TCONS_00014815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014815
Unique NameTCONS_00014815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014815 ID=TCONS_00014815|Name=TCONS_00014815|organism=Clytia hemisphaerica|type=transcript|length=2113bp
ATGACACGACAATTCgaggaagaaaaacaacaattggAATTCAAGTTtga
ttcacaaaaaaatacaatgGTTGAAATCATCAAGAGATTATTGAAGCACA
TGATGGTGTTAAAGAAACAAAGAGAAAGGTTACGAAAAAGTTACGAGGGT
GAGCTGCATGATTTGGAAGAGAGATTGGAGAGCGAGAAAGAATACTTGAT
CGAGAAAGCTGGTAACGAAAAACCCACACGTGACATCGGGCCCATATCAA
CCAATGAGAAAAGCGACACTTGGaaaccaaccaatcagaataaaGACATG
TGGAAATCTAAACCAATCATAAATCAGCAATTCAGTGTAAACAAAGGAAA
TGACGTCACACAacaaagtgaaagtgaaagtagttcAAATTGTTCGCAAA
CGTTAACATTGACAGAATTACGTGAATTGTTTTATAATATGAGCGAATTC
GAAGGAATTGTCAATTCATCTtacgaagaagaaaaagactATCTTCAGAA
GAATATGAAAGAACAGTATGAGAACAAATTGAGAATAGAAACTGACTTTT
TAATGAAACGTTTATTAGAATTATCGGATGAACTTGATAGACTTCGATTG
AATACTTGAAATGTACTTTTAGGCAGCACTGTGTGTCTGATGCATTTGTT
GGCAAATTTATAAATGTCTCTGGGATGAAGAGTAGAGAGCTATTTTCAGC
GATCGAAATACTTTAATGTTATTTCTCGAATCAAAGAGTGCTCAGAAGAT
TTTGTCCTAAAAATAGTATTAAAGTCAATAttacaaattttattgaaaat
ctagTACCAAGGATTTTACTTcttaaataaaatataatatatataaataA
TTATGTAATTGTTTATGATTGCGTCTAAAAAACTATTCGTGTTAGACTCA
ATTGAAAGCGatataaaattataaatttagaGATACATGCTAATAGTTAG
CCAGTTTAGAGATTTCGGTTTAAAATGTTAATCAAAACTGATTATAGACT
TCTATTAACTGAATTTACCCTTCAAAGTTTATTCGGTAAAATTAATTTCC
AAGCTTTTTGGAAGTGCTAGATTCTAAAGGGAGCAGGGTTTAAATAATAG
AGAgtagaattcaaaaaatgacctattcttgtaaaaaagatTCCCCTTTG
TATGTTAACGTACTCTGTAACAGAATGTTTCTCACGTATAACTTAGCGTA
GTACACGGCAACGATGCTCAAAATTCCCGTAGATATCGGATCTGTTTACA
GACAAATGTTGAGGAGATCTCACTTTTGGAAAGTCTATTCCTAGGAGACC
CTCTGGGTTTCCAAGgtccaaaaaggggGTCCCTTGGACAAAAAAAATGC
CCTCCTCAACATCCACGGTAATTCTTCTCTTATAATATGCTTCTTATGAA
TATTGAATGGAAACATCTCCCATAGCCATCACCAGAAAGGGTTCTTAAAA
TTCGACGAATAAATGAGAGACTTACCATAGTATGATTTATGCAATAACTT
TATGATTCATCAAACtatcaaaaaacatttcatatAGTCCGAGTTTTTAT
AGAAGACATGTTGTTTTTAAAAGTGCATTTTGTAAGACGACAGTCAAATG
TTTCTATTTACCttttaaaaagtgttttaaagtctcaatatatttcaaaa
cgATCATTGATGTATCTAccattttactttcaaaatatcACATCACCAAG
CATTTCTTGTCTTCGACATTTGCGtctgtttcaaaattcaaaacatattt
cCTCTCTCGCCACAAATTCATCAACCATTTTGTATATACGTCATCATTTG
TTTCATCCGATGAACTATCAGACTCTTGATGAACATATTTCAATTCACCT
TTCTTaagtttatattttttctcaatctctgtgaCTAAATCACCAAGATT
CTTACGATGTTTTTCAGTTAGTAGTACAGTTTGTTCTTCAACATGACCAC
TCCGTGTGAAACATACACGAATTAAAAATTGTGGAAtgtatatcaaaaca
aactccATATATTCCTTTTCCCCATCCTGGAGATAATCACTCACcgtttt
ctcattttcaaccTCTATCATTCCACGTTTTCGTACATAAAAATGCTGAC
TCGGCACTTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00014815-protein

>TCONS_00014815-protein ID=TCONS_00014815-protein|Name=TCONS_00014815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MTRQFEEEKQQLEFKFDSQKNTMVEIIKRLLKHMMVLKKQRERLRKSYEG
