TCONS_00015190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015190
Unique NameTCONS_00015190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015190 ID=TCONS_00015190|Name=TCONS_00015190|organism=Clytia hemisphaerica|type=transcript|length=1543bp
TCTTAACTATGTAATGTGCAAGTtgaattctttaaaaagaacTTTCTTTA
ACTGAAATAATAAATTGGggataaaaaataattcacattaAAACCTTCAA
CTGATATAACATTATATAACATATACTATATACAACGCcggtaaaaaaat
aaattgcGCCCACACTAAAAAATCCAATATTTCTAAATACTTTACACTCC
TTTGCTACCACTATCCACTTTAGCGGATTCAAAAAATTGTTACTTTACTT
TTACGATTCTTGCTATTTCGAATTTTATGGCAACCTTAAACtcttaaaag
aaattttgtcCTTAACATCTCGCCACCTAAGAGTTATGGAAAGAGTTGAA
TTtattacaagatacttcactcattggtcatttgaagttaTAGAGCTGCC
GcccgcgttctttagaaaaagtaatagaATTGATTTATTAGAGGTTAACC
ACTTAACCAAATcaaaaagagcttgtaaaaacacGAACTTGTCCCAAAGT
TATAGATTTACGCTTAATTAGGCCTTTTCATTATCTACAATGTTAGCACA
ATTTCTATACAAATTAGTCCATATCAACGATAAGTTCACTATCCGACTCT
TCGTCTGCATTAATAGAATTGTCCGAAGCGACGCCATCTTTAGAAGTGGT
CGTTGCCGTTGATTCTGACAGTCTATCATCCTCTTCCTTGATTGGGTGAT
TTTTATTAAACTCCTCTTTGATTGGCTGATTTCTGTTATACTCCTCAGTG
ATTGGCTGATTTCTGTTATACTCCTCTTTTATTGGTAAATTTCTGTTAAA
TTCGTCTTTGATTGGCTGACTTTGTTGGGGTAATCGTTGCTGCTGAAGAT
AGGTGGTGGGTGGTGAATTTTGACGCCCGTTTCTTGGCGGTGATTTTGAT
TCGTAGTTTTCGAGTTTGGGTAATGGAGAATCTGGCGGGAAGAAAACATT
GGTTGAACGAGACATAATAACGGGTGTTCGGTTTACGCCCGGTGTGCAGG
GCGTTAAAGGTGTCATTGGTGTGCAAGGCGATAATGGAGTCATGGGCGTG
GGTGGACAATCACTTTGACTTCCAAGGCGGCCACCCTGATAAGAGGAGAT
AACTCCAGGCGAATTCAATCCATCAATCGAACCACGACGTAACATTTGCA
GCGGAGGCGGTGGTCCTGAATAATAGCCATTAGTTCCATTTGCCGGTCGC
ATATGTTGGTCCCCGGTGCTCATACGCCGAAACGGCTTAATTGTATTAGG
GTCCAGTACGCGGGCCAACATTTTTTCACCGAACCGGAAATGTAGTCTCT
TGTGAGGTACTTTCtccaagattttcattttatagtAATAACGCATAGCA
CGCGCCATCTTCTCATACGTCATACATTTTCGATTTTTAGATTGTCCCCA
AAGGTCCGCAATAACGGCTGTTTTGATTAATCGGAATTCGCCTCTTTCCC
GATTTGTCCATTCGATACACCGATTCggtttgtctttttcttcttcGAGT
ACAGTGCGTAAGAATTGCCATAAATGTAAACAGTTGTTGtctg
Run BLAST on NCBI

transcript from alignment at sc0000205:139400..141040+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015190 ID=TCONS_00015190|Name=TCONS_00015190|organism=Clytia hemisphaerica|type=transcript|length=1641bp|location=Sequence derived from alignment at sc0000205:139400..141040+ (Clytia hemisphaerica)
TCTTAACTATGTAATGTGCAAGTtgaattctttaaaaagaacTTTCTTTA
ACTGAAATAATAAATTGGggataaaaaataattcacattaAAACCTTCAA
CTGATATAACATTATATAACATATACTATATACAACGCcggtaaaaaaat
aaattgcGCCCACACTAAAAAATCCAATATTTCTAAATACTTTATACTCC
TTTGCTACCACTATCNACATATACTATATACAACGCcggtaaaaaaataa
attgcGCCCACACTAAAAAATCCAATATTTCTAAATACTTTACACTCCTT
TGCTACCACTATCCACTTTAGCGGATTCAAAAAATTGTTACTTTACTTTT
ACGATTCTTGCTATTTCGAATTTTATGGCAACCTTAAACtcttaaaagaa
attttgtcCTTAACATCTCGCCACCTAAGAGTTATGGAAAGAGTTGAATT
tattacaagatacttcactcattggtcatttgaagttaTAGAGCTGCCGc
ccgcgttctttagaaaaagtaatagaATTGATTTATTAGAGGTTAACCAC
TTAACCAAATcaaaaagagcttgtaaaaacacGAACTTGTCCCAAAGTTA
TAGATTTACGCTTAATTAGGCCTTTTCATTATCTACAATGTTAGCACAAT
TTCTATACAAATTAGTCCATATCAACGATAAGTTCACTATCCGACTCTTC
GTCTGCATTAATAGAATTGTCCGAAGCGACGCCATCTTTAGAAGTGGTCG
