCONS_00015229|Name=TCONS_00015229|organism=Clytia hemisphaerica|type=transcript|length=1558bp
ACATTTTGGCATATTATTTCATAAAACCTAAAATTCTCTCACAAGAACCC
CTATTTGGACTTTAAATGATATTGCCTATGTTTGTATCGTGGGTTTTTGT
AAAATGCAGAACGGTCTTATTCTTGTAAACATAAACATTAAACAGCAATC
GCGAGGGAGTATCATTTCGAAAGCAATAGAAGAGATTTTCTGCAGTTTAA
GAGATGGCAACTTTTGCAAGAAGGGCATTACAACACGCTAAAAATGTATC
AACAGTAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAATTGGCCGCCG
CAATAACACCTGTGAATGTTACGCCATTCCAGCAAACGAGACTTTTATCA
TACTCAAGaGCAATCATGAGCAAAGCATTTGTCCAAAAACAAGCACCTGA
CTTTGAAGCTGAATCTGTTTTAGCTGATGGCAGTTTTGGCAAGGTCAAAC
TTTCTGACTACAAAGGAAAATATGTTGTCCTGTTCTTCTACCCTCTGGAT
TTCACATTTGTGTGCCCAACAGAAATCATTGCTTTTAGTGACCGTGCTGC
CGAATTCCGTGCAATCAACTGTGAAGTCCTCGCATGCTCAGTCGACTCAC
ACTTCTCACATCTTGCATGGACTGAGAGACCAAGAAACAAAGGAGGCCTA
GGTAAAATGAATATCCCACTTGTATCTGActtaacaaaacaaatttccAA
AGACTACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTCAGAGGATTAT
TTATTATTGACGACAAAGGAACACTGCGACAAATCACCGTCAACGATTTA
CCGGTTGGACGATCTGTCGACGAAACTTTGCGATTAGTACAAGCTTTCAA
ATTCACTGACGAACACGGAGAAGTTTGCCCTGCTGGATGGAAACCAGGAT
CTGACACCatcaAGCCATCAGTTGACGAGTCGAAAGAATATTTTGGAAAA
CAATAGATTGTCTTCAATCGAAAAATGAGAAAGACCAATATCATTAGGGA
CCGTTACCCCTTTGATCGAAGAACGACTTGATGGATTTTAAATATTAGTA
CTAATATATTAGACATgttgttatttttaatttttctttctacccaaCGT
ATTGTCGGGAAAGTTTAGGAGGCTGTAAGATCATGTCTTTTTTTAAACCA
TTAAAAGAACGTGGTAAGAGCATTTGCGGTTTGTTCGTGAACACAAACTT
GATCCAAACTGCCTAAAGGGGGGACATAACCactattttatgttttgtta
atgtttttatactttttgttacatattttttttttgctctgtACTTACTT
AGGACAAATTCTATTTTCTTTAATATTATTATTGGTAGTAGAGTAAAGAA
CTGTATTTCGAGGAAAACCGCTGTATTAAATTTTTACCCAAAATTGTCCC
ACTAAAGTCTGCCTCAATAAAATTTGCAGCggtagaccagcggccgaggt
aatgaattgtgtcacttggtagggcaccccttagatcagggcaaaatttt
gatattatgcagctaatagggtgtagaattgacaaaaaaattgccCTTCA
AATCTCCT
Run BLAST on NCBI

protein sequence of TCONS_00015229-protein

>TCONS_00015229-protein ID=TCONS_00015229-protein|Name=TCONS_00015229-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MATFARRALQHAKNVSTVTGSKNLLTRAKLAAAITPVNVTPFQQTRLLSY
SRAIMSKAFVQKQAPDFEAESVLADGSFGKVKLSDYKGKYVVLFFYPLDF
TFVCPTEIIAFSDRAAEFRAINCEVLACSVDSHFSHLAWTERPRNKGGLG
KMNIPLVSDLTKQISKDYGILLEDAGISLRGLFIIDDKGTLRQITVNDLP
VGRSVDETLRLVQAFKFTDEHGEVCPAGWKPGSDTIKPSVDESKEYFGKQ
Run BLAST on NCBI

transcript from alignment at sc0000205:236759..245291-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015229 ID=TCONS_00015229|Name=TCONS_00015229|organism=Clytia hemisphaerica|type=transcript|length=8533bp|location=Sequence derived from alignment at sc0000205:236759..245291- (Clytia hemisphaerica)
ACATTTTGGCATATTATTTCATAAAACCTAAAATTCTCTCACAAGAACCC
CTATTTGGACTTTAAATGATATTGCCTATGTTTGTATCGTGGGTTTTTGT
