TCONS_00015154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015154
Unique NameTCONS_00015154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015154 ID=TCONS_00015154|Name=TCONS_00015154|organism=Clytia hemisphaerica|type=transcript|length=404bp
ATAATGATTTCGTTTGCTAACTCAGCTTTTTTAGATTACAAGCTCTTTCG
TATTGAATAGATACAAATGTGAAGCAATTTTTGATAGAAAACAGAGagaa
atccaaaatatttgtttatctcagcaaaaaagaacaataagCCGATATCT
GGTCTGATACGAAATATGTGCTCAAAATGAAACGGGAATACTTATGTTAG
TACATAACCTATAGTACATAACCTTTAAATATAACGGTTTTTTTGTGTAT
ATGTTTTTTTCAatgtaaaataaagtttggtttttccttAGCCTGTAAAT
TTCAAACACTCCATTGTCTCTAATAACCCCAGATCAAATACAGTTTGTTT
TTCCTATGTAAAataaagtttagtttttcctaTGCAAAATAGAGTTTGTT
TTTN
Run BLAST on NCBI

transcript from alignment at sc0000204:148082..148485

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015154 ID=TCONS_00015154|Name=TCONS_00015154|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0000204:148082..148485 (Clytia hemisphaerica)
NAAAAACAAACTCTATTTTGCAtaggaaaaactaaactttatTTTACATA
GGAAAAACAAACTGTATTTGATCTGGGGTTATTAGAGACAATGGAGTGTT
TGAAATTTACAGGCTaaggaaaaaccaaactttattttacatTGAAAAAA
ACATATACACAAAAAAACCGTTATATTTAAAGGTTATGTACTATAGGTTA
TGTACTAACATAAGTATTCCCGTTTCATTTTGAGCACATATTTCGTATCA
GACCAGATATCGGcttattgttcttttttgctgagataaacaaatatttt
ggatttctCTCTGTTTTCTATCAAAAATTGCTTCACATTTGTATCTATTC
AATACGAAAGAGCTTGTAATCTAAAAAAGCTGAGTTAGCAAACGAAATCA
TTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008482XLOC_008482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015154-exon-sc0000204-1491911889:148082..148485TCONS_00015154-exon-sc0000204-1491911889:148082..148485Clytia hemisphaericaexon
TCONS_00015154-exon-sc0000204-1510915933:148082..148485TCONS_00015154-exon-sc0000204-1510915933:148082..148485Clytia hemisphaericaexon
TCONS_00015154-exon-sc0000204-1575043694:148082..148485TCONS_00015154-exon-sc0000204-1575043694:148082..148485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:148082..148485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.20873	0.240158	0	1.13443	0	0.935636	1.3139	0.857727	0.197736	0.80327	0.704442	0.459043	0.355576	0.145545	0.410008	0	0.308118	1.03014	0.209285	2.78853	5.08486	0.888334	1.15091	0.781351	1.04979	4.05774	1.87302	3.74292	3.78307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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