TCONS_00014840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014840
Unique NameTCONS_00014840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014840 ID=TCONS_00014840|Name=TCONS_00014840|organism=Clytia hemisphaerica|type=transcript|length=398bp
NTTTCAATACCACTTTTGGTTGAAAACGTTCAGCCATCAAAGTCATTTTG
CTCCCCTCTGCTTCACCCTCTGTATCTGTTTCTGGTATGATAGTTATAAC
GTTCTCTTTGTTACTGGATTTCTGCTTTCGATCTTGATACAACTTTGATC
TCTTTGAAGAGCCAGTTTGAGAAAACTCCAACTGTTTGTATCTGCATTTc
cttttattctcttttttcaatTCGTCGCTGAAAGACTTGGTCTCGTTTGT
TTGAAGGCTTTGAAATAgagatttttcactcaaaaactgGTTGATTCCCG
ATCGCTTCTTAAAGACGCCACTGTTCGATGTTTTCTTGAGAGACATTGCG
CTCGCGAACTACTTCACTAAACGCGAAGTGAACACTCCTCGTTCATat
Run BLAST on NCBI

protein sequence of TCONS_00014840-protein

>TCONS_00014840-protein ID=TCONS_00014840-protein|Name=TCONS_00014840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MSLKKTSNSGVFKKRSGINQFLSEKSLFQSLQTNETKSFSDELKKENKRK
CRYKQLEFSQTGSSKRSKLYQDRKQKSSNKENVITIIPETDTEGEAEGSK
MTLMAERFQPKVVLK
Run BLAST on NCBI

transcript from alignment at sc0000198:430974..431371

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014840 ID=TCONS_00014840|Name=TCONS_00014840|organism=Clytia hemisphaerica|type=transcript|length=398bp|location=Sequence derived from alignment at sc0000198:430974..431371 (Clytia hemisphaerica)
atATGAACGAGGAGTGTTCACTTCGCGTTTAGTGAAGTAGTTCGCGAGCG
CAATGTCTCTCAAGAAAACATCGAACAGTGGCGTCTTTAAGAAGCGATCG
GGAATCAACcagtttttgagtgaaaaatctcTATTTCAAAGCCTTCAAAC
AAACGAGACCAAGTCTTTCAGCGACGAattgaaaaaagagaataaaaggA
AATGCAGATACAAACAGTTGGAGTTTTCTCAAACTGGCTCTTCAAAGAGA
TCAAAGTTGTATCAAGATCGAAAGCAGAAATCCAGTAACAAAGAGAACGT
TATAACTATCATACCAGAAACAGATACAGAGGGTGAAGCAGAGGGGAGCA
AAATGACTTTGATGGCTGAACGTTTTCAACCAAAAGTGGTATTGAAAN

Coding sequence (CDS) from alignment at sc0000198:430974..431371

>TCONS_00014840 ID=TCONS_00014840|Name=TCONS_00014840|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000198:430974..431371 (Clytia hemisphaerica)
ATGTCTCTCAAGAAAACATCGAACAGTGGCGTCTTTAAGAAGCGATCGGG
AATCAACcagtttttgagtgaaaaatctcTATTTCAAAGCCTTCAAACAA
ACGAGACCAAGTCTTTCAGCGACGAattgaaaaaagagaataaaaggAAA
TGCAGATACAAACAGTTGGAGTTTTCTCAAACTGGCTCTTCAAAGAGATC
AAAGTTGTATCAAGATCGAAAGCAGAAATCCAGTAACAAAGAGAACGTTA
TAACTATCATACCAGAAACAGATACAGAGGGTGAAGCAGAGGGGAGCAAA
ATGACTTTGATGGCTGAACGTTTTCAACCAAAAGTGGTATTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008310XLOC_008310Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014840-proteinTCONS_00014840-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014840-exon-sc0000198-1491911889:430974..431371TCONS_00014840-exon-sc0000198-1491911889:430974..431371Clytia hemisphaericaexon
TCONS_00014840-exon-sc0000198-1510915933:430974..431371TCONS_00014840-exon-sc0000198-1510915933:430974..431371Clytia hemisphaericaexon
TCONS_00014840-exon-sc0000198-1575043694:430974..431371TCONS_00014840-exon-sc0000198-1575043694:430974..431371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:430974..431371 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.14239	4.47633	2.04793	0.500603	0.506283	0	0.241335	1.25353	0.453049	0	0.677963	0	0.948232	0	0.55002	0.597742	0.740415	0.392121	0	0.985171	1.17263	1.16382	1.8674	1.84401	0.478811	1.44174	4.14257	2.61935	0	0.508936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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