TCONS_00014857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014857
Unique NameTCONS_00014857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014857 ID=TCONS_00014857|Name=TCONS_00014857|organism=Clytia hemisphaerica|type=transcript|length=3502bp
ATTACAAACTCCATTGGAAGAGAGATAAAAAATCATGCTTCAAACATCGA
GTTGTCTGTAGTAACTATTGTTCACAATATAACGATACCATTGAATCTCG
GACAGCGTCTGCGGTTGAAAATCGTTAACAAAATTGAAATCGAGGAACCT
CTGGCCAACCGTTTTCTAGGCACCGAAGGCACTTTTTACACACACAATTT
AAAAAGCGAAAAGATTTTGAGCGTTGCTCACTTCATAGTTCAGATTGATG
GAGGAGCTAAGTCGAAACGAATTCatcaatttccaaattttggcggaaca
gtttatcaaagaaaatatcagCAAAATGAAAGATATCGAGAGCAAGCTAT
GTCAAGTGTGTCGTATATGCGGCGATCGTGCATCCGGCCGTCATTACGGT
GTCCCGTCTTGTGACGGATGTCGTGGATTTTTCAAACGTAGCGTACGTGG
AAATGCGAAGTATAAATGTAAATATTTGAGTTCGTGCGTTGTTGATATCA
AAAGACGAAATCAGTGTCAGTTTTGTCGATACCAAAGGTGTTTGTCTGTT
GGAATGAAGAAAGATGCTGTACAACACGAACGACTGGCTCATCAACGTCA
CAATTCGACTTCAAGCACATCACCGGACCATAACAACAATAACGAactcc
caaatatatttttcccGCAATTTTCCACTCCAACAGAGATGTCAATCAAA
AGTCGTCTTGCTCCACATTCTAGTTCATTTCAATCGCCATTATCTCAACT
AACAACCAATACAACACACCCAACGTTGATACCGCCCTTCAGTCCATCCT
TCAACACCCTTTTACCTTCAATCATTCCGCCTCCTCCACCCTCGACTCAA
AAAACACCCTCGCCACCCAAGAAAGACGCCCCTCATCAAGCACCGCCCTC
TCCAGTCACACCCTTATCGAAAAACTCAGAACAATATTCAATCGACAATC
TCCtaaaagacaagaaagaaaCAACGCCCCCACACGCCAATCACCACCCT
GCGATGCTGTTAACACCGCCCAGCTCTCCTCAATATCTTCTCTACCACCA
AATGAAATTCAACGTCGAACTGGAAGCAAATCTCATGAAAATCCTCGAAG
ACACAATCCGTCGTGTAAACAGTGTCCCAGCATTCGTCAAAATGAACAAA
GATATTCGTTCACAACTTTTAGAAACCTCATGGCTTCCTCTTTTACTTCT
CGGACTCTTCGAATCGAATTTCCCAGTACAATCATTCATCAGTTATCTCC
TTAATACCGTTAGTCAAAGGTTATCACCACACGAGATTCCACATCTCCAT
AATATCAGTGTTTCATTGGAAAGATTACGTCAGTGTTCAGTGGACAAAAT
TGAACTGGATTTACTGAAACTCTACGTCCTCTTTAACCCTGCTTTCGAAA
CGCAATCACTACACAAAGATGTCTCGATCAATCAAACGCAAGTTCAATGT
CTGCTCATGGAATACGAACGAAAGCAACACCCAGAATCCTTTTCGAGATC
GGCAGTTATCCTGAGTATCATTCGAAACTTTCAAGAAGTCCCGTCATCCC
TTTCGCGAGTTTTGTTCCCAAAAATCAGTGACGTCAAGAACTTTGTTAAT
CATATTTATGGCAACATTACTAGCCTGGAGAAATCAGTCTAATGACTTTG
TGGAACGGAGGCTGTggttatttgttgatatttttatactttagttttga
tttttgttgtataTAATTTGCTCGAATTAAATTCTATTATGTAAATAATT
TTCGATATATTTTAAGTTAATCaaatgtttaaaagttttcaaataatgaa
aaatatgaaaattacatattcaatttttttaagctGCATTTTATTCTTTA
GGATTCGATCAACAAATTTCAAATCGGGGCTGAAGGATGGAATCCTCAAC
GGTCGTAAGGGgctcattttcggttttttcaaaactgcatgtGTCAGATG
TCCTATAATGCACCAAACTcgaaaaaaatgggaaaattcctgaaaaatcc
gccattttgatgacgtcattgacagaaaaacttgaataagttcaggtaga
aaaaagatttcgagCTTAAATTTCGACCAGAGACGTATATAAATAAAACG
aattagaaaattggaaaacaaaatcgaaaaaatgcttacgtcagcaaaaa
tggctgaaaaaccattttttcgaaaaaaagctgacgtcatcaaaaaatca
aaagaatttcgatttaaaatgcttttaatttttaatttgaatctctggta
