TCONS_00015165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015165
Unique NameTCONS_00015165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015165 ID=TCONS_00015165|Name=TCONS_00015165|organism=Clytia hemisphaerica|type=transcript|length=778bp
TGCAGCCTAGAGGTTTCACATGTTTGCTTCAAGGCCTGGGGGTTCTACCC
TTGCCAACTTGTGTTTATTTTGTACAGGATTAAGGGATTTGATGAAAATG
TCtggaaaacggtattttgaaATCAGACGGTGATGGCGATTAACCTTATT
TTTGCAACCGCTGCAAACCAGTATGACAgtgttattttttcaatttttgg
tatGCTGGGATTCAGCCAAAAATTTGACTGGAAAACAGTATTCCTGACCC
ATACAGCCGCTCTGATTTAAGCGCATTATAATATATATGTAAAGTTTAAA
TGGAGCCAAAAGATTTTAATACTTATCAGGCTTAGGCTAAATAAACTATC
CAAtaagactcgctgcgtcgaacagtgtagcgcgcgtgcGGTCCAGAACA
TCTAAGGGCATCAGAGACCTGTTATTGTGCAATACATACTAATAAAAAGG
TAAAGGGGGGTTCAcgtttggcggaggagcggaatcggccctttttttcg
gacggagtggcggaatttggcgaaaattaagacggaattacggaaattgg
gttctctgacggagacggaaaattagacaattttagtgcggaaaaacgga
atttagcaaaaaaaattgcggaatttcggaattggtaaaagatattccaa
atttgTGGAATTTTCGACGAAAAAATTGAAgctcaaaggaattttcggtg
acggaattttggttcacggaaattggagaaaaaattggagGAATTGTGGA
atcaggtaccccctgaaaccccggTAAA
Run BLAST on NCBI

transcript from alignment at sc0000204:413509..414286

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015165 ID=TCONS_00015165|Name=TCONS_00015165|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at sc0000204:413509..414286 (Clytia hemisphaerica)
TTTAccggggtttcagggggtacctgatTCCACAATTCctccaatttttt
ctccaatttccgtgaaccaaaattccgtcaccgaaaattcctttgagcTT
CAATTTTTTCGTCGAAAATTCCAcaaatttggaatatcttttaccaattc
cgaaattccgcaattttttttgctaaattccgtttttccgcactaaaatt
gtctaattttccgtctccgtcagagaacccaatttccgtaattccgtctt
aattttcgccaaattccgccactccgtccgaaaaaaagggccgattccgc
tcctccgccaaacgTGAACCCCCCTTTACCTTTTTATTAGTATGTATTGC
ACAATAACAGGTCTCTGATGCCCTTAGATGTTCTGGACCgcacgcgcgct
acactgttcgacgcagcgagtcttaTTGGATAGTTTATTTAGCCTAAGCC
TGATAAGTATTAAAATCTTTTGGCTCCATTTAAACTTTACATATATATTA
TAATGCGCTTAAATCAGAGCGGCTGTATGGGTCAGGAATACTGTTTTCCA
GTCAAATTTTTGGCTGAATCCCAGCataccaaaaattgaaaaaataacac
TGTCATACTGGTTTGCAGCGGTTGCAAAAATAAGGTTAATCGCCATCACC
GTCTGATttcaaaataccgttttccaGACATTTTCATCAAATCCCTTAAT
CCTGTACAAAATAAACACAAGTTGGCAAGGGTAGAACCCCCAGGCCTTGA
AGCAAACATGTGAAACCTCTAGGCTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008493XLOC_008493Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015165-exon-sc0000204-1491911889:413509..414286TCONS_00015165-exon-sc0000204-1491911889:413509..414286Clytia hemisphaericaexon
TCONS_00015165-exon-sc0000204-1510915933:413509..414286TCONS_00015165-exon-sc0000204-1510915933:413509..414286Clytia hemisphaericaexon
TCONS_00015165-exon-sc0000204-1575043694:413509..414286TCONS_00015165-exon-sc0000204-1575043694:413509..414286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:413509..414286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
211.408	284.845	402.291	535.995	87.0027	1207.41	434.416	69.6139	125.912	192.889	711.579	213.953	168.757	310.243	247.057	139.09	587.385	198.957	672.871	116.298	114.675	176.921	191.45	129.256	134.373	129.479	356.005	464.302	191.651	234.41
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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