AAAATGCAGAACGGTCTTATTCTTGTAAACATAAACATTAAACAGCAATC
GCGAGGGAGTATCATTTCGAAAGCAATAGAAGAGATTTTCTGCAGTTTAA
GAGATGGCAACTTTTGCAAGAAGGGCATTACAACACGCTAAAAATGTATC
AACAGTAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAATTGGCCGCCG
CAATAACACCTGTGAATGTTACGCCATTCCAGCAAACGAGACTTTTATCA
TACTCAAGGTAAACCTTTAGATGTTTGCTTTTCATTTTTTCTAATTCAAA
CTATCCGAAATTTAATTAAACTGCATACCCCACTGCGTGAACAGATTAAG
CACCAAATGGATAAAAAAGAGCGATATAAATTTTCCATCACCCTATTAAT
TTTTGCCGATTTTGCCTATGACAGCGTTAGCTAAGGGTTACGAGTTTTAC
ATCATAATAACGTAAAAAGGCATCACGGCAAGATCAGGTTTAACGTACAA
TTTTTACTGGTATATTAGTAAAGAAATTAAATACTTTTAATGTCATTTCA
TATTAAGAATAATCAAAGATTCCTTTTCAATTCCTTCCTGCCCTGATCTC
AACTTGCAAAATGAAAGTAAACAAAGCGCGTAATTTGGTAATTTGATCTC
TTCGTTCACGTGAAATCCACCATATTGAATTTCGAATCGTTCGGTAAAAT
ATACGCTGTGTCGTCCAAACCTTTTTCTTTTTTCTGCGATTTCTTGCTGA
CATCACTTTTCACGTTTTCCTCAAACAAAGAGGAAGCAACAGGCCAACTC
GAAACTGACCATCCAAGTTTCAAAGGAAGGAATCTTCTAGCAGAAGTAAT
TAAATTACGTCACTTTTCTTAATTCTCTATAAGTATTAATCATGTTCATC
CATTTACAGTCTCATTTTGATGTTTGTGAAAGGTGTTTTGGTTTTTCAGT
AGTAGTTTGGGGTAAGATTCTACTTCCAAGCCAAAGACTTTTCCAGATAA
CTTGCATGATGTTAGGGGGTCCTAATAAAATATAAGGTCTGGGGGTTGGA
AAATTTTTGAAAAATTAACAAGCAGGGGGGGGGAGTGTTTATTTGGAATG
TATGTTTGATTGCGTTTGAATTAGTTTAGGTTGAGATTCGATTATGTTCG
ATTAGTTTGATTACAATGTTCAATTAGATTGATTGTAATTAAATTACCTC
TATGGTATTAAATTTTGCATAATGTAAAATTTTGCAGGTACTCGCAATTC
TTTAGGTCAAATTTTGCAAAATTTAGTATGCTAAATTTTCAAAAAGGCGG
CAATCACAAATATCTTGTCTTCTCGTTGAGTCTAAAAAGTGAGTCGGTCG
GTCGGTCGGTTGTAAGAATTTTCGGGTTTTCATCCATCCTCCAGTGTATT
ATTGTGATGCTCTTAGATCGAATGGCCAAAAGTCACCTTATTTATTTTCT
TATCCGCGCATCGCTAAAAGTCACCCTGGAAGACAGGGGTTTGGTTATCA
TCAGTTAGGGTCAGTGTTGGAGCTCGAGAGTCACAATAAAGGACCGAAGG
TCCTTATAGGGGCACTCGTACCCTGTGGCTTTACTTTGGATCCCGAAGGG
ATCCTTGTAGGGGCATCAGTAGGGCTGGGAGTTTCATCCAGAGATTTGTC
CGTTTGATATAACTTTATTCAAATTGTGGAATTTGATATGCAACGATGGC
ACAGTGGATAGAGTGCTGTCTTCCGGAACTGAGGGTTCCAACCCCATACG
GTGCGATGATTTGATTGGACAAAATATGATTGACAGATCAAAACCTAGAA
AACTTAGATAGTTAGAAAATAAAAAACAAAGTCTCAGATAGTCAGAAAAG
AGAAAAATAGGATAAGAGATAGGAAATAAAAAAAGGTGACGATTGGTCAT
CCGATATAACATCTACCGTATTATTGAAGGAAACTGCCTGCTAGCCAGCA
GCCAAAACAACGGCGTTTTATGGGTGGTTTCAAATTATGAACTTGGAACA
CTGTGACCGCCGACTCAAAATGGTGCATATAATGATAAACAAATTCAAAA
AACCGGCAATATAAAATTTTTGAACGAAGGAAACGTCATTGACAGGAAAG
GTCCGACAAATTTACCGACTTACCGACTCAATTCTACTCAATTTTCAAGA
GTCAGTCAGGCGTCGCAAAACGAAGATATTTGTGATTGTCATCAAATACA
AAATTGCAAAATTAAATACACGTGAAAAATTTTAAAAATTGTCAAAAAAT
CGCAAAATTTTCAAAAATGAAATACAACATCAGCCCTGTGAATCAAGGCC
GGCATTCGGCAATGCCGACCTGCAAGCCGACGTAACTTGAGCTGAAGTCG
GCTTTTATTTGCCGACGTAATTTACACTCTAGGTTGGCGTACCGACAAAA
GAAATGTTTTGGGTCGGCAAAGCCGACCTAAAGGGGGAAAATATTATTTG
TTCGGTTAATCTAAAATTGTGTTATCATTTGATAACACATGATAATTGAG