ELHDLEERLESEKEYLIEKAGNEKPTRDIGPISTNEKSDTWKPTNQNKDM
WKSKPIINQQFSVNKGNDVTQQSESESSSNCSQTLTLTELRELFYNMSEF
EGIVNSSYEEEKDYLQKNMKEQYENKLRIETDFLMKRLLELSDELDRLRL
NT
Run BLAST on NCBI

transcript from alignment at sc0000198:392041..396183-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014815 ID=TCONS_00014815|Name=TCONS_00014815|organism=Clytia hemisphaerica|type=transcript|length=4143bp|location=Sequence derived from alignment at sc0000198:392041..396183- (Clytia hemisphaerica)
ATGACACGACAATTCGAGGAAGAAAAACAACAATTGGAATTCAAGTTTGA
TTCACAAAAAAATACAATGGTTGAAATCATCAAGAGATTATTGAAGCACA
TGATGGTGTTAAAGAAACAAAGAGAAAGGTGAGAGAAAAGGATGGGTTCT
ACTTAATAGCGAGTTTTATGCATCTAACCATTTGAGTACGGAGGAATGAC
TGANGTTGATAGCGAGTTTATGCATTTAACCATTTGAGTACGGAGGAATG
ACTGAGAGGATTTGAAACAAGCTGTAGTTTTGACCCAAAAAATCTCAGCC
AGTCAGCATCTAGAAAAATTAAAAAACTATACTCCGTTGCAGAAAACACA
GCATAAATATATCGCAAAGAGGATGTAAATTAACACCATTGTTTTATTAC
TTTCTCAGTTTCAGGGCTAGGGTTTCTAAGTAGGCTAAGACTTTCGATCA
ATTTTCAGGGCTTTAGAACTTTAGCAATTGTATAAGTTTTCACCCATCAT
TTTTGTTTGTAGGTTACGAAAAAGTTACGAGGGTGAGCTGCATGATTTGG
AAGAGAGATTGGAGAGCGAGAAAGAATACTTGATCGAGAAAGCTGGTAAC
GAAAAACCCACACGTGACATCGGGCCCATATCAACCAATGAGAAAAGCGA
CACTTGGAAACCAACCAATCAGAATAAAGACATGTGGAAATCTAAACCAA
TCATAAATCAGCAATTCAGTGTAAACAAAGGAAATGACGTCACACAACAA
AGTGAAAGTGAAAGTAGTTCAAATTGTTCGCAAACGTTAACATTGACAGA
ATTACGTGAATTGTTTTATAATATGAGCGAATTCGAAGGAATTGTCAATT
CATCTTACGAAGAAGAAAAAGACTATCTTCAGAAGAATATGAAAGAACAG
TATGAGAACAAATTGAGAATAGAAACTGACTTTTTAATGAAACGTTTATT
AGAATTATCGGATGAACTTGATAGACTTCGATTGAATACTTGAAATGTAC
TTTTAGGCAGCACTGTGTGTCTGATGCATTTGTTGGCAAATTTATAAATG
TCTCTGGGATGAAGAGTAGAGAGCTATTTTCAGCGATCGAAATACTTTAA
TGTTATTTCTCGAATCAAAGAGTGCTCAGAAGATTTTGTCCTAAAAATAG
TATTAAAGTCAATATTACAAATTTTATTGAAAATCTAGTACCAAGGATTT
TACTTCTTAAATAAAATATAATATATATAAATAATTATGTAATTGTTTAT
GATTGCGTCTAAAAAACTATTCGTGTTAGACTCAATTGAAAGCGATATAA
AATTATAAATTTAGAGATACATGCTAATAGTTAGCCAGTTTAGAGATTTC
GGTTTAAAATGTTAATCAAAACTGATTATAGACTTCTATTAACTGAATTT
ACCCTTCAAAGTTTATTCGGTAAAATTAATTTCCAAGCTTTTTGGAAGTG
CTAGATTCTAAAGGGAGCAGGGTTTAAATAATAGAGAGTAGAATTCAAAA
AATGACCTATTCTTGTAAAAAAGATTCCCCTTTGTATGTTAACGTACTCT
GTAACAGAATGTTTCTCACGTATAACTTAGCGTAGTACACGGCAACGATG
CTCAAAATTCCCGTAGATATCGGATCTGTTTACAGACAAATGTTGAGGAG
ATCTCACTTTTGGAAAGTCTATTCCTAGGAGACCCTCTGGGTTTCCAAGG
TACAACAAGCAACATGCTGAATGGACCTACCTAATGATTAACATCAGATG
AAAATAAGAAAAAAGTGACAATAATTGTACAAAAATTCAGAATGGAAAAA
TAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGTAAAAAGGAATGTCCCCAAATACGAAAATCAC
TTAAACCATTCAGACCCAAAAAACCTTTTAAGCTGTTTTTGGCCCAAATT
TGCCCAAAAAGATTTTCCTTGAAAATCTGGCTCCGTCACATTTTGGGCAT
