TCONS_00015018 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015018
Unique Name	TCONS_00015018
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	480

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000203:19364..24154+

transcript sequence

>TCONS_00015018 ID=TCONS_00015018|Name=TCONS_00015018|organism=Clytia hemisphaerica|type=transcript|length=480bp
GAGGAACGTTAATTCTACTTCTTTGGACAAATATTTCTTTGTCACATATT
TTGAGATTGCCAGAATGCAATAATTATGAcgcaaagttttcaaaaatatc
atacCATCAACGCTTAATTGgagatattttgaaaactttagaCTTTATCT
CACTGCGAAAATGTTTGACAAAATGTATGTGGCATCCGAGATGCCAATCA
GTGAATTTCAAGAGACAAAATGAAACTTGTGAGTTATTAGGTAATTCTTT
ACAAAGTAATTTAACAGGGAATGTTTTGTCTGTACCACAAACTGGATGGA
TCCATTTTGAAACGGACTATGACGAAAAAACGTTGGGTCGATGGTGTAGC
AATGGCAATAACAACCCTTGTAATATGATCACAGAACGTTGTGAAGACAG
ATGCGTTGGCAATTATCAATGTGTCCAGCATGGTGaatcTCTTCAATTAT
ACATCAAAGATATCCAAGGATCTTCTACAC