CCTCGTTTCATTCTCTTTATAAAACATAAAACTTATTAACACAATTATAG
AGCAGTTCGTCTTTGCCGACCTAAACAAGCTACTTAGGACGGCTTTGCCG
ACCTAAATGACCTCTAGGTTGGCAAAACTTGCGTGCCGATTGTCTGAATT
CACAGGGCTGCAACATGGACCAAGACTTTCTTCTTATTTGTTACACTTAA
TTACCATCAGTCTAAACTCAAACTTCTATATCAGGATTAGAAACTAGGCT
AGCCTTACCTCTTTTATCTTTTCCTTTACAATAATACAATGCTGACAAGT
TGACACAACATATGTGTACATGTACATTGACAAGTAATCCCTGAGAGAAG
TTTATTTCAAAATCTGCAACAAAAACGGAAATGGTCTCTTCTACTACTGA
TTGCTTCCCTGTGCTCCTTTGCAGGTGTTTATCAAAACAGTATAAAGAAT
CACTGAATAAAAGAAGAACTTAAAATGTTAAATATTTTCATCTTGAAGAA
TAGGTGCAAAAAAGTGAAACATAGAAAAGTTTCATTTTTCATTGCATTAA
TCGAATAGGGGGATTTGGAAAATTTTCTTAATTTTAATTTTTGCACAAAC
CCCTGTAATTATGTGCGAGCACTCCGTTGCTAAGATGTTGGCTTGAAATC
GAAAATGAAACCACTCAAAACGAAAATAAAATCAGCCCGTGTACTCCAAA
TCCCGTAATCTTGATATACGAGTTCAAGTCTATACTGACCATTATTGTCA
CTAGCTTTGTTAGGGGTCACTCACCTATCGATTCTTCCCACGACTAACGC
CAAATACACCGTTTAAAAGAGTTTCACTATCTCCACCGTGAAAACGGTAG
GTAAAAATGCGCACTTTAGTACTGTGGACCGTCTAAACAAAAGGAACACG
AGACATAAACATCAGGCCATTTGTTTTGGATAAAATTGTTCGGTGAAATA
GTAAAGCGGATGAATACCTAGGTATGTGATCTTAGCAGATCTTAGTTGAT
AAAAGGAGGAGAAGAAATATGGAAAGTAACATTTGGCACAGAATAAACGT
CTCAAAAATTGATATTTCTGGTGAAATTTCTTCACGTCACAGACTGTAAC
ATTCTCGTCAATTTGACGTTAGTCGTAGGAAGAATCAATATGTGAGTGGC
CCCTTGCTATTTTTGGTATGTTTACACCCAATATGTTGTGTTTCAAGCGA
AGTCAGTAATTTTCTTTATTATACTCACTTTTTGAAAATGCCCTAGAAAA
TTCCAAGCACTTTTTTGTGGCTGTTATACGGCCAAGAGACTTAATTTTGA
ATTGAGTTTTAAAACTCAATATTTGGAAAAAATTTATTTTGTGTCAAAAT
ATTTCAAAAAGATGATGATAGTGAGCAAAATCAGAATGTAATCTCTCTAT
CAGTCTCTATGATGATTGAAAATAAATCCAATTCAATACATTTCTTTTTA
TTTTTACAAATACAATGCTTAATCCTTGAAAATAAGGGAGCGATTTATGC
GAGCAAATGCAACTGAATCAATCAAACGTAATTAAATACAATCAAACTTA
AAATCAAGCATTTGAACAGCAAATCTTGGGTAATATTTGATTGTGTTCAA
TTGATTTGGCATTCCATTTGTTTGATTGACACCGTCTGGCTATGCCAAAT
AATATTTAAAAAATTTGAATCTAATCAAACAACTAAAGCAGACCTGCCAA
CTTGAGATATTCATTTTGCATGAGATAAACATTTTGAGGGAAATCCAGGG
AAATCTTAGAAAGCTACAGGGTAGCCCCGTTGGTGATCAGAAAGAGAATT
TTTTGTAGTGTTTTTCTCAAGATCAGTCAAGATAGGCTGATTTCAATAGG
GACGGCATCAGATAAATGGATGCCTAAAAAAATATAAAAATACACCGGTG
CGTGATGATCCTTAAGACTTGTTTATGATTTGAGGCACAATAATATTTTT
CTGCTGTGCTTGGATTTTCAATGTAAAATTAGATACCCTTGAAAGAACAA
ATTCTTGCGTTTTGGACATGTACTATTAGGGAAGTTAATTCGGCAAAATA
CAACTTGTTTTCTAATTTCTTTTTTTTANAGACTTGTTTATAATTTGAGG
CACAATAATATTTTTCTGCTGAAAGAACCATTTTGGACATGTACTATTTA
GGGAAGTTAATTCGGCAAAATACAACTTGTTTTCTACTTTTTTTTACTTT
TTTTTTGTTTGCAGAGCAATCATGAGCAAAGCATTTGTCCAAAAACAAGC
ACCTGACTTTGAAGCTGAATCTGTTTTAGCTGATGGCAGTTTTGGCAAGG
TCAAACTTTCTGACTACAAAGGTAAACTGATTTAAAGATCTTTTTATTAA
GTGTTGGTAGCTGTCAGCACTTTGGCACCTTTCACAATCAGCTCAATAAG
CAATAAGCCCATGTCTACCTAGGGTAAATTATCAAGCAAAAGTAAATGAC
TATTCAGAAATTCGTTTTTTTTAAATGTTACATCCAGGCTATGTTATGAA
ATATATCTGTAAGTATAATGTATTTCATGTTGTTTTTTTAAATGTTACGT