aaaatttgagctcgaaatcttttttctacctgaacttattcaagtttttc
tgtcaatgacgtcatcaaaatggcggatttttcaaggattttccaAAGAA
TTTCGAGTTTGGTGCATTATAGGACATCTGACAGGACACATTCATGACGG
CTAAATTAAGCTTCtccaaaaaagtccaaaaataggtatgtttatgaggt
ggaagtacatgcagttttgaaaaaaccgaaaatgagcCCCTTACGACCGT
TGAGTCATTTAGCATTTACTTGAGTCgtttcataaatttttcggatttaa
tatttcaaaaaaaatatgctaattatttttatacaattgTTTGttgatat
aaataaaaaattaccaTGACAAAACCTAAGAATTTGAGAGAGTGAAAGGG
AGTAAAAGTCTGTCCGAGAAAAACAATTCATGTAATAAAAACGAAATATA
GGATTAAAATCATctaactaaaaattgaaaaaagatttaaattttGCCGG
TTCCACCAATAGAGTTTCGAGATGTGTCCGGTATATCATTTTACAATTCG
GTATGTTTACGGCCGGAGAATTCGGGATGAGTGATGAAGCCATCTCTATC
TCGGTCTTCTTCTTCGAAAATGTTATGTAACATGGAACGTAATCCGTGAA
CTCCATCAACGTCCTTGACTCCCTTCTCGTTCTTCAAGTAGCTTCGAACC
TACAGGTGAAAGAGAAATGAGATATTGAATTTCTAAGCTGTCGAAATtct
tttatcgttttttttgtcctccttttttttatttaagtatAGTGATTCGG
TCAAAGTATTTAGCCATTTAGCCTGACAAAGCATAATTTTCAATTAGAGC
TCTCTTCgtcattctaaaaaaactccttCCACACTTTAGAGCCTAACATA
CCGCTAAAGTGGTCAGTGGATGTATACATATTCAAAAAAACATTCTGCAC
CCTGATTGAGTTCGCTTACCTCATCAGAAGACAATTGGTCATCTCCATCG
TGGTCAATGTTTAAGAAAGTGTTGTCTTTGACCGGTGCATTGGTCACGTG
TTCAAACGAAAGAACATGGATGAAGAAATAAAGTGTTGTTCTGGGTGGGA
ATTGTCCGAAAGCATTATCTCCATAAGCCCATTTTGATGGGACAGTAAGA
TGACGTACTTCTCCTTCGCACATGTCTAAAATACCTCCCTCGAAACCTGG
GATCATAGCTTTCTCTCCGATGACGAATTCAAATGGTCGTTTGTTGTATC
TA
Run BLAST on NCBI

protein sequence of TCONS_00014857-protein

>TCONS_00014857-protein ID=TCONS_00014857-protein|Name=TCONS_00014857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MEELSRNEFINFQILAEQFIKENISKMKDIESKLCQVCRICGDRASGRHY
GVPSCDGCRGFFKRSVRGNAKYKCKYLSSCVVDIKRRNQCQFCRYQRCLS
VGMKKDAVQHERLAHQRHNSTSSTSPDHNNNNELPNIFFPQFSTPTEMSI
KSRLAPHSSSFQSPLSQLTTNTTHPTLIPPFSPSFNTLLPSIIPPPPPST
QKTPSPPKKDAPHQAPPSPVTPLSKNSEQYSIDNLLKDKKETTPPHANHH
PAMLLTPPSSPQYLLYHQMKFNVELEANLMKILEDTIRRVNSVPAFVKMN
KDIRSQLLETSWLPLLLLGLFESNFPVQSFISYLLNTVSQRLSPHEIPHL
HNISVSLERLRQCSVDKIELDLLKLYVLFNPAFETQSLHKDVSINQTQVQ
CLLMEYERKQHPESFSRSAVILSIIRNFQEVPSSLSRVLFPKISDVKNFV
NHIYGNITSLEKSV
Run BLAST on NCBI

transcript from alignment at sc0000200:120923..127447+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014857 ID=TCONS_00014857|Name=TCONS_00014857|organism=Clytia hemisphaerica|type=transcript|length=6525bp|location=Sequence derived from alignment at sc0000200:120923..127447+ (Clytia hemisphaerica)
ATTACAAACTCCATTGGAAGAGAGATAAAAAATCATGCTTCAAACATCGA
GTTGTCTGTAGTAACTATTGTTCACAATATAACGATACCATTGAATCTCG
GACAGCGTCTGCGGTTGAAAATCGTTAACAAAATTGAAATCGAGGAACCT
CTGGCCAACCGTTTTCTAGGCACCGAAGGCACTTTTTACACACACAATTT
AAAAAGCGAAAAGATTTTGAGCGTTGCTCACTTCATAGTTCAGATTGATG
