TCONS_00015056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015056
Unique NameTCONS_00015056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015056 ID=TCONS_00015056|Name=TCONS_00015056|organism=Clytia hemisphaerica|type=transcript|length=1907bp
GAATTTTATGACCATATGACAGCTTTCTCATATAGACCACATATAAGTTG
TTTTAACATCATATCTAACAAGATTTTCTTTCGCTATCTGTATGTATTTC
TTCTATGGGGCCATGCTGCCAGTCTGTCAAAACTCACTGCAGTAGAGCAG
ATTTCTGTCTCGCCTTCTCAATGCATaaaatcaaagattgTTTGGATTTT
AACTTGAAAAAGATGCGTAAGAAAAGCGTCAGTTGCGTCAATTTACGCCG
GAGATTCGACAGCAAGAACAATTCGTGTCATAATAACACCAATCAAAAAT
ACGACAAAGTAAATAGCGAAATATTtatatgtacaaagaaaattgatgat
GGAATTTTACCGTTGTTAGAGAGTGCTGGCTCCTTATCTAGCTTTAATAG
TTTCACACCTGCAACGGAAGAAAGCTTTTTATTGGAGAGCTCGGATGAGG
CGCCAAATACGAATAAATCATCGGATTATGAGAACTGTAACAAACGTCGA
ACCAGGGGTAAAATAAGATGTCTAAAACACCGTCCGCACTCATTATCTTT
ATCCGAACGGAATTTGACAACCCGATTACAAGAGAACGTTAAACCCGATT
CGGAATCAAGCAAAGACAATAATTCATCTTTATGCAAATCGAAAACAAAT
CTTACAAAGTGTTCGCATAATACTGAAGATGCGCATTGTTGTGGGCAgca
aaaacacaagaaatctTTGAAATCGAACGAATTGATAGACTCGCCTACCC
AAGagaataataacaataatgatACCATTAACGAAGAAGCACAGATTTCT
TTCAGTAAAGAACAACGCAGACGTTTAAAACAGAAAATGAGACAGCGACA
GAAGTTTCAGGATAAATCGGTTTTCCTTGGTCTTTTTTAAACGCGTGCCT
ATTCTACATCTATTGCAGatcgttttattttttatatatacgCAGTTCTT
TGgtttcatacattttctttttgataacaTACGATGGTGAATTTTAATCC
GCCACAGAACACGACGTACGTTTTACCCCGTTTATATATCatgatatttt
cttttgatgCTATATAATAGTTGTTATATAAAATCTTTGACTCGAAGCTT
AGAACCAAATATCATTTTACCAAAGTCTCTTCTGTCGATTGGTTAAATCT
CGAAATTTCCTTTCTTTTCGATTATATTCATACGTTTTCGTGTCCTCAAA
TTCTAATTCTACTGATTGAGAAGACTCATTATCGTACAacagcataaaat
ttctaacCCCCTTGAATTATGTTGTTTATTCGCAATTGTTAACTCAAGAT
TATGTCATCTTTCCTGtatgaaatacacgtttttttttataagagcatcc
aaaaattttgtttaaacTCTTCGgatctttttcagttttaagccaaaaaa
tattcttaacatgttcttattttcaccattttgtgaccatttttacccat
tttcctaagaaatcgggtgttttcgagtccgtaaagccttaaaatgttct
taacttgttcttaacatttttgcgaCCGAAGCCTTTTTTCATATACggtt
tgttcttatttaaaaaaaaaaacgtgtacctaaAATACCTGGATAATATT
TCCTTTTCGAGATGAGAAGAATGACTTGTTTTGACTTACCCAAATTTCAA
TTTATAGGCTAtacatattttatattttttacctgCTTTATTAAGAAGTG
TTTTTACCTCgagatttgaaatatttatgtTTGATTATAcgttatatatt
attttttttggaaaatttcttttgacaCTAAAACTTTCATGATTGAATTC
TCTAGCCAATTCATATACAATTACAAAATTTCGAAAGGCTTATATACTTT
TAAACTGATAGCCTTTGTACATGATTTTATTAAGATTGCTTATGTAAAAG
ATTTAGG
Run BLAST on NCBI

transcript from alignment at sc0000203:251631..255581-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015056 ID=TCONS_00015056|Name=TCONS_00015056|organism=Clytia hemisphaerica|type=transcript|length=3951bp|location=Sequence derived from alignment at sc0000203:251631..255581- (Clytia hemisphaerica)
GAATTTTATGACCATATGACAGCTTTCTCATATAGACCACATATAAGTTG
TTTTAACATCATATCTAACAAGATTTTCTTTCGCTATCTGTATGTATTTC