CCAGGCTATGTTATGAAATATATCTGTAAGTATAATGTATTTCATGTTGT
TTTTCATTTATCATTCATAGGAAAATATGTTGTCCTGTTCTTCTACCCTC
TGGATTTCACATTTGTGTGCCCAACAGAAATCATTGCTTTTAGTGACCGT
GCTGCCGAATTCCGTGCAATCAACTGTGAAGTCCTCGCATGCTCAGTCGA
CTCACACTTCTCACATCTTGCATGGTAATTGGCTGTTTCATTAAATTTCC
AAACAGGGGGTGGATGAACCCCAATTTGCAGAGTGTTTGGCATCTTGAGT
GCACAACTTGAGAAAAGTCGAGTGCAGGTGCAAATTTTGAGGCTGTCATA
CTCAGCGAACTGGGATGAACCTTTTTAAGGCAGAAAAAGATTCTTAGACC
TGCTTAGACACATGTGGATACCCTTTGGAAAATGGCAAAGTTTGCAAAAG
AACCCTTGGGAAATTTTTTTTCAAACCTTAAAAGTGAGGTTGGACAAATA
AAAATCAATCTTTTAAACACCTGGGAATTTAAAATAGTTTTTTATTCCCT
GGAAAAATGAAAAAATACTCCTTTATACGTCCTGGAAATTCTTCTCCCAT
TATCCCATGGAAAATATTCTTCCAATAGTATGGCCTAATGTTATGTTATG
GATCTTATTTTCTGTGCATTGCTGCATGTTAAAGAATAACTTAGTGGCTA
ATTTTTTAAATTGATATTTCGCTAATCAAAGGTCAAGATTTAAGTAGATA
GCATTTCAGGAATTAGCCTCTTTTTCACTTTAACAAAAATCCTGATCCTA
AATCTTTGGCAAGGACTGAATTATGGAAAATGACCAAAAGTTACAAAACT
TAATCCACTGAAGGTATTTACAATTACTATGAAATATATTTCCCATGGAT
TCCAAAATGTTTAGCTGAACTTCTTATGAATAGCAAATAAAAACATGATT
AAAATTTGGCTTCCATAGCAACCTTATGGTCTTGATAACACATGTATTTT
TTATTAAACCATTAGTCTGCATTGATCAACCTTGAACAATATTTGATTTT
ATTTTCTTTTCTCCTGTCAGGACTGAGAGACCAAGAAACAAAGGAGGCCT
AGGTAAAATGAATATCCCACTTGTATCTGACTTAACAAAACAAATTTCCA
AAGACTACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTCAGGTAAGAT
TGGTTTCGATACGTTTTTGGATTACTTAAAAGCTAAAAGTTGTAATTTTC
AACTAATTTTCATCCATTTCAAGATTCAAAAAGCATGCTTGCCATAAAAG
TGCGATGTACTTTCTAACCCTTATTTTGATGATTTCAGATCAAACCCATG
TTTTAAGATTTTTAAGGCGTTTCCTAGGAATCCATAAGTCTGGAAATGGT
TTTTTAGCCCCAAATGGGCTAGAGATTAATCTTTAATCTTTCTTAAGTAA
GAAAAAGTGAAGTTNTTAGCCCCAAATGGGCTAGAGATGAATCGTTAATC
TTTCTTAAGTAAGAAAAAGTCTTAAGATCTGCGCCGCATTAAGAATGACG
GGTTCATGTAAAAACCAGGCGAGTCATGCGTTTTTGGAGTTTGAAGTCTA
GCCCCTTCATGGCTTTGAATAAAATGATTTTAATTGAATTTTTTCAATTG
GTTGGTAGTACGAAAATGAGATTTTTTTCATGGATGAACCTTCTCTAATC
TATGTCTAAGGATTGATCAATCTTTCCTATATTTGGCGATTTAAACCATG
TTTGTTTTCTTTAGAGGATTATTTATTATTGACGACAAAGGAACACTGCG
ACAAATCACCGTCAACGATTTACCGGTTGGACGATCTGTCGACGAAACTT
TGCGATTAGTACAAGCTTTCAAATTCACTGACGAACACGGAGAAGTTTGC
CCTGCTGGATGGAAACCAGGATCTGACACCGTAAGTTCTTTTTTTGTTTT
GCTGTCTAGCTCTTGAGTTTCCAGGTCTCCAGTTCAGAAGATAGCATTTG
CTGTTCATGTGCTGCAACTTAATTCATCAAAACTGCTTTAAAAATGTCAG
CGAGGTTCTCAGGAGTGTAAACTGACCTTGACCTTGTCTAACCCATAAGC
TGGAAAGCTGATAGGTTTTTTGGTGTTCAGGGGCTTAAGTGTTTCTGCAA
AGTGTTTTGCCATCCGATGAGTTTAGATTTACAGGCTGCTACGCTGAGGC
TTAATTAATCTCATCTCCCCGTTGAAGGAATTAAATTATAAAGTTTAGAA
AATTTTTGTGGTAATATTTAAACGTTTTTGATTAAAAACATTTAAGTTTT
ATCTTACTTTTTGAGTTGAGTTGAGTTATATACATAACCTTACCCGTCTT
AATCCCGATATGAAGAAGTGTAGAGACTTTGTTTCACATGCATTATCAAG
AAAAAATCTTTTATGTTTGACGTCATCATCTCAACAATATATATTGGTGA
ATCTTACTAGATTTTCCTGAACTTTTTGAATTACCGATTTCTTTTACTTT