GAGGAGCTAAGTCGAAACGAATTCatcaatttccaaattttggcggaaca
gtttatcaaagaaaatatcagCAAAATGAAAGGTATGTCAATAAATTACA
TCTTTTCTTATTAAAAGTTCTTGCGAGGCTGTTTGATTTTTTCACGTCTT
CCTTAAAATAGCCTGAAGCTACCAATGTGTCAAAATCTCCgtcaaatttg
aaatgtttcatCACTCTCGACACGTTCTTGAAATTATCTGATTATGGTAT
TTCAAAGTTATTCTTCCCCCTTTTTTATAGATATCGAGAGCAAGCTATGT
CAAGTGTGTCGTATATGCGGCGATCGTGCATCCGGCCGTCATTACGGTGT
CCCGTCTTGTGACGGATGTCGTGGATTTTTCAAACGTAGCGTACGTGGAA
ATGCGAAGTATAAATGTAAATATTTGAGTTCGTGCGTTGTTGATATCAAA
AGACGAAATCAGTGTCAGTTTTGTCGATACCAAAGGTGTTTGTCTGTTGG
AATGAAGAAAGATGGTAAGATTCCGTTTCTTATTAATTTTCCTTTCCACT
AGTATATCTAACCTCGTCGATTTATGGTCTAATTCTACCGAGTATGCTCA
AATTAACACATACAGGGTAAATTCGATTACATTTGTCGCATTCTTTcgct
accttatcggccctttttacgctggcccttttaacgccggcccttgttac
gccacgagcccaaaaataacaccaataagggccggtgtaaaaagggccga
taaggtatttcgATTTCATTTACATCTCTAGAACTTCTTCTGTAAACAGA
CCTAGTCCATGAGCTAACGAGCTAATTTCCTGTTTGCGAAATCAGAAAGC
CAACTCTGATATAAAGTATACAAGTTCAAATTTGTGGATTTTTAGGGACT
GAGATTCGCAAGACCTTcgatttcatttttaagagATCTCGGAAgaatga
gtttttttttctttgttttcattttctttcaaaataagatAGCCTTAGTA
GGGAGCGTTTGCAGTTTCCTTGCGTTTTTAAAACATTCATATAACATTAT
TTTCACGACCAAAGTCGCGTTCAAACTAATTATTACGAAATATGAAGGGA
TTATTCCAATATAACTTTTTGATCGTTAAAACGTTAAGCATCATGtgttt
ttaacgaattttctttgtctttttttcttcttttgtaaaTTTCGGATTTT
CACGCTTTATAAGTCATCTGATGGAGTAAAAATCAAGACTTTGATCTGAT
CTGCTAGCCTTTTGAAACAGCCTTTTGAAACAGCCATTTCGCAGTTTATT
TTCTTTCACAAAAAGACAAACGCGTGTATACAGTAATCTTTTNGTCATCT
GATGGAGTCATCTGATGGAGTAAAAAACAAGACTTTGATCTGATCTGCTA
GCCTTTTGAAACAGCCTTTTGAAACAGCCATTTCGCAGTTTATTTTCTTT
CACAAAAAGACAAACGCGTGTATACAGTAATCTTTTCCTTTGATTCGGTT
TAATaagtttttttcttgattttttaatctttttcttcatttatttcTCA
TCTTTATTCGAAAGTATTTTccacaaaattcaaaaaagagcaACTTTTCA
TATCTTTTGTGATATGAAACTGTTTCTTTAGTTTGAGGTGTGGCTCGCCT
CATGCTCCGTTTTATCATCATCTATTgattgaaacaaaacaaaaaactcc
ATTATTTTCTATCGTCTTTTTTTTGCTTCcctttcactttcatttaatAA
AAAGTTGGTGTTTCGGAAAAATCAGTAACTTAAAATTTAAGTCTTTAGAG
AAATCATacccaattttttcaaaaagaaattgagcAATTGCCCGGTTAAT
GGTTAATAACGGTCACGgtctttttaaaaattcaaaaatttgccGCGGTC
AAGTTCAAGTCTATGCGCATGCGTTGTAGacaaaaaattcgaattttgcg
CCTCTCTCTGCTGCAAATACCAAATAAATTGCTTTGAAAACACAATTTCA
ATAAAGTATTTGCTCTTGTTTGCTCATAGAACAGTCATCAACAATCTATA
AGATGTTAGGTTGTTTTCAATACATACAGAAGATCAGTAAATATTTGTTC
TTCAAATTTGCTGTTGCTGAGTGCTGttttctgttgttgttttttttcat
tcattcagAGTTTGAGTctgtttttgaaacaaaaactaTGTTCTGTTCTT
TCAAACGTCAAAACTTAGAAGTAATATAATGTGGGTTCATAGATCTATTT
ACCAGAGGTCACGCATGGGCGCCGCCCAATTTTTGCAAATcataaagttt
cgcctctaaaatcgaagaaaaaaagtaaaaatttgggAATTTTTGGACCC
TTTTTTCCGAAACCTTTTCAGGGACAAAATTCGTGATTTTCCGGgacttt
tccttttttatatAAACTGAAATTATGGATCATACGGTGGCAAGATACCC
ACACCCTTTATTTGCCAGTAAACCCCTAGGATTTTGCCCGATACATATTC