TTCTATGGGGCCATGCTGCCAGTCTGTCAAAACTCACTGCAGTAGAGCAG
ATTTCTGTCTCGCCTTCTCAATGCATGTATGTATGTTTTTTGTTTTGATT
TTCAGACTCGTCATAATAAATGTTCGTGTGTGTTATAATGTTTCCGTTAT
AAATTTTGAAAAGTTCTCATCAAGCATTTTCAATGTAATATTTTTTCTTC
TCACATCAAAAGTAGTTGTAATTTTTTTCTCTTATTAAAGAGGGCTAAGA
GGCNTTTTCTTCTCGCGTTATAAGTAGTTGTAATTTTTTTCTCTTATTGA
AGAGGCATAAGAGGTCTTGAGAACAGGAAATGAAAAGAATTCAGTACTAC
GTCTCTCTATGTCATTTTTCGAGTTGTTTTGGAACTATTCGTTTGTCTTG
CACTATGATGAAAACATGTACTGTAGTGTGTGGGAAAGGTCATGTGAAGT
TATGTTGTTAGGTTTGTATTCTATTCGTCATGAACTTTTTAGACACATTC
TAACGGAACTAGGTACTCAATCATGTTTGTTTTTCTTTAGTGTATTTCAT
TTTGTGGAGAATCTTATTATCCTTGAAGAACTCTTCTATGTTCTCTGCCT
TGGTAATAAAGTTGTGGCCGACCGTAGGGGTGGAAAATCTCATGTTTGNC
CTTGGTAATAAAGTTGTGGCCGACCGTGGGGGTGGAAAATCTCATGTTTA
GTTTGTTGTCTATAATTTTTTTAGTTGCCAGTTAGCACGCCCAGTTGAAT
GCGTGCATAAATAGATGCCATCTTTCTTGGGGATGGACATGGATAATGGA
TATTAGTTTTGATAAAAGATAAGAATATTTTCAATTTTGAAGAAGTAAAT
TTTCAAAGACGTTGAATTGCACAAAAGAGACACCTTTTTCATAAGGATGC
CGTTTTGTTTTGCTTGTAGTCTAGGTTGTTAACGTTTTATTACTAAACCT
TCATTTTGACATTCGTGGCTTTTTTCGCGGTTAAGGATTAGAGCTACGAT
GGGCGGAAGTTGATAATGCTTTAATACTTCCGTTACGCAACTGCAGTTTT
GAAACTTGTGGTTGGAAAGATCTTTTGTGTGCTCTTGTTTTCGATTATGA
TAGTTTCAGTAAATAATGATTAATTAATTAAGAGTTTAATTATGATGACT
TTATTGGACATTTCCAGAGAGTTATTTTAGAAACTGAACACATGTAGTAA
TAACGGCAGACGACGGCTGATCTTTACTTTCACGCAAAAATGGGGAAAAT
CTATAACATTTTTCATCATTCTGATTCTAAGTTTTTGTTATTTCGCGTAG
AAACTGACCCTAGTATTTGTGGGGTTTAAAAATAGTGAGACACACACTAG
GAAAACAAATTTGTGCCAGTTTTGGAGAGATTGACTTATAGAAGCTTGTT
TTAAATAATGGTCAATTTATGGAGACTGTAATGTTACTCTTGGGTACCTA
ATATTCGGGGAGGGGGGTTGGAAAATTTTCGAAAAATTAATTAGCGGGGT
GGACGGCTATTAGAAACCCGAGAGTGGTAGTTTTCATGACACAATGTTAC
TGAATTGACACACACAAAACATAATATCTTAATCAAAACATCAAAGGAAA
GGTTTAATGACTTTGACATTTTCGACGTAATACAGCNATATCTTAATCAA
AACATCAAACGAAAGGTTTAATGACTTTGACATTTTCGACGTAATACAGC
TTGTCTTTTTGACAGATGAGATGCTGTAATGTTCAAATAAAATGCCGTAA
CATCTGCCTTTTCATGTTTGTTCACGTATACGGTTTGAATACATAAGTCA
CCTGTCATTTATGAGAAATCATATAATTTGAATGTTGTTTTATACATATG
TGAGGTGCCATTTAAGATGACATTGTTTATTTGATTGTCAACCTTGAAGG
GTGGCTTACTTACCACTCTAACTTTATTTGTTGCGAATAAGTTTATATGA
TTGTGACTTTTTTTAGAAACGTTCAACCTGCTTTTACCTCTAGTTTAACC
AACGGATAGCGATTTTCTCAAAGCTTTTAGTATAAACTCAAGGCTTTAGC
CTCTCCACTTTCACTTTAGTATCCCTGGATTTCAATCATTTTATAAATAT
AAATATTCTTCTCGTTTTAGAAAATCAAAGATTGTTTGGATTTTAACTTG
AAAAAGATGCGTAAGAAAAGCGTCAGTTGCGTCAATTTACGCCGGAGATT
CGACAGCAAGAACAATTCGTGTCATAATAACACCAATCAAAAATACGACA
AAGTAAATAGCGAAATATTTATATGTACAAAGAAAATTGATGATGGAATT
TTACCGTTGTTAGAGAGTGCTGGCTCCTTATCTAGCTTTAATAGTTTCAC
ACCTGCAACGGAAGAAAGCTTTTTATTGGAGAGCTCGGATGAGGCGCCAA
ATACGAATAAATCATCGGATTATGAGAACTGTAACAAACGTCGAACCAGG
GGTAAAATAAGATGTCTAAAACACCGTCCGCACTCATTATCTTTATCCGA
ACGGAATTTGACAACCCGATTACAAGAGAACGTTAAACCCGATTCGGAAT
