|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015056 ID=TCONS_00015056|Name=TCONS_00015056|organism=Clytia hemisphaerica|type=transcript|length=1907bp
GAATTTTATGACCATATGACAGCTTTCTCATATAGACCACATATAAGTTG
TTTTAACATCATATCTAACAAGATTTTCTTTCGCTATCTGTATGTATTTC
TTCTATGGGGCCATGCTGCCAGTCTGTCAAAACTCACTGCAGTAGAGCAG
ATTTCTGTCTCGCCTTCTCAATGCATaaaatcaaagattgTTTGGATTTT
AACTTGAAAAAGATGCGTAAGAAAAGCGTCAGTTGCGTCAATTTACGCCG
GAGATTCGACAGCAAGAACAATTCGTGTCATAATAACACCAATCAAAAAT
ACGACAAAGTAAATAGCGAAATATTtatatgtacaaagaaaattgatgat
GGAATTTTACCGTTGTTAGAGAGTGCTGGCTCCTTATCTAGCTTTAATAG
TTTCACACCTGCAACGGAAGAAAGCTTTTTATTGGAGAGCTCGGATGAGG
CGCCAAATACGAATAAATCATCGGATTATGAGAACTGTAACAAACGTCGA
ACCAGGGGTAAAATAAGATGTCTAAAACACCGTCCGCACTCATTATCTTT
ATCCGAACGGAATTTGACAACCCGATTACAAGAGAACGTTAAACCCGATT
CGGAATCAAGCAAAGACAATAATTCATCTTTATGCAAATCGAAAACAAAT
CTTACAAAGTGTTCGCATAATACTGAAGATGCGCATTGTTGTGGGCAgca
aaaacacaagaaatctTTGAAATCGAACGAATTGATAGACTCGCCTACCC
AAGagaataataacaataatgatACCATTAACGAAGAAGCACAGATTTCT
TTCAGTAAAGAACAACGCAGACGTTTAAAACAGAAAATGAGACAGCGACA
GAAGTTTCAGGATAAATCGGTTTTCCTTGGTCTTTTTTAAACGCGTGCCT
ATTCTACATCTATTGCAGatcgttttattttttatatatacgCAGTTCTT
TGgtttcatacattttctttttgataacaTACGATGGTGAATTTTAATCC
GCCACAGAACACGACGTACGTTTTACCCCGTTTATATATCatgatatttt
cttttgatgCTATATAATAGTTGTTATATAAAATCTTTGACTCGAAGCTT
AGAACCAAATATCATTTTACCAAAGTCTCTTCTGTCGATTGGTTAAATCT
CGAAATTTCCTTTCTTTTCGATTATATTCATACGTTTTCGTGTCCTCAAA
TTCTAATTCTACTGATTGAGAAGACTCATTATCGTACAacagcataaaat
ttctaacCCCCTTGAATTATGTTGTTTATTCGCAATTGTTAACTCAAGAT
TATGTCATCTTTCCTGtatgaaatacacgtttttttttataagagcatcc
aaaaattttgtttaaacTCTTCGgatctttttcagttttaagccaaaaaa
tattcttaacatgttcttattttcaccattttgtgaccatttttacccat
tttcctaagaaatcgggtgttttcgagtccgtaaagccttaaaatgttct
taacttgttcttaacatttttgcgaCCGAAGCCTTTTTTCATATACggtt
tgttcttatttaaaaaaaaaaacgtgtacctaaAATACCTGGATAATATT
TCCTTTTCGAGATGAGAAGAATGACTTGTTTTGACTTACCCAAATTTCAA
TTTATAGGCTAtacatattttatattttttacctgCTTTATTAAGAAGTG
TTTTTACCTCgagatttgaaatatttatgtTTGATTATAcgttatatatt
attttttttggaaaatttcttttgacaCTAAAACTTTCATGATTGAATTC
TCTAGCCAATTCATATACAATTACAAAATTTCGAAAGGCTTATATACTTT
TAAACTGATAGCCTTTGTACATGATTTTATTAAGATTGCTTATGTAAAAG
ATTTAGG Run BLAST on NCBI transcript from alignment at sc0000203:251631..255581- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015056 ID=TCONS_00015056|Name=TCONS_00015056|organism=Clytia hemisphaerica|type=transcript|length=3951bp|location=Sequence derived from alignment at sc0000203:251631..255581- (Clytia hemisphaerica)
GAATTTTATGACCATATGACAGCTTTCTCATATAGACCACATATAAGTTG
TTTTAACATCATATCTAACAAGATTTTCTTTCGCTATCTGTATGTATTTC
