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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014936 ID=TCONS_00014936|Name=TCONS_00014936|organism=Clytia hemisphaerica|type=transcript|length=2616bpRun BLAST on NCBI protein sequence of TCONS_00014936-protein >TCONS_00014936-protein ID=TCONS_00014936-protein|Name=TCONS_00014936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=756bp MCSFVDKVGVPEKLLEFYQKQQRKLAFKKIDASSDSQGPRNFFLSIVKEKRun BLAST on NCBI transcript from alignment at sc0000201:186713..213176+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014936 ID=TCONS_00014936|Name=TCONS_00014936|organism=Clytia hemisphaerica|type=transcript|length=26464bp|location=Sequence derived from alignment at sc0000201:186713..213176+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000201:186713..213176+ >TCONS_00014936 ID=TCONS_00014936|Name=TCONS_00014936|organism=Clytia hemisphaerica|type=CDS|length=47691bp|location=Sequence derived from alignment at sc0000201:186713..213176+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014936 vs. Swiss-Prot (Human)
Match: TMM94 (Transmembrane protein 94 OS=Homo sapiens GN=TMEM94 PE=1 SV=1) HSP 1 Score: 337.421 bits (864), Expect = 1.679e-98 Identity = 251/790 (31.77%), Postives = 398/790 (50.38%), Query Frame = 2
Query: 83 LCEILXQQLSLAGNSNVVP-HRRSCMCSFVDKVGVPEKLLEFYQKQQRKLAFKKIDASSDSQGPRNFFLSIVKEKHIP--HMISTLLSDGSSDLCQLFTQGSGDLILDACTDLWNGEELSPFKDSEKKKALNFFQRMNITRDCIAFAYRPVFQKPMGWRDEYFEFGES-KPVKKSQEDSFFGLQFCQDMSDTSLK--CKDQDLSSDEMMNSIKIAPELLDKDVKMQIFLGMMTMVHALKEDVINMIDTLHFAGIRFVHYSYENELLSRVFCQRLGLETGWNCHISLGEGCCTTIMDDRSSSLVSEACPLLPKDDDNERPRSKRFDTQTSVSFSKQDTVDIXXXXXXXXXXXXXXXXXXXXXXYFEPYFM--SNRSKLPKGIQKMRSHLSEIDDVPLLVPLFTECNSQGVKEMTCIRQEYGDIVCCFGSSLNAYNYKIFAQSDVSIGLEPILPKVCNSRNRHNTRTANEHELDTSRDSELMVENGPLSLSANLNSMMCSLKSRRKDPFPISSLICEARRXXXXXXXXXXXXXXXXXXXXXXQMTSCVFFLPPPLTGLQTLWLVVVILPSISISLVGTPAHDNIMKVLTGKRAKTRVKFYKELMKPFLKMFFPTFGLHVLFMVVIVFPWLLYHVCQMEHGE----CQSWFLGNKNSTSETWYGIKESSLYLVQDVFLFILTLSFVVLSANFLTRKSVLWKSPPYLNKPWCLSVFVTLLLQVLCNFVSYHFW--KGDPFSISVSDMPMVLYAVVIVCLMVLLLFGELVKRRFIRDFKRFQKREKLKFDTKLGM 2410
LC I Q+ +S V+P H +C +G E + KQ+ LA ++ ++ + LS V ++ P HMIS + D ++ Q+ + G+ D++L+ACTD W+G ++ P S++KK L+F+QR ++ C AFAY KPM G+ + V+ + S F + C+ S +K + SSDE + + + E + + QIF+GM++ + + D++ +ID L A IRFV++S E+EL S+VF +++GLETGWNCHISL T D S + + P ++ + R D + + ++ D+ + +S+ P F+ SNR+KLP+GI ++R HL ID+VPLLVPLFT+C + + EM I QEYG++ CC GSS N N +F QSD+SI L+P+ P C+ + + ++ S+ + PL LS LNS+ CSL R+++ I LI +AR G FLFL L + ++Q SC+ LPP L+ LWL P +SISL+G P H +IM + TGK ++ K+ FL F F L + +I F + L C C S L + + + W+ + L Q + ++ L V +S + R LW+ P N W ++V V LL QV+ V W + + D+P++ + + + L+++++ E+VK IR R+QKR+KL+F+TKLGM
Sbjct: 609 LCNIALQE----SHSAVLPVHVPWGLCELARLIGFTPGAKELF-KQENHLALYRLPSAETMKETSLGRLSCVTKRRPPLSHMISLFIKDTTTSTEQMLSHGTADVVLEACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAY-----KPMNCALSSQLNGKCIELVQVPGQSSIFTM--CELPSTIPIKQNARRSSWSSDEGIGEV-LEKEDCMQALSGQIFMGMVSSQYQARLDIVRLIDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHISL------TPNGDMPGSEIPPSSPSHAGSLHDDLNQVSRDDAEGLLLMEEEGHSDLISFQPTDSDI---------------PSFLEDSNRAKLPRGIHQVRPHLQNIDNVPLLVPLFTDCTPETMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDISIALDPLYPSRCSWETFGYATS-----ISMAQASDGL---SPLQLSGQLNSLPCSLTFRQEETISIIRLIEQARHATYGIRKCFLFLLQCQLTLVVIQFLSCLVQLPPLLSTTDILWLSCFCYPLLSISLLGKPPHSSIMSMATGKNLQS---IPKKTQHYFLLCFLLKFSL-TISSCLICFGFTLQSFCDSSRDRNLTNCSSVMLPSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISITHVHRTKPLWRKSPLTNLWWAVTVPVVLLGQVVQTAVDLQLWTHRDSHVHFGLEDVPLLTWLLGCLSLVLVVVTNEIVKLHEIRVRVRYQKRQKLQFETKLGM 1352 The following BLAST results are available for this feature:
BLAST of TCONS_00014936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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