ACACCTTGGAAACGAAAGATGATTTTTTTTCTCATATCTATATCTTTGTA
AAATATTAAGTTTCCAATTTTAAATGTTTTTCGAAAACGATATTTTGAAG
TTTGTCACAAATCACGTCGCGAATTCTCTTTTTCTCTCGCTTGTTTTATT
GAACTGAAGATACTAGACAAAACACTTTCAAAAGATGAAAAGATAAAGAA
TTTTAGAGTCCACGTTTAATTTTCTTTTTTCAGATCAAGCCATCAGTTGA
CGAGTCGAAAGAATATTTTGGAAAACAATAGATTGTCTTCAATCGAAAAA
TGAGAAAGACCAATATCATTAGGGACCGTTACCCCTTTGATCGAAGAACG
ACTTGATGGATTTTAAATATTAGTACTAATATATTAGACATGTTGTTATT
TTTAATTTTTCTTTCTACCCAACGTATTGTCGGGAAAGTTTAGGAGGCTG
TAAGATCATGTCTTTTTTTAAACCATTAAAAGAACGTGGTAAGAGCATTT
GCGGTTTGTTCGTGAACACAAACTTGATCCAAACTGCCTAAAGGGGGGAC
ATAACCACTATTTTATGTTTTGTTAATGTTTTTATACTTTTTGTTACATA
TTTTTTTTTTGCTCTGTACTTACTTAGGACAAATTCTATTTTCTTTAATA
TTATTATTGGTAGTAGAGTAAAGAACTGTATTTCGAGGAAAACCGCTGTA
TTAAATTTTTACCCAAAATTGTCCCACTAAAGTCTGCCTCAATAAAATTT
GCAGCGGTAGACCAGCGGCCGAGGTAATGAATTGTGTCACTTGGTAGGGC
ACCCCTTAGATCAGGGCAAAATTTTGATATTATGCAGCTAATAGGGTGTA
GAATTGACAAAAAAATTGCCCTTCAAATCTCCT

Coding sequence (CDS) from alignment at sc0000205:236759..245291-

>TCONS_00015229 ID=TCONS_00015229|Name=TCONS_00015229|organism=Clytia hemisphaerica|type=CDS|length=4518bp|location=Sequence derived from alignment at sc0000205:236759..245291- (Clytia hemisphaerica)
ATCAAGCCATCAGTTGACGAGTCGAAAGAATATTTTGGAAAACAATAGAG
GATTATTTATTATTGACGACAAAGGAACACTGCGACAAATCACCGTCAAC
GATTTACCGGTTGGACGATCTGTCGACGAAACTTTGCGATTAGTACAAGC
TTTCAAATTCACTGACGAACACGGAGAAGTTTGCCCTGCTGGATGGAAAC
CAGGATCTGACACCGACTGAGAGACCAAGAAACAAAGGAGGCCTAGGTAA
AATGAATATCCCACTTGTATCTGACTTAACAAAACAAATTTCCAAAGACT
ACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTCAGGAAAATATGTTGT
CCTGTTCTTCTACCCTCTGGATTTCACATTTGTGTGCCCAACAGAAATCA
TTGCTTTTAGTGACCGTGCTGCCGAATTCCGTGCAATCAACTGTGAAGTC
CTCGCATGCTCAGTCGACTCACACTTCTCACATCTTGCATGAGCAATCAT
GAGCAAAGCATTTGTCCAAAAACAAGCACCTGACTTTGAAGCTGAATCTG
TTTTAGCTGATGGCAGTTTTGGCAAGGTCAAACTTTCTGACTACAAAGAT
GGCAACTTTTGCAAGAAGGGCATTACAACACGCTAAAAATGTATCAACAG
TAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAATTGGCCGCCGCAATA
ACACCTGTGAATGTTACGCCATTCCAGCAAACGAGACTTTTATCATACTC
AAGATCAAGCCATCAGTTGACGAGTCGAAAGAATATTTTGGAAAACAATA
GAGGATTATTTATTATTGACGACAAAGGAACACTGCGACAAATCACCGTC
AACGATTTACCGGTTGGACGATCTGTCGACGAAACTTTGCGATTAGTACA
AGCTTTCAAATTCACTGACGAACACGGAGAAGTTTGCCCTGCTGGATGGA
AACCAGGATCTGACACCGACTGAGAGACCAAGAAACAAAGGAGGCCTAGG
TAAAATGAATATCCCACTTGTATCTGACTTAACAAAACAAATTTCCAAAG
ACTACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTCAGGAAAATATGT
TGTCCTGTTCTTCTACCCTCTGGATTTCACATTTGTGTGCCCAACAGAAA
TCATTGCTTTTAGTGACCGTGCTGCCGAATTCCGTGCAATCAACTGTGAA
GTCCTCGCATGCTCAGTCGACTCACACTTCTCACATCTTGCATGAGCAAT
CATGAGCAAAGCATTTGTCCAAAAACAAGCACCTGACTTTGAAGCTGAAT