ACAGGAGGCGATGTAGGAGCTAGATAAAGTTTACTAAAATTCAAGAACAA
ATCTGGCGGTtttattctgaataatttgaaaattggaGTGCATTGACCGT
TACGACCTACCCAACAGTGCTAAATACATATTgaggattgcaaaaaaaaa
tttcaaggttAACTGCTCAATTATGCTCGAAAAAAATATGCTGTATGAAA
TTTGTACATATTGCACAAACAACATAAAAGAGCAAGTGTGTTTTGCTCTC
TGAGCAgatttttttgcttcatttcaacaAATTGGTTGAATCTTTCAAAC
AgtatgttttgaatttctgGTCTTTTTGTTTTGGGGCTTAATGATGTTCG
TAGAAATAACTTTGTTTGCACTCCTTATTTGGTTAAAACAATGAGTTCCT
GCTTTTTATTGGCTATTGTAGAAAACGGCGCTATTTTCATTTGGAGCTTT
TTTTAACTTGAATGAATGAAAAGTATCCTAAAATAACTGTTTTCCGCgat
cattcattcattttggTTTGTTGGCTCCTATTTAATCAATTAATCGACTT
CTATTTTCTCTCTGCAGCTGTACAACACGAACGACTGGCTCATCAACGTC
ACAATTCGACTTCAAGCACATCACCGGACCATAACAACAATAACGAactc
ccaaatatatttttcccGCAATTTTCCACTCCAACAGAGATGTCAATCAA
AAGTCGTCTTGCTCCACATTCTAGTTCATTTCAATCGCCATTATCTCAAC
TAACAACCAATACAACACACCCAACGTTGATACCGCCCTTCAGTCCATCC
TTCAACACCCTTTTACCTTCAATCATTCCGCCTCCTCCACCCTCGACTCA
AAAAACACCCTCGCCACCCAAGAAAGACGCCCCTCATCAAGCACCGCCCT
CTCCAGTCACACCCTTATCGAAAAACTCAGAACAATATTCAATCGACAAT
CTCCtaaaagacaagaaagaaaCAACGCCCCCACACGCCAATCACCACCC
TGCGATGCTGTTAACACCGCCCAGCTCTCCTCAATATCTTCTCTACCACC
AAATGAAATTCAACGTCGAACTGGAAGCAAATCTCATGAAAATCCTCGAA
GACACAATCCGTCGTGTAAACAGTGTCCCAGCATTCGTCAAAATGAACAA
AGATATTCGTTCACAACTTTTAGAAACCTCATGGCTTCCTCTTTTACTTC
TCGGACTCTTCGAATCGAATTTCCCAGTACAATCATTCATCAGTTATCTC
CTTAATACCGTTAGTCAAAGGTTATCACCACACGAGATTCCACATCTCCA
TAATATCAGTGTTTCATTGGAAAGATTACGTCAGTGTTCAGTGGACAAAA
TTGAACTGGATTTACTGAAACTCTACGTCCTCTTTAACCCTGGTAAGTTA
CAGATCTTTTCCATTCTTGACAAAAACAACAGTTGAATATCGAATTCAGA
TTTATATGCTTCTTATATATATCTTCGTATCAACTCAGGGCCAGTGGTGT
ATGATAACTGAAATAATAATTTGCAGACCCGCAAGAAGGGAATGGAATCT
AATATGCAAAGCCCACACTAAGTTAAATCTTTAGAAGAGCCTGGTTTGGG
TTTGGATCTAATTCTCTAATTTAGACTGTATCTTTAAGTGTCACTTCTTG
TCTCATTTATCCAGCTTTCGAAACGCAATCACTACACAAAGATGTCTCGA
TCAATCAAACGCAAGTTCAATGTCTGCTCATGGAATACGAACGAAAGCAA
CACCCAGAATCCTTTTCGAGATCGGCAGTTATCCTGAGTATCATTCGAAA
CTTTCAAGAAGTCCCGTCATCCCTTTCGCGAGTTTTGTTCCCAAAAATCA
GTGACGTCAAGAACTTTGTTAATCATATTTATGGCAACATTACTAGCCTG
GAGAAATCAGTCTAATGACTTTGTGGAACGGAGGCTGTggttatttgttg
atatttttatactttagttttgatttttgttgtataTAATTTGCTCGAAT
TAAATTCTATTATGTAAATAATTTTCGATATATTTTAAGTTAATCaaatg
tttaaaagttttcaaataatgaaaaatatgaaaattacatattcaatttt
tttaagctGCATTTTATTCTTTAGGATTCGATCAACAAATTTCAAATCGG
GGCTGAAGGATGGAATCCTCAACGGTCGTAAGGGgctcattttcggtttt
ttcaaaactgcatgtGTCAGATGTCCTATAATGCACCAAACTcgaaaaaa
atgggaaaattcctgaaaaatccgccattttgatgacgtcattgacagaa
aaacttgaataagttcaggtagaaaaaagatttcgagCTTAAATTTCGAC
CAGAGACGTATATAAATAAAACGaattagaaaattggaaaacaaaatcga
aaaaatgcttacgtcagcaaaaatggctgaaaaaccattttttcgaaaaa
aagctgacgtcatcaaaaaatcaaaagaatttcgatttaaaatgctttta
