|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014858 ID=TCONS_00014858|Name=TCONS_00014858|organism=Clytia hemisphaerica|type=transcript|length=8359bp protein sequence of TCONS_00014858-protein >TCONS_00014858-protein ID=TCONS_00014858-protein|Name=TCONS_00014858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2366bp MSTVDVINGDGYQPQLERGSDMWMEADQSSARMFEKSKISALRDERETVQRun BLAST on NCBI transcript from alignment at sc0000200:262383..305033+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014858 ID=TCONS_00014858|Name=TCONS_00014858|organism=Clytia hemisphaerica|type=transcript|length=42651bp|location=Sequence derived from alignment at sc0000200:262383..305033+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000200:262383..305033+ >TCONS_00014858 ID=TCONS_00014858|Name=TCONS_00014858|organism=Clytia hemisphaerica|type=CDS|length=262737bp|location=Sequence derived from alignment at sc0000200:262383..305033+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014858 vs. Swiss-Prot (Human)
Match: SPTB2 (Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2) HSP 1 Score: 1567.36 bits (4057), Expect = 0.000e+0 Identity = 891/2071 (43.02%), Postives = 1329/2071 (64.17%), Query Frame = 1
Query: 502 DQSSARMFEKSKISALRDERETVQKKTFTKWINSHLQKVSAHINDLYNDLKDGRNLILLLEILSAEKLPKPSKGRMRIHLLENVEKCLVFLKKKEVHLTNVGNHDIVDGNPKITLGLIWTIILRFQIQDLMIEM-DSGEKRSAKEALLLWCQSKTQGYKNVNVTNFTTSWKDGLAFSALIHKHRPDVIAYDKLVKEEPIKNLNVAFDTAERDLGIMRLLDAPDVNVDYPDEKSIMTYVATYYQYFSKQKQVEVSGSRIQKVIKHAVDNEKLVNDYEEMTSSLRQWILERTTKLQDRTFGNSLLTVQQQMAEFNLFRTQEKPPKFVEKCSLEVQMFEIASQLRLNHQKMYEPKDGLLVGEINKLWTLMEQEEHAREVAXXXXXXXXXXXXXXASRFDRKANLRETWLTDYCKLLSVDKFGEDLPAVEASVKKHEAIETDIKAYEARIQGVQKLADKLESENFHRIEWIKTTTQKINDSWAXXXXXXXXXXXXXHKHRELHQIFQEMVFIIDWMDDVKLGLQSEDYGNHLLGVEDLLQKHVLVEADITAQEQRVQQSNRDADEFLEKAAQDDSDGYKP-DVETVKTNQEDLETSYKDVCQLSQKRRQRLEESLKLHTFYRDLEEEDIWLSEKEYFVSSTEYGNDFNXXXXXXXXXXXXXXXXAAKKTLTDKLINES---EXELAAKKTLTDKLINESETLLQEMPYASEKVNEHVSSIQTKWANVDDLSAKRKNRLEEVLRLHQYFADCREIEADLDELEAPISSTDYGHDVDSVNELFKKEKVLEDELNKIANAINDVESQRLETLGDQDRESEDVLKEKEGLDQHYRHLKSELINHHQKLLSRLALYKLYNESDLVSEWIVGRRSQLTTYLKVERTYDMERCKAIQLRFEGFEQELLANQDRMQVVNALASELKEK-FPDEFDPATEERINKVNKSWDXXXXXXXXXXXXXVACLYIQNLYSEMTETRSWMIEKSRLLASVEDPGVDLSSVITLQRRLNTIERDIAALPSKMQDLHAQAVDLSREYPEEAVNIQTRYDDLQECWDSLSSMVKQKNESLAEMGELKRFIMSLDEFLNWLTQTSEQCAVEEFPQSLSEAESLLDAHFDLQKIINDHTEDYNTLMEEGPKYVRDDSNDLQTQSLRQQMQDVEDGWQQLDVLWKTRQDQLKQSMNYQLFLRDAKQCEAFLGQQELYLSRQVETPTADAVQXXXXXXXXXXXXMDTHDEKVNHVRSVADQLNEKGHYAADKVLEKAAYLTERRNTNRANADDLLSKLKDELRLKRFLEDSGEVIDWMNERMHSATDESYKEDTSNMRSKLLKHAAFEAELNANKIKIDALKKTGDXXXXXXXXXXXXXXXQLEQIDQLWDVLNKTSAEKKSHLSEVNRQQQFGNEVTNLDKWITEIHTQLRVKEIGSDITTARALMNKHEKTKNDIAEKRKRMIELCA----------NPDEVDEEKLVAEQQIMEERFIALEEPLQERGIQLNDSKNFYEFKRDIEDAQLWIEEKEPILQSENLGDSLHEVQRMKKRHSNLRNEVDGHEPLITALERRGEEMIA-SNHPDSDALKRLIDALKARWQSLNTLSEDFQGKLDIGLQAKKYYFDAAEAESWMSEKELFLLGDERGKDEEHVQKLLKKHQILEKEINDYEETINKLGDEAKKMIDEEHIESESIQTTQSKIEDLYSQLKDLASEKQSKLDENLKLFHFNREVEDLKSWISDREVIASSEEIGQDFDNVQMIEERFDRFADQTRTIGSERLATVNAMCDQLVSNGHQDAVRLTEWKEDXXXXXXXXXXXXXXRREKLNAAHEMHRYFQEAKLTLVMIEEKDESLTEDLGRDQQSVLALQRLHKAFEADLQPLGQKVEGIQEFSGQLKGQYAGDKLIEILQKEDEVVDAWKALLKRVTGRSLKLGQSDEYQRLIIMIQNLLLWIEDMRLQIESDDQPKDIAHCESLMGTHQDRKSEIDAKADKFKTVEETANELIEKDHYASLEIKDRIDNLMQQRNILDDEWDLHWEELQMTLDVLQFARDAHLADEWIGQNEHVVQGKDSSKSLGEIIKLIEKHNNFER 6663
+ SSAR+FE+S+I AL DERE VQKKTFTKW+NSHL +VS I DLY DL+DGR LI LLE+LS E+LPKP+KGRMRIH LENV+K L FLK++ VHL N+G+HDIVDGN ++TLGLIWTIILRFQIQD+ +E D+ EK+SAK+ALLLWCQ KT GY NVN+ NFTTSW+DG+AF+ALIHKHRPD+I +DKL K NL AF+ AE+ LG+ +LLD D++VD+PDEKSI+TYV TYY YFSK K + V G RI KV+ +A++ EK++ YE + S L +WI + L +R F NSL+ VQQQ+ FN +RT EKPPKF EK +LEV +F I S++R N+QK+Y P++G L+ +INK W +E+ EH RE+ALR ELIRQ++LE+LA RFDRKA +RETWL++ +L+S D FG DLPAVEA+ KKHEAIETDI AYE R+Q V +A +LE+EN+H I+ I + W LL LL R RL + L +IFQEM++I+DWMD++K+ + S+DYG HLLGVEDLLQKH LVEADI Q +RV+ N A +F D +GYKP D + ++ +E Y+++CQL+ +RR RLEES +L F+ ++ EE+ W+ EKE +SS +YG D T +L+++ E E++ + ++ I E E ++ E + SEK+ E + I+ +WAN++ LSA RK RLEE LHQ+ AD +I+A + ++ +SS+D GHD S L KK K + +E+ ++ + Q L + ES DV G+++ Y+ + Q L LALYK+++E+D WI + L E+ D+E IQ RFE E E+ R+ VVN +A +L P E + ++ +K+N W + +E + +K L++ L IQN + E ET+SW+ EK++++ S +D G DL+ V+ LQR+L +ERD+ A+ +K+ DL +A L E+P++A I +R ++ + W+ + + +K + SL E +L++F+ LD+F +WL++T A E+ P +L+EAE LL H +++ I+++ EDY + + G + V D Q LRQ++Q ++ GW +L +W+ RQ+ L QS YQ FLRD KQ EAFL QE L+ T + + IKK E+F+ MD ++EK+N V +L G+ +D++ EK + +R NR A +LL +LKD L++FL+D E+ W+NE+M +A D SY E N+ SK LKH AF AEL +NK +D ++K G +LI EK E V+++L + ++W+VL T+ K L + N+ + F +LDKW+ + +Q++ + G D+T+ L+ K + +N + ++K + EL + + DEVD ++L + + ME L EPL ER L SK ++F RD+ED LW+ E+ P+ S + G +L VQ + K++ L+ E+ GH+P I + R + ++ S+ ++A+++ + LK W L +E +L+ +A++YYFDAAEAE+WMSE+EL+++ +E+ KDE+ +LKKHQILE+ + DY ET+++L ++ ++ + H ESE I QSK++ LY+ LKDLA E++ KLDE +LF NREV+DL+ WI++REV+A S E+GQD+++V M++ERF FA T IG ER+ TVN + D+L+++GH DA + EWK+ LN W LLEL++TR + L A++E+H+++ +AK I++K + L E+LGRDQ +V LQR+H FE D+Q LG +V +QE + +L+ YAGDK +I ++E+EV++AWK+LL R ++L + + R M+++L+LW+ED+ QIE+ ++P+D++ E LM HQ K+EIDA+ D F T E L+ + HYAS EIK+++ L ++R + D+W+ WE L++ L+V QF+RDA +A+ W+ E + ++ +S+ E+ KLI++H FE+