CTGTTTTAGCTGATGGCAGTTTTGGCAAGGTCAAACTTTCTGACTACAAA
GATGGCAACTTTTGCAAGAAGGGCATTACAACACGCTAAAAATGTATCAA
CAGTAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAATTGGCCGCCGCA
ATAACACCTGTGAATGTTACGCCATTCCAGCAAACGAGACTTTTATCATA
CTCAAGATCAAGCCATCAGTTGACGAGTCGAAAGAATATTTTGGAAAACA
ATAGAGGATTATTTATTATTGACGACAAAGGAACACTGCGACAAATCACC
GTCAACGATTTACCGGTTGGACGATCTGTCGACGAAACTTTGCGATTAGT
ACAAGCTTTCAAATTCACTGACGAACACGGAGAAGTTTGCCCTGCTGGAT
GGAAACCAGGATCTGACACCGACTGAGAGACCAAGAAACAAAGGAGGCCT
AGGTAAAATGAATATCCCACTTGTATCTGACTTAACAAAACAAATTTCCA
AAGACTACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTCAGGAAAATA
TGTTGTCCTGTTCTTCTACCCTCTGGATTTCACATTTGTGTGCCCAACAG
AAATCATTGCTTTTAGTGACCGTGCTGCCGAATTCCGTGCAATCAACTGT
GAAGTCCTCGCATGCTCAGTCGACTCACACTTCTCACATCTTGCATGAGC
AATCATGAGCAAAGCATTTGTCCAAAAACAAGCACCTGACTTTGAAGCTG
AATCTGTTTTAGCTGATGGCAGTTTTGGCAAGGTCAAACTTTCTGACTAC
AAAGATGGCAACTTTTGCAAGAAGGGCATTACAACACGCTAAAAATGTAT
CAACAGTAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAATTGGCCGCC
GCAATAACACCTGTGAATGTTACGCCATTCCAGCAAACGAGACTTTTATC
ATACTCAAGATCAAGCCATCAGTTGACGAGTCGAAAGAATATTTTGGAAA
ACAATAGAGGATTATTTATTATTGACGACAAAGGAACACTGCGACAAATC
ACCGTCAACGATTTACCGGTTGGACGATCTGTCGACGAAACTTTGCGATT
AGTACAAGCTTTCAAATTCACTGACGAACACGGAGAAGTTTGCCCTGCTG
GATGGAAACCAGGATCTGACACCGACTGAGAGACCAAGAAACAAAGGAGG
CCTAGGTAAAATGAATATCCCACTTGTATCTGACTTAACAAAACAAATTT
CCAAAGACTACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTCAGGAAA
ATATGTTGTCCTGTTCTTCTACCCTCTGGATTTCACATTTGTGTGCCCAA
CAGAAATCATTGCTTTTAGTGACCGTGCTGCCGAATTCCGTGCAATCAAC
TGTGAAGTCCTCGCATGCTCAGTCGACTCACACTTCTCACATCTTGCATG
AGCAATCATGAGCAAAGCATTTGTCCAAAAACAAGCACCTGACTTTGAAG
CTGAATCTGTTTTAGCTGATGGCAGTTTTGGCAAGGTCAAACTTTCTGAC
TACAAAGATGGCAACTTTTGCAAGAAGGGCATTACAACACGCTAAAAATG
TATCAACAGTAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAATTGGCC
GCCGCAATAACACCTGTGAATGTTACGCCATTCCAGCAAACGAGACTTTT
ATCATACTCAAGATCAAGCCATCAGTTGACGAGTCGAAAGAATATTTTGG
AAAACAATAGAGGATTATTTATTATTGACGACAAAGGAACACTGCGACAA
ATCACCGTCAACGATTTACCGGTTGGACGATCTGTCGACGAAACTTTGCG
ATTAGTACAAGCTTTCAAATTCACTGACGAACACGGAGAAGTTTGCCCTG
CTGGATGGAAACCAGGATCTGACACCGACTGAGAGACCAAGAAACAAAGG
AGGCCTAGGTAAAATGAATATCCCACTTGTATCTGACTTAACAAAACAAA
TTTCCAAAGACTACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTCAGG
AAAATATGTTGTCCTGTTCTTCTACCCTCTGGATTTCACATTTGTGTGCC
CAACAGAAATCATTGCTTTTAGTGACCGTGCTGCCGAATTCCGTGCAATC
AACTGTGAAGTCCTCGCATGCTCAGTCGACTCACACTTCTCACATCTTGC
ATGAGCAATCATGAGCAAAGCATTTGTCCAAAAACAAGCACCTGACTTTG
AAGCTGAATCTGTTTTAGCTGATGGCAGTTTTGGCAAGGTCAAACTTTCT
GACTACAAAGATGGCAACTTTTGCAAGAAGGGCATTACAACACGCTAAAA
ATGTATCAACAGTAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAATTG
GCCGCCGCAATAACACCTGTGAATGTTACGCCATTCCAGCAAACGAGACT
TTTATCATACTCAAGATCAAGCCATCAGTTGACGAGTCGAAAGAATATTT
TGGAAAACAATAGAGGATTATTTATTATTGACGACAAAGGAACACTGCGA
CAAATCACCGTCAACGATTTACCGGTTGGACGATCTGTCGACGAAACTTT
GCGATTAGTACAAGCTTTCAAATTCACTGACGAACACGGAGAAGTTTGCC
CTGCTGGATGGAAACCAGGATCTGACACCGACTGAGAGACCAAGAAACAA
AGGAGGCCTAGGTAAAATGAATATCCCACTTGTATCTGACTTAACAAAAC
AAATTTCCAAAGACTACGGAATCCTTCTTGAAGATGCAGGCATCTCTCTC
AGGAAAATATGTTGTCCTGTTCTTCTACCCTCTGGATTTCACATTTGTGT
GCCCAACAGAAATCATTGCTTTTAGTGACCGTGCTGCCGAATTCCGTGCA
ATCAACTGTGAAGTCCTCGCATGCTCAGTCGACTCACACTTCTCACATCT
TGCATGAGCAATCATGAGCAAAGCATTTGTCCAAAAACAAGCACCTGACT
TTGAAGCTGAATCTGTTTTAGCTGATGGCAGTTTTGGCAAGGTCAAACTT
TCTGACTACAAAGATGGCAACTTTTGCAAGAAGGGCATTACAACACGCTA
AAAATGTATCAACAGTAACAGGCTCGAAAAACCTTCTCACGCGGGCGAAA
TTGGCCGCCGCAATAACACCTGTGAATGTTACGCCATTCCAGCAAACGAG
ACTTTTATCATACTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008514XLOC_008514Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015229-proteinTCONS_00015229-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015229-exon-sc0000205-1575043694:244934..245291TCONS_00015229-exon-sc0000205-1575043694:244934..245291Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1575043694:240371..240477TCONS_00015229-exon-sc0000205-1575043694:240371..240477Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1575043694:239918..240071TCONS_00015229-exon-sc0000205-1575043694:239918..240071Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1575043694:238949..239071TCONS_00015229-exon-sc0000205-1575043694:238949..239071Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1575043694:238212..238377TCONS_00015229-exon-sc0000205-1575043694:238212..238377Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1575043694:236759..237408TCONS_00015229-exon-sc0000205-1575043694:236759..237408Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1510915933:244934..245291TCONS_00015229-exon-sc0000205-1510915933:244934..245291Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1510915933:240371..240477TCONS_00015229-exon-sc0000205-1510915933:240371..240477Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1510915933:239918..240071TCONS_00015229-exon-sc0000205-1510915933:239918..240071Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1510915933:238949..239071TCONS_00015229-exon-sc0000205-1510915933:238949..239071Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1510915933:238212..238377TCONS_00015229-exon-sc0000205-1510915933:238212..238377Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1510915933:236759..237408TCONS_00015229-exon-sc0000205-1510915933