atttttaatttgaatctctggtaaaaatttgagctcgaaatcttttttct
acctgaacttattcaagtttttctgtcaatgacgtcatcaaaatggcgga
tttttcaaggattttccaAAGAATTTCGAGTTTGGTGCATTATAGGACAT
CTGACAGGACACATTCATGACGGCTAAATTAAGCTTCtccaaaaaagtcc
aaaaataggtatgtttatgaggtggaagtacatgcagttttgaaaaaacc
gaaaatgagcCCCTTACGACCGTTGAGTCATTTAGCATTTACTTGAGTCg
tttcataaatttttcggatttaatatttcaaaaaaaatatgctaattatt
tttatacaattgTTTGttgatataaataaaaaattaccaTGACAAAACCT
AAGAATTTGAGAGAGTGAAAGGGAGTAAAAGTCTGTCCGAGAAAAACAAT
TCATGTAATAAAAACGAAATATAGGATTAAAATCATctaactaaaaattg
aaaaaagatttaaattttGCCGGTTCCACCAATAGAGTTTCGAGATGTGT
CCGGTATATCATTTTACAATTCGGTATGTTTACGGCCGGAGAATTCGGGA
TGAGTGATGAAGCCATCTCTATCTCGGTCTTCTTCTTCGAAAATGTTATG
TAACATGGAACGTAATCCGTGAACTCCATCAACGTCCTTGACTCCCTTCT
CGTTCTTCAAGTAGCTTCGAACCTACAGGTGAAAGAGAAATGAGATATTG
AATTTCTAAGCTGTCGAAATtcttttatcgttttttttgtcctccttttt
tttatttaagtatAGTGATTCGGTCAAAGTATTTAGCCATTTAGCCTGAC
AAAGCATAATTTTCAATTAGAGCTCTCTTCgtcattctaaaaaaactcct
tCCACACTTTAGAGCCTAACATACCGCTAAAGTGGTCAGTGGATGTATAC
ATATTCAAAAAAACATTCTGCACCCTGATTGAGTTCGCTTACCTCATCAG
AAGACAATTGGTCATCTCCATCGTGGTCAATGTTTAAGAAAGTGTTGTCT
TTGACCGGTGCATTGGTCACGTGTTCAAACGAAAGAACATGGATGAAGAA
ATAAAGTGTTGTTCTGGGTGGGAATTGTCCGAAAGCATTATCTCCATAAG
CCCATTTTGATGGGACAGTAAGATGACGTACTTCTCCTTCGCACATGTCT
AAAATACCTCCCTCGAAACCTGGGATCATAGCTTTCTCTCCGATGACGAA
TTCAAATGGTCGTTTGTTGTATCTA

Coding sequence (CDS) from alignment at sc0000200:120923..127447+

>TCONS_00014857 ID=TCONS_00014857|Name=TCONS_00014857|organism=Clytia hemisphaerica|type=CDS|length=5580bp|location=Sequence derived from alignment at sc0000200:120923..127447+ (Clytia hemisphaerica)
ATGGAGGAGCTAAGTCGAAACGAATTCatcaatttccaaattttggcgga
acagtttatcaaagaaaatatcagCAAAATGAAAGATATCGAGAGCAAGC
TATGTCAAGTGTGTCGTATATGCGGCGATCGTGCATCCGGCCGTCATTAC
GGTGTCCCGTCTTGTGACGGATGTCGTGGATTTTTCAAACGTAGCGTACG
TGGAAATGCGAAGTATAAATGTAAATATTTGAGTTCGTGCGTTGTTGATA
TCAAAAGACGAAATCAGTGTCAGTTTTGTCGATACCAAAGGTGTTTGTCT
GTTGGAATGAAGAAAGATGCTGTACAACACGAACGACTGGCTCATCAACG
TCACAATTCGACTTCAAGCACATCACCGGACCATAACAACAATAACGAac
tcccaaatatatttttcccGCAATTTTCCACTCCAACAGAGATGTCAATC
AAAAGTCGTCTTGCTCCACATTCTAGTTCATTTCAATCGCCATTATCTCA
ACTAACAACCAATACAACACACCCAACGTTGATACCGCCCTTCAGTCCAT
CCTTCAACACCCTTTTACCTTCAATCATTCCGCCTCCTCCACCCTCGACT
CAAAAAACACCCTCGCCACCCAAGAAAGACGCCCCTCATCAAGCACCGCC
CTCTCCAGTCACACCCTTATCGAAAAACTCAGAACAATATTCAATCGACA
ATCTCCtaaaagacaagaaagaaaCAACGCCCCCACACGCCAATCACCAC
CCTGCGATGCTGTTAACACCGCCCAGCTCTCCTCAATATCTTCTCTACCA
CCAAATGAAATTCAACGTCGAACTGGAAGCAAATCTCATGAAAATCCTCG
AAGACACAATCCGTCGTGTAAACAGTGTCCCAGCATTCGTCAAAATGAAC
AAAGATATTCGTTCACAACTTTTAGAAACCTCATGGCTTCCTCTTTTACT