CAAGCAAAGACAATAATTCATCTTTATGCAAATCGAAAACAAATCTTACA
AAGTGTTCGCATAATACTGAAGATGCGCATTGTTGTGGGCAGCAAAAACA
CAAGAAATCTTTGAAATCGAACGAATTGATAGACTCGCCTACCCAAGAGA
ATAATAACAATAATGATACCATTAACGAAGAAGCACAGATTTCTTTCAGT
AAAGAACAACGCAGACGTTTAAAACAGAAAATGAGACAGCGACAGAAGTT
TCAGGATAAATCGGTTTTCCTTGGTCTTTTTTAAACGCGTGCCTATTCTA
CATCTATTGCAGATCGTTTTATTTTTTATATATACGCAGTTCTTTGGTTT
CATACATTTTCTTTTTGATAACATACGATGGTGAATTTTAATCCGCCACA
GAACACGACGTACGTTTTACCCCGTTTATATATCATGATATTTTCTTTTG
ATGCTATATAATAGTTGTTATATAAAATCTTTGACTCGAAGCTTAGAACC
AAATATCATTTTACCAAAGTCTCTTCTGTCGATTGGTTAAATCTCGAAAT
TTCCTTTCTTTTCGATTATATTCATACGTTTTCGTGTCCTCAAATTCTAA
TTCTACTGATTGAGAAGACTCATTATCGTACAACAGCATAAAATTTCTAA
CCCCCTTGAATTATGTTGTTTATTCGCAATTGTTAACTCAAGATTATGTC
ATCTTTCCTGTATGAAATACACGTTTTTTTTTATAAGAGCATCCAAAAAT
TTTGTTTAAACTCTTCGGATCTTTTTCAGTTTTAAGCCAAAAAATATTCT
TAACATGTTCTTATTTTCACCATTTTGTGACCATTTTTACCCATTTTCCT
AAGAAATCGGGTGTTTTCGAGTCCGTAAAGCCTTAAAATGTTCTTAACTT
GTTCTTAACATTTTTGCGACCGAAGCCTTTTTTCATATACGGTTTGTTCT
TATTTAAAAAAAAAAACGTGTACCTAAAATACCTGGATAATATTTCCTTT
TCGAGATGAGAAGAATGACTTGTTTTGACTTACCCAAATTTCAATTTATA
GGCTATACATATTTTATATTTTTTACCTGCTTTATTAAGAAGTGTTTTTA
CCTCGAGATTTGAAATATTTATGTTTGATTATACGTTATATATTATTTTT
TTTGGAAAATTTCTTTTGACACTAAAACTTTCATGATTGAATTCTCTAGC
CAATTCATATACAATTACAAAATTTCGAAAGGCTTATATACTTTTAAACT
GATAGCCTTTGTACATGATTTTATTAAGATTGCTTATGTAAAAGATTTAG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008425XLOC_008425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015056-exon-sc0000203-1575043694:255406..255581TCONS_00015056-exon-sc0000203-1575043694:255406..255581Clytia hemisphaericaexon
TCONS_00015056-exon-sc0000203-1575043694:251631..253361TCONS_00015056-exon-sc0000203-1575043694:251631..253361Clytia hemisphaericaexon
TCONS_00015056-exon-sc0000203-1510915933:255406..255581TCONS_00015056-exon-sc0000203-1510915933:255406..255581Clytia hemisphaericaexon
TCONS_00015056-exon-sc0000203-1510915933:251631..253361TCONS_00015056-exon-sc0000203-1510915933:251631..253361Clytia hemisphaericaexon
TCONS_00015056-exon-sc0000203-1491911889:255406..255581TCONS_00015056-exon-sc0000203-1491911889:255406..255581Clytia hemisphaericaexon
TCONS_00015056-exon-sc0000203-1491911889:251631..253361TCONS_00015056-exon-sc0000203-1491911889:251631..253361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:251631..255581 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29159	0.689252	0	1.07607	16.8903	12.3451	12.0599	13.2031	0.519834	0.284811	2.17648e-07	1.26306	0.54956	1.09844	0.762242	1.70401e-07	2.05669	3.07203	0.774744	0.285981	2.06248	1.19582	4.58666	3.3255	5.48399	7.17401	1.44771	0.848624	0.972641	1.92116
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top