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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014839 ID=TCONS_00014839|Name=TCONS_00014839|organism=Clytia hemisphaerica|type=transcript|length=1074bp
GTCAGTTTCACGCTGAACGATTGTCAAGTGTAAAACTTCTTCGAAAAAAT
CtcaacaaaatgtacaaaaatttgtAATCCCTTAGGGAACATATTGATTA
ACTATTGACAATAAAAGGTAATAAAATGCTAAGAATAAccgtagtaaaat
gtaaaaatgtaaaaatgtaaaaattcaatCGTCCGGAGGGACTATTTTGT
agctattaaaataaaatttgttgcTATGGCGACATTTAGAAATTAATTCA
GTTCTTTTGTTAAGCAACTTTAAGTTTGAAGTTATTATATGATACTTTTC
CGTCAAGCATAAATTACAATTTTTGCTGCCATTCCGGTACGCTGGGGCGT
GGTCAATAATTTCCCAAGATAATGTTGGTGTTGAACCGgtttttttcaaa
ctccaaACGTGTTTAGATAGTTCAGTAGATTTTTCTTTGGATTCATTTCT
GAAATCATGGCGATGGTTGTACCAGCGATTTTTGAAAGTGCTCTCAGTGA
GACCAATATAATGAACACCTTCGTCTTCTGGGTTGGCTTTTACGTGGCAT
TTGTAAATAACGCTTTTTTGGAGGCATTTTCCGTTGAGTGGGCAATCAGT
TTTTATTCGACAATTACAAGTTTTTGTATCGATTGGTGCAGGATCTCCTA
AAACCTTTTTATTGTGAGAAGAGATTATAGACGATATGTTGGGTGAGCAA
CTGTAGCTGACTTTCAGGGTGTTTCTGTTTAGGATTTTGTGGAATTTGTG
AGCTTTTGGAAAGTTTTTCGTGACGATTTGTAAGAAACGCTTTGCGACAT
TGGTTTTTACATTGATGCTAAAAGGTGGATTAAACCAAATAATCTTTCTG
GATCTAGAGTTTATTGAGCTTTTTCGTCGTTTTTCGAATTTAATCTCTTC
GTTGTAACCGCACGATTTCAGGGCATTATTGAACTGTGGAGCagcatttt
tgaaaacattttcgtTCGAGGAGATTTTAGAGATTCTGTCAGATATCATC
TTTGGTATACCTTTTATGATGTTGGGTGGGTGGTTGGATTTTACGTTGAT
GTACATTAAGGTGTCGTTAATTAC Run BLAST on NCBI protein sequence of TCONS_00014839-protein >TCONS_00014839-protein ID=TCONS_00014839-protein|Name=TCONS_00014839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
VINDTLMYINVKSNHPPNIIKGIPKMISDRISKISSNENVFKNAAPQFNN
ALKSCGYNEEIKFEKRRKSSINSRSRKIIWFNPPFSINVKTNVAKRFLQI
VTKNFPKAHKFHKILNRNTLKVSYSCSPNISSIISSHNKKVLGDPAPIDT
KTCNCRIKTDCPLNGKCLQKSVIYKCHVKANPEDEGVHYIGLTESTFKNR
WYNHRHDFRNESKEKSTELSKHVWSLKKTGSTPTLSWEIIDHAPAYRNGS
KNCNLCLTEKYHIITSNLKLLNKRTELISKCRHSNKFYFNSYKIVPPDD Run BLAST on NCBI transcript from alignment at sc0000198:427613..428686 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014839 ID=TCONS_00014839|Name=TCONS_00014839|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at sc0000198:427613..428686 (Clytia hemisphaerica)
GTAATTAACGACACCTTAATGTACATCAACGTAAAATCCAACCACCCACC
CAACATCATAAAAGGTATACCAAAGATGATATCTGACAGAATCTCTAAAA
TCTCCTCGAacgaaaatgttttcaaaaatgctGCTCCACAGTTCAATAAT
GCCCTGAAATCGTGCGGTTACAACGAAGAGATTAAATTCGAAAAACGACG
AAAAAGCTCAATAAACTCTAGATCCAGAAAGATTATTTGGTTTAATCCAC
CTTTTAGCATCAATGTAAAAACCAATGTCGCAAAGCGTTTCTTACAAATC
GTCACGAAAAACTTTCCAAAAGCTCACAAATTCCACAAAATCCTAAACAG
AAACACCCTGAAAGTCAGCTACAGTTGCTCACCCAACATATCGTCTATAA