TCTCGGACTCTTCGAATCGAATTTCCCAGTACAATCATTCATCAGTTATC
TCCTTAATACCGTTAGTCAAAGGTTATCACCACACGAGATTCCACATCTC
CATAATATCAGTGTTTCATTGGAAAGATTACGTCAGTGTTCAGTGGACAA
AATTGAACTGGATTTACTGAAACTCTACGTCCTCTTTAACCCTGCTTTCG
AAACGCAATCACTACACAAAGATGTCTCGATCAATCAAACGCAAGTTCAA
TGTCTGCTCATGGAATACGAACGAAAGCAACACCCAGAATCCTTTTCGAG
ATCGGCAGTTATCCTGAGTATCATTCGAAACTTTCAAGAAGTCCCGTCAT
CCCTTTCGCGAGTTTTGTTCCCAAAAATCAGTGACGTCAAGAACTTTGTT
AATCATATTTATGGCAACATTACTAGCCTGGAGAAATCAGTCTAAATGGA
GGAGCTAAGTCGAAACGAATTCatcaatttccaaattttggcggaacagt
ttatcaaagaaaatatcagCAAAATGAAAGATATCGAGAGCAAGCTATGT
CAAGTGTGTCGTATATGCGGCGATCGTGCATCCGGCCGTCATTACGGTGT
CCCGTCTTGTGACGGATGTCGTGGATTTTTCAAACGTAGCGTACGTGGAA
ATGCGAAGTATAAATGTAAATATTTGAGTTCGTGCGTTGTTGATATCAAA
AGACGAAATCAGTGTCAGTTTTGTCGATACCAAAGGTGTTTGTCTGTTGG
AATGAAGAAAGATGCTGTACAACACGAACGACTGGCTCATCAACGTCACA
ATTCGACTTCAAGCACATCACCGGACCATAACAACAATAACGAactccca
aatatatttttcccGCAATTTTCCACTCCAACAGAGATGTCAATCAAAAG
TCGTCTTGCTCCACATTCTAGTTCATTTCAATCGCCATTATCTCAACTAA
CAACCAATACAACACACCCAACGTTGATACCGCCCTTCAGTCCATCCTTC
AACACCCTTTTACCTTCAATCATTCCGCCTCCTCCACCCTCGACTCAAAA
AACACCCTCGCCACCCAAGAAAGACGCCCCTCATCAAGCACCGCCCTCTC
CAGTCACACCCTTATCGAAAAACTCAGAACAATATTCAATCGACAATCTC
CtaaaagacaagaaagaaaCAACGCCCCCACACGCCAATCACCACCCTGC
GATGCTGTTAACACCGCCCAGCTCTCCTCAATATCTTCTCTACCACCAAA
TGAAATTCAACGTCGAACTGGAAGCAAATCTCATGAAAATCCTCGAAGAC
ACAATCCGTCGTGTAAACAGTGTCCCAGCATTCGTCAAAATGAACAAAGA
TATTCGTTCACAACTTTTAGAAACCTCATGGCTTCCTCTTTTACTTCTCG
GACTCTTCGAATCGAATTTCCCAGTACAATCATTCATCAGTTATCTCCTT
AATACCGTTAGTCAAAGGTTATCACCACACGAGATTCCACATCTCCATAA
TATCAGTGTTTCATTGGAAAGATTACGTCAGTGTTCAGTGGACAAAATTG
AACTGGATTTACTGAAACTCTACGTCCTCTTTAACCCTGCTTTCGAAACG
CAATCACTACACAAAGATGTCTCGATCAATCAAACGCAAGTTCAATGTCT
GCTCATGGAATACGAACGAAAGCAACACCCAGAATCCTTTTCGAGATCGG
CAGTTATCCTGAGTATCATTCGAAACTTTCAAGAAGTCCCGTCATCCCTT
TCGCGAGTTTTGTTCCCAAAAATCAGTGACGTCAAGAACTTTGTTAATCA
TATTTATGGCAACATTACTAGCCTGGAGAAATCAGTCTAAATGGAGGAGC
TAAGTCGAAACGAATTCatcaatttccaaattttggcggaacagtttatc
aaagaaaatatcagCAAAATGAAAGATATCGAGAGCAAGCTATGTCAAGT
GTGTCGTATATGCGGCGATCGTGCATCCGGCCGTCATTACGGTGTCCCGT
CTTGTGACGGATGTCGTGGATTTTTCAAACGTAGCGTACGTGGAAATGCG
AAGTATAAATGTAAATATTTGAGTTCGTGCGTTGTTGATATCAAAAGACG
AAATCAGTGTCAGTTTTGTCGATACCAAAGGTGTTTGTCTGTTGGAATGA
AGAAAGATGCTGTACAACACGAACGACTGGCTCATCAACGTCACAATTCG
ACTTCAAGCACATCACCGGACCATAACAACAATAACGAactcccaaatat
atttttcccGCAATTTTCCACTCCAACAGAGATGTCAATCAAAAGTCGTC
TTGCTCCACATTCTAGTTCATTTCAATCGCCATTATCTCAACTAACAACC
AATACAACACACCCAACGTTGATACCGCCCTTCAGTCCATCCTTCAACAC
CCTTTTACCTTCAATCATTCCGCCTCCTCCACCCTCGACTCAAAAAACAC
CCTCGCCACCCAAGAAAGACGCCCCTCATCAAGCACCGCCCTCTCCAGTC
