TCONS_00015075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015075
Unique NameTCONS_00015075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015075 ID=TCONS_00015075|Name=TCONS_00015075|organism=Clytia hemisphaerica|type=transcript|length=410bp
AAATTTCACCACTGAACAGAAAAAGCCCTCCCCCTCCCTGACACGAATAG
GGATAAACGATATATTtaacatgaaaaataaatttgtacatggaaatgtg
tcaatttttaCTGACACTTTACTGTCTGAAAtatcatcatgctcaaggtg
taaaaatttttaggtttcaaaaattaacttattttgaagctaaataaaag
ttaggaatttgtAGAAAATTTCCTGTCCAAAGctttattatttcaggagc
tttTAACATCAGTTTAACCACCGAACAGGAAAAGCCCACCCCTTAGCTTA
GCACGAATATggttaataataataaatctTGTCGTAAGTCTAATTATCCA
GACCCAGTGTCTCAAGAAAAGAAGTTGCCATGAATTTGTCGCAGCAAATG
TTATTATGGA
Run BLAST on NCBI

transcript from alignment at sc0000203:35448..35857

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015075 ID=TCONS_00015075|Name=TCONS_00015075|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at sc0000203:35448..35857 (Clytia hemisphaerica)
TCCATAATAACATTTGCTGCGACAAATTCATGGCAACTTCTTTTCTTGAG
ACACTGGGTCTGGATAATTAGACTTACGACAagatttattattattaacc
ATATTCGTGCTAAGCTAAGGGGTGGGCTTTTCCTGTTCGGTGGTTAAACT
GATGTTAaaagctcctgaaataataaagCTTTGGACAGGAAATTTTCTac
aaattcctaacttttatttagcttcaaaataagttaatttttgaaaccta
aaaatttttacaccttgagcatgatgataTTTCAGACAGTAAAGTGTCAG
taaaaattgacacatttccatgtacaaatttatttttcatgttaAATATA
TCGTTTATCCCTATTCGTGTCAGGGAGGGGGAGGGCTTTTTCTGTTCAGT
GGTGAAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008437XLOC_008437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015075-exon-sc0000203-1491911889:35448..35857TCONS_00015075-exon-sc0000203-1491911889:35448..35857Clytia hemisphaericaexon
TCONS_00015075-exon-sc0000203-1510915933:35448..35857TCONS_00015075-exon-sc0000203-1510915933:35448..35857Clytia hemisphaericaexon
TCONS_00015075-exon-sc0000203-1575043694:35448..35857TCONS_00015075-exon-sc0000203-1575043694:35448..35857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:35448..35857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.199849	0.195521	0	0	0	0	0.297477	0	0	0.117552	3.40427	3.16964	0.902034	0.595283	0	0	5.44127	4.90853	0.853281	0.749161	0.607136	0.367983	0	1.18391	0.242025	0.516591	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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