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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014844 ID=TCONS_00014844|Name=TCONS_00014844|organism=Clytia hemisphaerica|type=transcript|length=2302bpRun BLAST on NCBI protein sequence of TCONS_00014844-protein >TCONS_00014844-protein ID=TCONS_00014844-protein|Name=TCONS_00014844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp MAEPVGDIALIGLAVMGQNIILNMNDHGYTVVAFNRTVSKVEEFLANEAKRun BLAST on NCBI transcript from alignment at sc0000200:29491..39549+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014844 ID=TCONS_00014844|Name=TCONS_00014844|organism=Clytia hemisphaerica|type=transcript|length=10059bp|location=Sequence derived from alignment at sc0000200:29491..39549+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000200:29491..39549+ >TCONS_00014844 ID=TCONS_00014844|Name=TCONS_00014844|organism=Clytia hemisphaerica|type=CDS|length=18915bp|location=Sequence derived from alignment at sc0000200:29491..39549+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014844 vs. Swiss-Prot (Human)
Match: 6PGD (6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3) HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0 Identity = 349/479 (72.86%), Postives = 421/479 (87.89%), Query Frame = 2
Query: 383 DIALIGLAVMGQNIILNMNDHGYTVVAFNRTVSKVEEFLANEAKGTKIVGATSMEDMIAKLKRPRRVMLLVKAGAAVDAFIDKLIPLMEKGDIIIDGGNSEYKDTNRRCRDLKSKGIHYXXXXXXXXXXXARYGPSLMPGGAPEAWPHIKPIFQAISAKSGD-EPCCDWVGDEGAGHFVKMVHNGIEYGDMQVICEAYDLMKNCLGMTPDEIGKVMEGWNKTELDSYLIEISANILQFKDEKGEPLVEKIRDTAGQKGTGKWTAINALDFGIPVTLIAESVFARCLSAIKNDRVEASKSLKGPENTKYEGDKAAFIEDIRQALYASKIVSYAQGFMLMKEAAKEFKWNLNYGSIALMWRGGCIIRSRFLGNIRDAFEKNSNLTSLLLDDFFRDAVHKCQVSWRKVVSQAILLGVPTPCFSSALAFYDGFRSERVPANLIQAQRDYFGAHTYELLENPGKFHHTNWTGTGGRVSSTTYDA 1816
DIALIGLAVMGQN+ILNMNDHG+ V AFNRTVSKV++FLANEAKGTK+VGA S+++M++KLK+PRR++LLVKAG AVD FI+KL+PL++ GDIIIDGGNSEY+DT RRCRDLK+KGI +VGSGVSGGEEGARYGPSLMPGG EAWPHIK IFQ I+AK G EPCCDWVGDEGAGHFVKMVHNGIEYGDMQ+ICEAY LMK+ LGM DE+ + E WNKTELDS+LIEI+ANIL+F+D G+ L+ KIRD+AGQKGTGKWTAI+AL++G+PVTLI E+VFARCLS++K++R++ASK LKGP+ +++GDK +F+EDIR+ALYASKI+SYAQGFML+++AA EF W LNYG IALMWRGGCIIRS FLG I+DAF++N L +LLLDDFF+ AV CQ SWR+ VS + G+P PCF++AL+FYDG+R E +PA+LIQAQRDYFGAHTYELL PG+F HTNWTG GG VSS++Y+A
Sbjct: 5 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA 483 The following BLAST results are available for this feature:
BLAST of TCONS_00014844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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