TTCTATGGGGCCATGCTGCCAGTCTGTCAAAACTCACTGCAGTAGAGCAG
ATTTCTGTCTCGCCTTCTCAATGCATGTATGTATGTTTTTTGTTTTGATT
TTCAGACTCGTCATAATAAATGTTCGTGTGTGTTATAATGTTTCCGTTAT
AAATTTTGAAAAGTTCTCATCAAGCATTTTCAATGTAATATTTTTTCTTC
TCACATCAAAAGTAGTTGTAATTTTTTTCTCTTATTAAAGAGGGCTAAGA
GGCNTTTTCTTCTCGCGTTATAAGTAGTTGTAATTTTTTTCTCTTATTGA
AGAGGCATAAGAGGTCTTGAGAACAGGAAATGAAAAGAATTCAGTACTAC
GTCTCTCTATGTCATTTTTCGAGTTGTTTTGGAACTATTCGTTTGTCTTG
CACTATGATGAAAACATGTACTGTAGTGTGTGGGAAAGGTCATGTGAAGT
TATGTTGTTAGGTTTGTATTCTATTCGTCATGAACTTTTTAGACACATTC
TAACGGAACTAGGTACTCAATCATGTTTGTTTTTCTTTAGTGTATTTCAT
TTTGTGGAGAATCTTATTATCCTTGAAGAACTCTTCTATGTTCTCTGCCT
TGGTAATAAAGTTGTGGCCGACCGTAGGGGTGGAAAATCTCATGTTTGNC
CTTGGTAATAAAGTTGTGGCCGACCGTGGGGGTGGAAAATCTCATGTTTA
GTTTGTTGTCTATAATTTTTTTAGTTGCCAGTTAGCACGCCCAGTTGAAT
GCGTGCATAAATAGATGCCATCTTTCTTGGGGATGGACATGGATAATGGA
TATTAGTTTTGATAAAAGATAAGAATATTTTCAATTTTGAAGAAGTAAAT
TTTCAAAGACGTTGAATTGCACAAAAGAGACACCTTTTTCATAAGGATGC
CGTTTTGTTTTGCTTGTAGTCTAGGTTGTTAACGTTTTATTACTAAACCT
TCATTTTGACATTCGTGGCTTTTTTCGCGGTTAAGGATTAGAGCTACGAT
GGGCGGAAGTTGATAATGCTTTAATACTTCCGTTACGCAACTGCAGTTTT
GAAACTTGTGGTTGGAAAGATCTTTTGTGTGCTCTTGTTTTCGATTATGA
TAGTTTCAGTAAATAATGATTAATTAATTAAGAGTTTAATTATGATGACT
TTATTGGACATTTCCAGAGAGTTATTTTAGAAACTGAACACATGTAGTAA
TAACGGCAGACGACGGCTGATCTTTACTTTCACGCAAAAATGGGGAAAAT
CTATAACATTTTTCATCATTCTGATTCTAAGTTTTTGTTATTTCGCGTAG
AAACTGACCCTAGTATTTGTGGGGTTTAAAAATAGTGAGACACACACTAG
GAAAACAAATTTGTGCCAGTTTTGGAGAGATTGACTTATAGAAGCTTGTT
TTAAATAATGGTCAATTTATGGAGACTGTAATGTTACTCTTGGGTACCTA
ATATTCGGGGAGGGGGGTTGGAAAATTTTCGAAAAATTAATTAGCGGGGT
GGACGGCTATTAGAAACCCGAGAGTGGTAGTTTTCATGACACAATGTTAC
TGAATTGACACACACAAAACATAATATCTTAATCAAAACATCAAAGGAAA
GGTTTAATGACTTTGACATTTTCGACGTAATACAGCNATATCTTAATCAA
AACATCAAACGAAAGGTTTAATGACTTTGACATTTTCGACGTAATACAGC
TTGTCTTTTTGACAGATGAGATGCTGTAATGTTCAAATAAAATGCCGTAA
CATCTGCCTTTTCATGTTTGTTCACGTATACGGTTTGAATACATAAGTCA
CCTGTCATTTATGAGAAATCATATAATTTGAATGTTGTTTTATACATATG
TGAGGTGCCATTTAAGATGACATTGTTTATTTGATTGTCAACCTTGAAGG
GTGGCTTACTTACCACTCTAACTTTATTTGTTGCGAATAAGTTTATATGA
TTGTGACTTTTTTTAGAAACGTTCAACCTGCTTTTACCTCTAGTTTAACC
AACGGATAGCGATTTTCTCAAAGCTTTTAGTATAAACTCAAGGCTTTAGC
CTCTCCACTTTCACTTTAGTATCCCTGGATTTCAATCATTTTATAAATAT
AAATATTCTTCTCGTTTTAGAAAATCAAAGATTGTTTGGATTTTAACTTG
AAAAAGATGCGTAAGAAAAGCGTCAGTTGCGTCAATTTACGCCGGAGATT
CGACAGCAAGAACAATTCGTGTCATAATAACACCAATCAAAAATACGACA
AAGTAAATAGCGAAATATTTATATGTACAAAGAAAATTGATGATGGAATT
TTACCGTTGTTAGAGAGTGCTGGCTCCTTATCTAGCTTTAATAGTTTCAC
ACCTGCAACGGAAGAAAGCTTTTTATTGGAGAGCTCGGATGAGGCGCCAA
ATACGAATAAATCATCGGATTATGAGAACTGTAACAAACGTCGAACCAGG