Sbjct: 33 ENSSARLFERSRIKALADEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQAVVAVARELEAENYHDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYIMDWMDEMKVLVLSQDYGKHLLGVEDLLQKHTLVEADIGIQAERVRGVNASAQKF-----ATDGEGYKPCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEKILSSDDYGKDL---------------------TSVMRLLSKHRAFEDEMSGRSGHFEQAIKEGEDMIAEEHFGSEKIRERIIYIREQWANLEQLSAIRKKRLEEASLLHQFQADADDIDAWMLDILKIVSSSDVGHDEYSTQSLVKKHKDVAEEIANYRPTLDTLHEQ-ASALPQEHAESPDVRGRLSGIEERYKEVAELTRLRKQALQDTLALYKMFSEADACELWIDEKEQWLNNMQIPEKLEDLE---VIQHRFESLEPEMNNQASRVAVVNQIARQLMHSGHPSEKEIKAQQ--DKLNTRWSQFRELVDRKKDALLSALSIQNYHLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAEKLESEHPDQAQAILSRLAEISDVWEEMKTTLKNREASLGEASKLQQFLRDLDDFQSWLSRTQTAIASEDMPNTLTEAEKLLTQHENIKNEIDNYEEDYQKMRDMG-EMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQQFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNINSDRIQEKVDSIDDRHRKNRETASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDE-ARNLHSKWLKHQAFMAELASNKEWLDKIEKEGMQLISEKPETEAVVKEKLTGLHKMWEVLESTTQTKAQRLFDANKAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEVRKKEIEELQSQAQALSQEGKSTDEVDSKRLTVQTKFME-----LLEPLNERKHNLLASKEIHQFNRDVEDEILWVGERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIVTDSSSLSAEAIRQRLADLKQLWGLLIEETEKRHRRLEEAHRAQQYYFDAAEAEAWMSEQELYMMSEEKAKDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVADSHPESERISMRQSKVDKLYAGLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYLSSREIGQSVDEVEKLIKRHEAFEK 2064 HSP 2 Score: 128.257 bits (321), Expect = 5.468e-29 Identity = 254/1265 (20.08%), Postives = 544/1265 (43.00%), Query Frame = 1
Query: 1693 ANLRETWLTDYCKLLSVDKFGEDLPAVEASVKKHEAIETDIKAYEARIQGVQKLADKLESENFHRIEWIKTTTQKINDSWAXXXXXXXXXXXXXHKHRELHQIFQEMVFIIDWM-DDVKLGLQSEDYGNHLLGVEDLLQKHVLVEADITAQEQRVQQSNRDADEFLEKAAQDDSDGYKPDVETVKTNQEDLETSYKDVCQLSQKRRQRLEESLKLHTFYRDLEEEDIWLSEKEYFVSSTEYGNDFNXXXXXXXXXXXXXXXXAAKKTLT--DKLINESEXELAAKKTLTD--KLINESETLLQEMPYASEKVNEHVSSIQTKWANVDDLSAKRKNRLEEVLRLHQYFADCREIEADLDELEAPISSTDYGHDVDSVNELFKKEKVLEDELNKIANAINDVESQRLETLGDQDRESEDVLKEKEGLDQHYR---HLKSELINHHQKLLSRLALYKLYNESDLVSEWIVGRRSQLTTYLKVERTYDMER-CKAIQLRFEGFEQELLANQDRMQVVNALASELKEKFPDEFDPATEERINKVNKSWDXXXXXXXXXXXXXVACLYIQNLYSEMTETRSWMIEKSRLLASVEDPGVDLSSVITLQRRLNTIERDIAALPSKMQDLHAQAVDLSRE------YPEEAVNIQTRYDDLQECWDSLSSMVKQKNESLAEMGELKRFIMSLDEFLNWLTQTSEQCAVEEFPQSLSEAESLLDAHFDLQKIINDHTEDYNTLMEEGPKYVRDDSNDLQTQSLRQQMQDVEDGWQQLDVLWKTRQDQLKQSMNYQLFLRDAKQCEAFLGQQELYLSRQVETPTADAVQXXXXXXXXXXXXMDTHDEKVNHVRSVADQLNEKGHYAADKVLEKAAYLTERRNTNRANADDLLSKLKDELRLKRFLEDSGEVIDWMNERMHSATDESYKEDTSNMRSKLLKHAAFEAEL-NANKIKIDALKKTGDXXXXXXXXXXXXXXXQLEQIDQLWDVLNKTSAEKKSHLSEVNRQQQFGNEVTNLDKWITEIHTQLRVKEIGSDITTARALMNKHEKTKNDIA----------EKRKRMIELCANPDEVDEEKLVAEQQIMEERFIALEEPLQERGIQLNDSKNFYEFKRDIEDAQLWIEEKEPILQSENLGDSLHEVQRMKKRHSNLRNEVDGHEPLITALERRGEEMIASNHPDSDALKRLIDALKARWQSLNTLSEDFQGKLDIGLQAKKYYFDAAEAESWMSEKELFLLGDERGKDEEHVQKLLKKHQILEKEINDYEE 5409
