TCONS_00015101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015101
Unique NameTCONS_00015101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015101 ID=TCONS_00015101|Name=TCONS_00015101|organism=Clytia hemisphaerica|type=transcript|length=315bp
CGATTTGGTCTTTTGCATTTTGACATCACAAatgatttcttcttcttcat
tatcAGCACTCGTTTCAAAGGGACTGTCCTCGAGGAACGAGCCGTCATTC
AATGCTCTGTCCACCTGGTCGTTAATGATTTCTTCTTCAGACATGGAAGG
GAGAGGTTGTAAGTCATGTCGTGAACGATAATCGTCGATAATCTTTTCGT
GGTGCTCCGTACGGCGCAACGTTCTTGGGAAGCTGTACTGCTTCTGGTTC
GGTGTCATTCCTGAAGggtagaaataatttgagccAATGACATCTTTACT
TTTACTTAAATTGTC
Run BLAST on NCBI

transcript from alignment at sc0000204:156020..156719+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015101 ID=TCONS_00015101|Name=TCONS_00015101|organism=Clytia hemisphaerica|type=transcript|length=700bp|location=Sequence derived from alignment at sc0000204:156020..156719+ (Clytia hemisphaerica)
CGATTTGGTCTTTTGCATTTTGACATCACAAatgatttcttcttcttcat
tatcAGCACTCGTTTCAAAGGGACTGTCCTCGAGGAACGAGCCGTCATTC
AATGCTCTGTCCGCCTGCaaaaatggaaacaaatttAATTATAGATAAAT
ATAAGCGAGAAAACCTAGACTAATTGTCATGAAAACCCAAACAGTACACA
AGCTTGTCTTCTATATTGCATGAGCCTAAATGCATTGTCGAGTACCAATA
AGTACCAATATGCATTCGATTTAACATATTTAGGGTTAAGTTTAGGCAAA
AGACGTTGAGAAGCAGCACCCTGCACTTCCTTGAGAGAAAGATaacattt
aaaataaaataatctaaAAAATACACATAGGCCTTTGTAAAAAACGGAGG
AATGGTATGAATTAAAACGACCAAGAGGTTTTTATTGTAAGGGTTTGGGT
TACAGGAAGCATAATGTCCGAAATTAGCAGAACACACAGGAACACAGACC
TGGTCGTTAATGATTTCTTCTTCAGACATGGAAGGGAGAGGTTGTAAGTC
ATGTCGTGAACGATAATCGTCGATAATCTTTTCGTGGTGCTCCGTACGGC
GCAACGTTCTTGGGAAGCTGTACTGCTTCTGGTTCGGTGTCATTCCTGAA
GggtagaaataatttgagccAATGACATCTTTACTTTTACTTAAATTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008463XLOC_008463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015101-exon-sc0000204-1491911889:156020..156131TCONS_00015101-exon-sc0000204-1491911889:156020..156131Clytia hemisphaericaexon
TCONS_00015101-exon-sc0000204-1510915933:156020..156131TCONS_00015101-exon-sc0000204-1510915933:156020..156131Clytia hemisphaericaexon
TCONS_00015101-exon-sc0000204-1575043694:156020..156131TCONS_00015101-exon-sc0000204-1575043694:156020..156131Clytia hemisphaericaexon
TCONS_00015101-exon-sc0000204-1491911889:156517..156719TCONS_00015101-exon-sc0000204-1491911889:156517..156719Clytia hemisphaericaexon
TCONS_00015101-exon-sc0000204-1510915933:156517..156719TCONS_00015101-exon-sc0000204-1510915933:156517..156719Clytia hemisphaericaexon
TCONS_00015101-exon-sc0000204-1575043694:156517..156719TCONS_00015101-exon-sc0000204-1575043694:156517..156719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:156020..156719 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.1654	34.6647	38.375	46.5289	87.3803	70.5917	34.9898	39.6897	13.1963	20.2459	10.5967	13.3833	5.78737	7.09833	11.946	13.7469	25.5604	18.8953	4.43348	4.6546	5.74116	5.20835	19.9836	12.4012	33.6015	35.4364	6.74712	0	11.147	11.4315
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025901Kinesin-assoc_MT-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008017microtubule binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008017 microtubule binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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