GGTAAAATAAGATGTCTAAAACACCGTCCGCACTCATTATCTTTATCCGA
ACGGAATTTGACAACCCGATTACAAGAGAACGTTAAACCCGATTCGGAAT
CAAGCAAAGACAATAATTCATCTTTATGCAAATCGAAAACAAATCTTACA
AAGTGTTCGCATAATACTGAAGATGCGCATTGTTGTGGGCAGCAAAAACA
CAAGAAATCTTTGAAATCGAACGAATTGATAGACTCGCCTACCCAAGAGA
ATAATAACAATAATGATACCATTAACGAAGAAGCACAGATTTCTTTCAGT
AAAGAACAACGCAGACGTTTAAAACAGAAAATGAGACAGCGACAGAAGTT
TCAGGATAAATCGGTTTTCCTTGGTCTTTTTTAAACGCGTGCCTATTCTA
CATCTATTGCAGATCGTTTTATTTTTTATATATACGCAGTTCTTTGGTTT
CATACATTTTCTTTTTGATAACATACGATGGTGAATTTTAATCCGCCACA
GAACACGACGTACGTTTTACCCCGTTTATATATCATGATATTTTCTTTTG
ATGCTATATAATAGTTGTTATATAAAATCTTTGACTCGAAGCTTAGAACC
AAATATCATTTTACCAAAGTCTCTTCTGTCGATTGGTTAAATCTCGAAAT
TTCCTTTCTTTTCGATTATATTCATACGTTTTCGTGTCCTCAAATTCTAA
TTCTACTGATTGAGAAGACTCATTATCGTACAACAGCATAAAATTTCTAA
CCCCCTTGAATTATGTTGTTTATTCGCAATTGTTAACTCAAGATTATGTC
ATCTTTCCTGTATGAAATACACGTTTTTTTTTATAAGAGCATCCAAAAAT
TTTGTTTAAACTCTTCGGATCTTTTTCAGTTTTAAGCCAAAAAATATTCT
TAACATGTTCTTATTTTCACCATTTTGTGACCATTTTTACCCATTTTCCT
AAGAAATCGGGTGTTTTCGAGTCCGTAAAGCCTTAAAATGTTCTTAACTT
GTTCTTAACATTTTTGCGACCGAAGCCTTTTTTCATATACGGTTTGTTCT
TATTTAAAAAAAAAAACGTGTACCTAAAATACCTGGATAATATTTCCTTT
TCGAGATGAGAAGAATGACTTGTTTTGACTTACCCAAATTTCAATTTATA
GGCTATACATATTTTATATTTTTTACCTGCTTTATTAAGAAGTGTTTTTA
CCTCGAGATTTGAAATATTTATGTTTGATTATACGTTATATATTATTTTT
TTTGGAAAATTTCTTTTGACACTAAAACTTTCATGATTGAATTCTCTAGC
CAATTCATATACAATTACAAAATTTCGAAAGGCTTATATACTTTTAAACT
GATAGCCTTTGTACATGATTTTATTAAGATTGCTTATGTAAAAGATTTAG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015056-exon-sc0000203-1575043694:255406..255581 | TCONS_00015056-exon-sc0000203-1575043694:255406..255581 | Clytia hemisphaerica | exon |
| TCONS_00015056-exon-sc0000203-1575043694:251631..253361 | TCONS_00015056-exon-sc0000203-1575043694:251631..253361 | Clytia hemisphaerica | exon |
| TCONS_00015056-exon-sc0000203-1510915933:255406..255581 | TCONS_00015056-exon-sc0000203-1510915933:255406..255581 | Clytia hemisphaerica | exon |
| TCONS_00015056-exon-sc0000203-1510915933:251631..253361 | TCONS_00015056-exon-sc0000203-1510915933:251631..253361 | Clytia hemisphaerica | exon |
| TCONS_00015056-exon-sc0000203-1491911889:255406..255581 | TCONS_00015056-exon-sc0000203-1491911889:255406..255581 | Clytia hemisphaerica | exon |
| TCONS_00015056-exon-sc0000203-1491911889:251631..253361 | TCONS_00015056-exon-sc0000203-1491911889:251631..253361 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000203 | supercontig | sc0000203:251631..255581 - |
Blast
The following BLAST results are available for this feature:
|