A+ E W+ + + L+ + E L +E + E++E ++ +R+ V ++A +L + IK K+N W+ L+D++ L + E W+ + K+ ++D GN L GV L +K +E D+ A E ++ ++A E LE D + + + E+++T+ K+ R L E+ KL F RDL++ WLS + ++S + N A+K LT + + NE + + + D +++ + +T Q M + + + ++ T W + + R+N L + Q+ D ++ EA L+ E ++ T+ ++ KK++ ++ IN V + D + S+ + ++ + +D +R SEL+ +L L K + +S WI LT + +YD R + L+ + F EL +N++ + + +L + P E + +E++ ++K W+ L+ + + + L + + W+ + S +D G DL+SV L ++ +E + ++++L +QA LS+E + + +QT++ +L E + ++ +L E+ +F +++ + W+ + + +L + L+ + LQK I H + + E V DS+ L +++RQ++ D++ W L + R +L+++ Q + DA + EA++ +QELY+ + + + +KK + + ++ + E V+ + + L H ++++ + + + + + A++ KL + RL + + ++ W+ ER A +D ++ + F + N + ++D + DELI + + + +++ W L + + L+ +F ++ + I + H +L +E+G D T L H ++DI E R+ A D +K E +++E + +L + + R ++L D+ + + F + D LW+E+ ++++ + V+ + H ++ E+D T G+ ++A H S+ +K + L + + + ED L + L+ ++ DA+ AE+W+ +E +L E G+ + V+KL+K+H+ EK ++E
Sbjct: 858 ADACELWIDEKEQWLNNMQIPEKLEDLEVIQHRFESLEPEMNNQASRVAVVNQIARQLMHSGHPSEKEIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNYHLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEA-EKLESEHPDQAQAILSRLAEISDVWEEMKTTLKN-------REASLGEASKLQQFLRDLDDFQSWLSRTQTAIASEDMPNTLTE----------------AEKLLTQHENIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMF-----LRQRLQALDTGWNELHKMWENRQNLLSQSHAYQQFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNINSDRIQEKVDSIDDRHRKNRETASELL---MRLKDNRDLQKFLQDCQELSLWI--NEKMLTAQ---DMSYDEARNLHSKWLKHQAFMAELASNKEWLDKIEKEGMQLISEKP-ETEAVVKEKLTGLHKMWEVLESTTQTKAQRLFDANKAELFTQSCADLDKWLHGLESQIQS-DDYGKDLTSVNILLKKQQMLENQMEVRKKEIEELQSQAQALSQEGKSTDEVDSKRLTVQTKFMELLEP-------LNERKHNLLASKEIHQFNRDVEDEILWVGERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIV-TDSSSLSAEAIRQRLADLKQLWGLLIEETEKRHRRLEEAHRAQQYYFDAAEAEAWMSEQELYMMSEEKAKDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVADSHPESERISMRQSKVDKLYAGLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKL-PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQK--RENEVLEA-WKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYLSSREIGQSVDEVEKLIKRHEAFEKSAATWDE 2071 HSP 3 Score: 90.1225 bits (222), Expect = 1.944e-17 Identity = 66/184 (35.87%), Postives = 90/184 (48.91%), Query Frame = 1
Query: 6976 PSESGALSVG----VDDVKMMGMLSRKPTKEAGNKKASSRVWKPFFVVLKANDLIFYLNEKEAQSRAPTGQSIP--LTGSVATIASDYHKKKNVLRLALPSGAEYLLQAESVNEMTSWIQAIGTV----KTEHDNNEESVEEIQKRLTTIGSPTRPTSSYDPNVTEEGAKKKRK---SLFGNKK 7488
P++S A +M G L+RK EA NKKASSR W + V+ ++ FY + K A S P +P L +V +A DY KKK+V +L L G EYL QA+ EM +WIQAI + K E + +S + T S TS P E+ +K ++ SLFG KK
Sbjct: 2181 PAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKTAASGIPYHSEVPVSLKEAVCEVALDYKKKKHVFKLRLNDGNEYLFQAKDDEEMNTWIQAISSAISSDKHEVSASTQSTPASSRAQTLPTSVVTITSESSPGKREKDKEKDKEKRFSLFGKKK 2364 The following BLAST results are available for this feature:
BLAST of TCONS_00014858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.