Run BLAST on NCBI

transcript from alignment at sc0000203:19364..24154+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015018 ID=TCONS_00015018|Name=TCONS_00015018|organism=Clytia hemisphaerica|type=transcript|length=4791bp|location=Sequence derived from alignment at sc0000203:19364..24154+ (Clytia hemisphaerica)
GAGGAACGTTAATTCTACTTCTTTGGACAAATATTTCTTTGTCACATATT
TTGAGATTGCCAGAATGCAATAATTATGAcgcaaagttttcaaaaatatc
atacCATCAACGCTTAATTGgagatattttgaaaactttagaCTTTATCT
CACTGCGAAAATGTTTGACAAAATGTATGTGGCATCCGAGATGCCAATCA
GTGAATTTCAAGAGACAAAATGAAACTTGTGAGTTATTAGGTAATTCTTT
ACAAAGTAATTTAACAGGGAATGTTTTGTCTGTACCACAAACTGGATGGA
TCCATTTTGAAACGGACTATGACGAAAAAACGGTAAGTCTATTTTAAAAA
CCAGTGATAAATTCGTAATTGAAGAAATTACTTATAAATAAcGTTTCATT
GGCCAAAATTAATTATCAacgaatttaaaaaagttttttaattcgCCAAA
ATGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGAAAGTCAACCATCCCATGATAtgacactcgtcccaagttagagcc
gttgacggtatgccggatatccaaaacaataacaatccatTATATGATAT
ACACAATCATATGTCAATGTCATAaggcaatttcaattttttgcggtact
ttcaaaatttcagaatttttgggcaCTTTCTTTGGATTCGCTTATCCTTT
TCTTGTCCTGGATCCAATCAAAACCTGCACGTAAAACATACCTCAAAATC
AGTCACGTTTATAACATTATAACTCGGTCTTTGACGACTGGGAAGATTCA
AcgacaaaattttgagagttaaagTAAAGTTTATCCCTCAGCGCATTCAG
TGATGAATCCGATCTGACCGTTAGTGTCTCTTCAGCCatttttgagatga
ataaaatgaatcatgaaatttttgttatctaaagggatgggtgaaacNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTCAATGCGatcgaaaaaaatctt
tctcagCTGAATTCCATGATAGGGAATGTTTGTGAAGCTATTATAGTCAT
TGTTTGCACCAATATAAAGTTACTTCAGCAAGTCATTAGTCTCCATCAAC
AGCTTTCGAAAGCAGCGAAATCGACGAAACTACTTGAGTgaagtttgtaa
acaaaaaagcaagTTTCACACATTCATTATGTTCAAAAAGTANNCGCCTC
GATTTTTGTCCCGACACGCACATCAActgcagcgcagcgagcggctccag
aatttggctaatattgcataccaaaatttgatggtgatttaaaaaaacat
tagaatatTAAGTCAATTgtattatgggcatgaaatcctgaaaaatacaa
atattgttttgggaatggatttttagcaagtatttgatcaattgaatcac
ggTTCAGCACCCGAATTGAAATTTCACAGTTTAAGTAAGTTGTGAGCAAG
GAGTCgatgtttgtaggttttaaggagTAATagtgtattttgattttaac
gtacagttttgaaaatatttaggtaccaatgATTTAATTGTAACATAagt
aactttgcagtgaatcactgttaAAAATTTGAGATACCAAATGGACTATT
TCGCATAAAAAATTAttcgagaaaaataattttgtaggttttaaggggta
tccactggtatttTGAAAATANGAAATGAttcgagaaaaataattttgta
ggttttaaggggtatccactggtatttTGAAAATACACAACAGGTACCCT
AGCATTAGTGGTACATATCCTCCACAACTGAGGCGAGAAGGATGAAGGCA
CCATCTATAGTAAAAAAAGGGTGACTATGTGACAGGATACTTGAAAACTT
CATAAAATACAatcaaatcttttcatctaGTTGGGTCGATGGTGTAGCAA
TGGCAATAACAACCCTTGTAATATGATCACAGAACGTTGTGAAGACAGAT
GCGTTGGCAATTATCAATGTGTCCAGCATGGTGGTAAGAAACAAAGTATT
TTCGAGAACCTTTTCGGATAATTTCATGCGTCTCCGGGGAGAGGGATGGT
ACTAGGATTTAAATGAATTTCGtaaattttgtacattttctgACGTTTTT
GCCCTCCCTAAAGAGactatttccccaaaatttcatcaaaagttttcaaa
ttttagtccaaatttcaagaatttatgaccctttaaGAGAGTCAATTTTT
GTTCTCGTAatttacagagactcaatttgctttttaatggttttgtaacc
ctttgaggaactttcgagggtgtgaaaaagggacccttatggctcccGTT
TTGCCTAAGTAGCCCCAACCCCCGGGTGCGTCTCACGAACAGTTTAGAAT
CCCAACACTAAAAGCCTACATCCAAAAAAATGAGCAGAGCCCAAGAATCA
TGTAAATTATACGATTAAATATCATCTTAGCGATGCACCACAGAAATAAG
TGATATTTTCATAGCGGAATTCTATTTAATCGAATAGAAAATTTGGAGGA
AACAAATTTGTttagggaactttttttggcgggaactaattttggcggga
actaattttggcgggcagcAAATGTCCTCAATTTTTTCAagtttggcggg
aacttattttggcgaatagttAGACTAGTATAGTCGTTGAATGAAAAACA
TCACACCGGAAAATCTTACTAGAGTGGTAAAATCGGGAAACCGTATCTAG
AACGATATTCTCAAATGTTATTTTCCTTCTCTCTCGCACACTAATTCCCG
TGTGAACGTTTTTCCGATTATACCTAGCCNGTTATTTTCCTTCTCTCTCG
CATGCTAATTCCCGTGTGAACGTTTTTCCGATTATACCTAGCCAGTACCC
GACTCCTAAATTTTGTTGTGCACGGTAAATAACAGACTTGTTTACAAGTC
Tagcgaatagtgaatttttttaatttttgtaggaactaattttggcgaat
gacagcgtaaatctgctctattttgccttattttgagcaattttgaagaa
tttcaggggttatttagacAAGGAAAGTTAGTTAAGTTACACAACTTTGC
ATCGAAGATAAATCCGTGTTTCACAAAACGGCTAAGATGgctatttgata
aatttttatttatgttGTCTTAAACatctaattcaatttttttcagaatc
TCTTCAATTATACATCAAAGATATCCAAGGATCTTCTACAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008409	XLOC_008409	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015018-exon-sc0000203-1491911889:19364..19695	TCONS_00015018-exon-sc0000203-1491911889:19364..19695	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1510915933:19364..19695	TCONS_00015018-exon-sc0000203-1510915933:19364..19695	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1575043694:19364..19695	TCONS_00015018-exon-sc0000203-1575043694:19364..19695	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1491911889:22844..22946	TCONS_00015018-exon-sc0000203-1491911889:22844..22946	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1510915933:22844..22946	TCONS_00015018-exon-sc0000203-1510915933:22844..22946	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1575043694:22844..22946	TCONS_00015018-exon-sc0000203-1575043694:22844..22946	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1491911889:24110..24154	TCONS_00015018-exon-sc0000203-1491911889:24110..24154	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1510915933:24110..24154	TCONS_00015018-exon-sc0000203-1510915933:24110..24154	Clytia hemisphaerica	exon
TCONS_00015018-exon-sc0000203-1575043694:24110..24154	TCONS_00015018-exon-sc0000203-1575043694:24110..24154	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000203	supercontig	sc0000203:19364..24154 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.062563	0.148228	0	0	0	0	0	0.778217	0	0.0392733	0.0659761	7.12063	3.3694	2.6711	1.4339	1.42914	0.516037	8.5912	6.39039	2.18656	3.49739	0	1.12732	0.63726	0.717321	0.423102	0.0685034	0.111211	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00015018 vs. Swiss-Prot (Human)

BLAST of TCONS_00015018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00015018 (transcript) - C. hemisphaerica