:236759..237408Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1491911889:244934..245291TCONS_00015229-exon-sc0000205-1491911889:244934..245291Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1491911889:240371..240477TCONS_00015229-exon-sc0000205-1491911889:240371..240477Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1491911889:239918..240071TCONS_00015229-exon-sc0000205-1491911889:239918..240071Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1491911889:238949..239071TCONS_00015229-exon-sc0000205-1491911889:238949..239071Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1491911889:238212..238377TCONS_00015229-exon-sc0000205-1491911889:238212..238377Clytia hemisphaericaexon
TCONS_00015229-exon-sc0000205-1491911889:236759..237408TCONS_00015229-exon-sc0000205-1491911889:236759..237408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:236759..245291 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.399	110.095	130.742	124.293	25.9341	20.885	88.3017	105.297	138.155	139.808	130.242	136.286	84.4281	80.8286	138.365	119.509	180.119	171.579	73.8656	91.5705	60.8944	61.4735	70.5858	78.4314	106.78	100.307	135.11	136.559	140.97	101.115
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019479Peroxiredoxin_C
IPR000866AhpC/TSA
IPR024706Peroxiredoxin_AhpC-typ
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0051920peroxiredoxin activity
GO:0016209antioxidant activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0045454cell redox homeostasis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016209 antioxidant activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0051920 peroxiredoxin activity
Blast
[Close]
BLAST of TCONS_00015229 vs. Swiss-Prot (Human)
Match: PRDX1 (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 1.768e-101
Identity = 141/187 (75.40%), Postives = 159/187 (85.03%), Query Frame = 3 
Query:  393 APDFEAESVLADGSFGKVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAAEFRAINCEVLACSVDSHFSHLAWTERPRNKGGLGKMNIPLVSDLTKQISKDYGILLEDAGISLRGLFIIDDKGTLRQITVNDLPVGRSVDETLRLVQAFKFTDEHGEVCPAGWKPGSDTIKPSVDESKEYFGKQ 953
            AP+F+A +V+ DG F  + LSDYKGKYVV FFYPLDFTFVCPTEIIAFSDRA EF+ +NC+V+  SVDSHF HLAW   P+ +GGLG MNIPLVSD  + I++DYG+L  D GIS RGLFIIDDKG LRQITVNDLPVGRSVDETLRLVQAF+FTD+HGEVCPAGWKPGSDTIKP V +SKEYF KQ
Sbjct:   12 APNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSKQ 198
The following BLAST results are available for this feature:
BLAST of TCONS_00015229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRDX11.768e-10175.40Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]
back to top