TCTCTTCTCACAATAAAAAGGTTTTAGGAGATCCTGCACCAATCGATACA
AAAACTTGTAATTGTCGAATAAAAACTGATTGCCCACTCAACGGAAAATG
CCTCCAAAAAAGCGTTATTTACAAATGCCACGTAAAAGCCAACCCAGAAG
ACGAAGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAATCGC
TGGTACAACCATCGCCATGATTTCAGAAATGAATCCAAAGAAAAATCTAC
TGAACTATCTAAACACGTttggagtttgaaaaaaacCGGTTCAACACCAA
CATTATCTTGGGAAATTATTGACCACGCCCCAGCGTACCGGAATGGCAGC
AAAAATTGTAATTTATGCTTGACGGAAAAGTATCATATAATAACTTCAAA
CTTAAAGTTGCTTAACAAAAGAACTGAATTAATTTCTAAATGTCGCCATA
gcaacaaattttattttaatagctACAAAATAGTCCCTCCGGACGattga
atttttacatttttacatttttacattttactacggTTATTCTTAGCATT
TTATTACCTTTTATTGTCAATAGTTAATCAATATGTTCCCTAAGGGATTa
caaatttttgtacattttgttgaGATTTTTTCGAAGAAGTTTTACACTTG
ACAATCGTTCAGCGTGAAACTGAC Coding sequence (CDS) from alignment at sc0000198:427613..428686 >TCONS_00014839 ID=TCONS_00014839|Name=TCONS_00014839|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000198:427613..428686 (Clytia hemisphaerica)
GTAATTAACGACACCTTAATGTACATCAACGTAAAATCCAACCACCCACC
CAACATCATAAAAGGTATACCAAAGATGATATCTGACAGAATCTCTAAAA
TCTCCTCGAacgaaaatgttttcaaaaatgctGCTCCACAGTTCAATAAT
GCCCTGAAATCGTGCGGTTACAACGAAGAGATTAAATTCGAAAAACGACG
AAAAAGCTCAATAAACTCTAGATCCAGAAAGATTATTTGGTTTAATCCAC
CTTTTAGCATCAATGTAAAAACCAATGTCGCAAAGCGTTTCTTACAAATC
GTCACGAAAAACTTTCCAAAAGCTCACAAATTCCACAAAATCCTAAACAG
AAACACCCTGAAAGTCAGCTACAGTTGCTCACCCAACATATCGTCTATAA
TCTCTTCTCACAATAAAAAGGTTTTAGGAGATCCTGCACCAATCGATACA
AAAACTTGTAATTGTCGAATAAAAACTGATTGCCCACTCAACGGAAAATG
CCTCCAAAAAAGCGTTATTTACAAATGCCACGTAAAAGCCAACCCAGAAG
ACGAAGGTGTTCATTATATTGGTCTCACTGAGAGCACTTTCAAAAATCGC
TGGTACAACCATCGCCATGATTTCAGAAATGAATCCAAAGAAAAATCTAC
TGAACTATCTAAACACGTttggagtttgaaaaaaacCGGTTCAACACCAA
CATTATCTTGGGAAATTATTGACCACGCCCCAGCGTACCGGAATGGCAGC
AAAAATTGTAATTTATGCTTGACGGAAAAGTATCATATAATAACTTCAAA
CTTAAAGTTGCTTAACAAAAGAACTGAATTAATTTCTAAATGTCGCCATA
gcaacaaattttattttaatagctACAAAATAGTCCCTCCGGACGattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014839-exon-sc0000198-1491911889:427613..428686 | TCONS_00014839-exon-sc0000198-1491911889:427613..428686 | Clytia hemisphaerica | exon |
| TCONS_00014839-exon-sc0000198-1510915933:427613..428686 | TCONS_00014839-exon-sc0000198-1510915933:427613..428686 | Clytia hemisphaerica | exon |
| TCONS_00014839-exon-sc0000198-1575043694:427613..428686 | TCONS_00014839-exon-sc0000198-1575043694:427613..428686 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:427613..428686 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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