ACACCCTTATCGAAAAACTCAGAACAATATTCAATCGACAATCTCCtaaa
agacaagaaagaaaCAACGCCCCCACACGCCAATCACCACCCTGCGATGC
TGTTAACACCGCCCAGCTCTCCTCAATATCTTCTCTACCACCAAATGAAA
TTCAACGTCGAACTGGAAGCAAATCTCATGAAAATCCTCGAAGACACAAT
CCGTCGTGTAAACAGTGTCCCAGCATTCGTCAAAATGAACAAAGATATTC
GTTCACAACTTTTAGAAACCTCATGGCTTCCTCTTTTACTTCTCGGACTC
TTCGAATCGAATTTCCCAGTACAATCATTCATCAGTTATCTCCTTAATAC
CGTTAGTCAAAGGTTATCACCACACGAGATTCCACATCTCCATAATATCA
GTGTTTCATTGGAAAGATTACGTCAGTGTTCAGTGGACAAAATTGAACTG
GATTTACTGAAACTCTACGTCCTCTTTAACCCTGCTTTCGAAACGCAATC
ACTACACAAAGATGTCTCGATCAATCAAACGCAAGTTCAATGTCTGCTCA
TGGAATACGAACGAAAGCAACACCCAGAATCCTTTTCGAGATCGGCAGTT
ATCCTGAGTATCATTCGAAACTTTCAAGAAGTCCCGTCATCCCTTTCGCG
AGTTTTGTTCCCAAAAATCAGTGACGTCAAGAACTTTGTTAATCATATTT
ATGGCAACATTACTAGCCTGGAGAAATCAGTCTAAATGGAGGAGCTAAGT
CGAAACGAATTCatcaatttccaaattttggcggaacagtttatcaaaga
aaatatcagCAAAATGAAAGATATCGAGAGCAAGCTATGTCAAGTGTGTC
GTATATGCGGCGATCGTGCATCCGGCCGTCATTACGGTGTCCCGTCTTGT
GACGGATGTCGTGGATTTTTCAAACGTAGCGTACGTGGAAATGCGAAGTA
TAAATGTAAATATTTGAGTTCGTGCGTTGTTGATATCAAAAGACGAAATC
AGTGTCAGTTTTGTCGATACCAAAGGTGTTTGTCTGTTGGAATGAAGAAA
GATGCTGTACAACACGAACGACTGGCTCATCAACGTCACAATTCGACTTC
AAGCACATCACCGGACCATAACAACAATAACGAactcccaaatatatttt
tcccGCAATTTTCCACTCCAACAGAGATGTCAATCAAAAGTCGTCTTGCT
CCACATTCTAGTTCATTTCAATCGCCATTATCTCAACTAACAACCAATAC
AACACACCCAACGTTGATACCGCCCTTCAGTCCATCCTTCAACACCCTTT
TACCTTCAATCATTCCGCCTCCTCCACCCTCGACTCAAAAAACACCCTCG
CCACCCAAGAAAGACGCCCCTCATCAAGCACCGCCCTCTCCAGTCACACC
CTTATCGAAAAACTCAGAACAATATTCAATCGACAATCTCCtaaaagaca
agaaagaaaCAACGCCCCCACACGCCAATCACCACCCTGCGATGCTGTTA
ACACCGCCCAGCTCTCCTCAATATCTTCTCTACCACCAAATGAAATTCAA
CGTCGAACTGGAAGCAAATCTCATGAAAATCCTCGAAGACACAATCCGTC
GTGTAAACAGTGTCCCAGCATTCGTCAAAATGAACAAAGATATTCGTTCA
CAACTTTTAGAAACCTCATGGCTTCCTCTTTTACTTCTCGGACTCTTCGA
ATCGAATTTCCCAGTACAATCATTCATCAGTTATCTCCTTAATACCGTTA
GTCAAAGGTTATCACCACACGAGATTCCACATCTCCATAATATCAGTGTT
TCATTGGAAAGATTACGTCAGTGTTCAGTGGACAAAATTGAACTGGATTT
ACTGAAACTCTACGTCCTCTTTAACCCTGCTTTCGAAACGCAATCACTAC
ACAAAGATGTCTCGATCAATCAAACGCAAGTTCAATGTCTGCTCATGGAA
TACGAACGAAAGCAACACCCAGAATCCTTTTCGAGATCGGCAGTTATCCT
GAGTATCATTCGAAACTTTCAAGAAGTCCCGTCATCCCTTTCGCGAGTTT
TGTTCCCAAAAATCAGTGACGTCAAGAACTTTGTTAATCATATTTATGGC
AACATTACTAGCCTGGAGAAATCAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008319XLOC_008319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014857-exon-sc0000200-1491911889:120923..121254TCONS_00014857-exon-sc0000200-1491911889:120923..121254Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1510915933:120923..121254TCONS_00014857-exon-sc0000200-1510915933:120923..121254Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1575043694:120923..121254TCONS_00014857-exon-sc0000200-1575043694:120923..121254Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1491911889:121453..121686TCONS_00014857-exon-sc0000200-1491911889:121453..121686Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1510915933:121453..121686TCONS_00014857-exon-sc0000200-1510915933:121453..121686Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1575043694:121453..121686TCONS_00014857-exon-sc0000200-1575043694:121453..121686Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1491911889:124240..125064TCONS_00014857-exon-sc0000200-1491911889:124240..125064Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1510915933:124240..125064TCONS_00014857-exon-sc0000200-1510915933:124240..125064Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1575043694:124240..125064TCONS_00014857-exon-sc0000200-1575043694:124240..125064Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1491911889:125337..127447TCONS_00014857-exon-sc0000200-1491911889:125337..127447Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1510915933:125337..127447TCONS_00014857-exon-sc0000200-1510915933:125337..127447Clytia hemisphaericaexon
TCONS_00014857-exon-sc0000200-1575043694:125337..127447TCONS_00014857-exon-sc0000200-1575043694:125337..127447Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014857-proteinTCONS_00014857-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000200supercontigsc0000200:120923..127447 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0195176	0	0.0742907	1.5059	1.19326	6.66114	8.17085	2.78526	2.10122	1.39012	1.67901	2.4772	1.84892	2.64107	3.44244	5.52912	3.99578	0.0199202	0	3.20623	3.34128	0.846948	1.19468	1.41855	2.63882	1.44071	1.16589	0.149132	0.0758402
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00014857 vs. Swiss-Prot (Human)
Match: RXRA (Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.129e-28
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 2 
Query:  356 VCRICGDRASGRHYGVPSCDGCRGFFKRSVRGNAKYKCKYLSSCVVDIKRRNQCQFCRYQRCLSVGMKKDAVQHERLAHQRHN-----STSSTSPD 628
            +C ICGDR+SG+HYGV SC+GC+GFFKR+VR +  Y C+    C++D ++RN+CQ+CRYQ+CL++GMK++AVQ ER   +  N     STSS + D
Sbjct:  134 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANED 229
The following BLAST results are available for this feature:
BLAST of TCONS_00014857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RXRA1.129e-2853.13Retinoic acid receptor RXR-alpha OS=Homo sapiens G... [more]
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