TTGCCGTTGATTCTGACAGTCTATCATCCTCTTCCTTGATTGGGTGATTT
TTATTAAACTCCTCTTTGATTGGCTGATTTCTGTTATACTCCTCAGTGAT
TGGCTGATTTCTGTTATACTCCTCTTTTATTGGTAAATTTCTGTTAAATT
CGTCTTTGATTGGCTGACTTTGTTGGGGTAATCGTTGCTGCTGAAGATAG
GTGGTGGGTGGTGAATTTTGACGCCCGTTTCTTGGCGGTGATTTTGATTC
GTAGTTTTCGAGTTTGGGTAATGGAGAATCTGGCGGGAAGAAAACATTGG
TTGAACGAGACATAATAACGGGTGTTCGGTTTACGCCCGGTGTGCAGGGC
GTTAAAGGTGTCATTGGTGTGCAAGGCGATAATGGAGTCATGGGCGTGGG
TGGACAATCACTTTGACTTCCAAGGCGGCCACCCTGATAAGAGGAGATAA
CTCCAGGCGAATTCAATCCATCAATCGAACCACGACGTAACATTTGCAGC
GGAGGCGGTGGTCCTGAATAATAGCCATTAGTTCCATTTGCCGGTCGCAT
ATGTTGGTCCCCGGTGCTCATACGCCGAAACGGCTTAATTGTATTAGGGT
CCAGTACGCGGGCCAACATTTTTTCACCGAACCGGAAATGTAGTCTCTTG
TGAGGTACTTTCtccaagattttcattttatagtAATAACGCATAGCACG
CGCCATCTTCTCATACGTCATACATTTTCGATTTTTAGATTGTCCCCAAA
GGTCCGCAATAACGGCTGTTTTGATTAATCGGAATTCGCCTCTTTCCCGA
TTTGTCCATTCGATACACCGATTCggtttgtctttttcttcttcGAGTAC
AGTGCGTAAGAATTGCCATAAATGTAAACAGTTGTTGtctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008503XLOC_008503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015190-exon-sc0000205-1491911889:139400..139519TCONS_00015190-exon-sc0000205-1491911889:139400..139519Clytia hemisphaericaexon
TCONS_00015190-exon-sc0000205-1510915933:139400..139519TCONS_00015190-exon-sc0000205-1510915933:139400..139519Clytia hemisphaericaexon
TCONS_00015190-exon-sc0000205-1575043694:139400..139519TCONS_00015190-exon-sc0000205-1575043694:139400..139519Clytia hemisphaericaexon
TCONS_00015190-exon-sc0000205-1491911889:139618..141040TCONS_00015190-exon-sc0000205-1491911889:139618..141040Clytia hemisphaericaexon
TCONS_00015190-exon-sc0000205-1510915933:139618..141040TCONS_00015190-exon-sc0000205-1510915933:139618..141040Clytia hemisphaericaexon
TCONS_00015190-exon-sc0000205-1575043694:139618..141040TCONS_00015190-exon-sc0000205-1575043694:139618..141040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:139400..141040 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20175	0.372214	0	0.630029	0	0	0	0	0	0	0.331165	0	0	0	0	0	0	0	0	0	0	1.22736	0.889731	5.26459e-06	0	0	5.23426	5.18743	0.0127416	0.00418588
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00015190 vs. Swiss-Prot (Human)
Match: EHF (ETS homologous factor OS=Homo sapiens GN=EHF PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.291e-20
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = -3 
Query: 1275 HLWQFLRTVLEEEKDKPNRCIEWTNRERGEFRLIKTAVIADLWGQSKNRKCMTYEKMARAMRYYYKMKILEKVPHKRLHFRFGE 1526
            HLW+F+R +L      P   I+W +R  G FR +K+  +A LWG+ KN   MTYEK++RAMRYYYK +ILE+V  +RL ++FG+
Sbjct:  208 HLWEFIRDILLNPDKNPG-LIKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGK 290
The following BLAST results are available for this feature:
BLAST of TCONS_00015190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EHF2.291e-2048.81ETS homologous factor OS=Homo sapiens GN=EHF PE=2 ... [more]
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