TGCCATTTTGCATCATTGTGCAAAAAATCAGAAAAAAATTATGAGTCAAC
ATGGAGAAAAGCTATATTTTCTTATTTGGTTAAAGGGAATTTCCCCAAAA
TACGAAAATCCGTCTTTTAAGGCGAATAAGAATTTCCCGGGAAAAACCAC
TTCAGTCATTCTTTAGAGAATCTTGCACCCCATCTTTGTACAAAAAATCA
GGAAAAAGTAATAACAGGATTTTGCACAAAGTCCAAAAAACCCTATTTTA
GGCAGTTTTTGGCCCAAATTTGCCCAAATATATTTTTTTCTCGAAAATCT
GGCTCCGTCACATTTTAGGCATTGCCATTTTGCATCATTGTGCAAAAAAT
CAGAAAAAAGTAATAACAGGATTTTGCACAAAGTCCAAAAAACCCTATTT
TAGGCAGTTTTTGGCCCAAATTTGCCCAAATATATTTTTTTCTCGAAAAT
CTGGCTCCGTCACATTTTAGGCATTGCCATTTTGCATCATTGTGCAAAAA
ATCAGAAAAAAATAATCAGTCAACTTTGAGAAAAGCTATATTTTCTTATT
TGGTTAAAGGGAATTTCCCCAAAATACGAAAATCCGTTTTTTAAGGCGAA
TAAGAATTTTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTAATTTTTGGCCCAAATTTGCCCAAATAAATTTTTTCTC
AAAAATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCGAACGAACAGACGAACGGACGAACGGACGAACGGACGAACGG
ACATGGGTTAATTTATAGAACCTCCACCGGGGCACCCGGAGGTAGGTCCA
AAAAGGGGGTCCCTTGGACAAAAAAAATGCCCTCCTCAACATCCACGGTA
ATTCTTCTCTTATAATATGCTTCTTATGAATATTGAATGGAAACATCTCC
CATAGCCATCACCAGAAAGGGTTCTTAAAATTCGACGAATAAATGAGAGA
CTTACCATAGTATGATTTATGCAATAACTTTATGATTCATCAAACTATCA
AAAAACATTTCATATAGTCCGAGTTTTTATAGAAGACATGTTGTTTTTAA
AAGTGCATTTTGTAAGACGACAGTCAAATGTTTCTATTTACCTTTTAAAA
AGTGTTTTAAAGTCTCAATATATTTCAAAACGATCATTGATGTATCTACC
ATTTTACTTTCAAAATATCACATCACCAAGCATTTCTTGTCTTCGACATT
TGCGTCTGTTTCAAAATTCAAAACATATTTCCTCTCTCGCCACAAATTCA
TCAACCATTTTGTATATACGTCATCATTTGTTTCATCCGATGAACTATCA
GACTCTTGATGAACATATTTCAATTCACCTTTCTTAAGTTTATATTTTTT
CTCAATCTCTGTGACTAAATCACCAAGATTCTTACGATGTTTTTCAGTTA
GTAGTACAGTTTGTTCTTCAACATGACCACTCCGTGTGAAACATACACGA
ATTAAAAATTGTGGAATGTATATCAAAACAAACTCCATATATTCCTTTTC
CCCATCCTGGAGATAATCACTCACCGTTTTCTCATTTTCAACCTCTATCA
TTCCACGTTTTCGTACATAAAAATGCTGACTCGGCACTTTGAT

Coding sequence (CDS) from alignment at sc0000198:392041..396183-

>TCONS_00014815 ID=TCONS_00014815|Name=TCONS_00014815|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0000198:392041..396183- (Clytia hemisphaerica)
GTTACGAAAAAGTTACGAGGGTGAGCTGCATGATTTGGAAGAGAGATTGG
AGAGCGAGAAAGAATACTTGATCGAGAAAGCTGGTAACGAAAAACCCACA
CGTGACATCGGGCCCATATCAACCAATGAGAAAAGCGACACTTGGAAACC
AACCAATCAGAATAAAGACATGTGGAAATCTAAACCAATCATAAATCAGC
AATTCAGTGTAAACAAAGGAAATGACGTCACACAACAAAGTGAAAGTGAA
AGTAGTTCAAATTGTTCGCAAACGTTAACATTGACAGAATTACGTGAATT
GTTTTATAATATGAGCGAATTCGAAGGAATTGTCAATTCATCTTACGAAG
AAGAAAAAGACTATCTTCAGAAGAATATGAAAGAACAGTATGAGAACAAA
TTGAGAATAGAAACTGACTTTTTAATGAAACGTTTATTAGAATTATCGGA
TGAACTTGATAGACTTCGATTGAATACTTGAATGACACGACAATTCGAGG
AAGAAAAACAACAATTGGAATTCAAGTTTGATTCACAAAAAAATACAATG
GTTGAAATCATCAAGAGATTATTGAAGCACATGATGGTGTTAAAGAAACA
AAGAGAAAGGTTACGAAAAAGTTACGAGGGTGAGCTGCATGATTTGGAAG
AGAGATTGGAGAGCGAGAAAGAATACTTGATCGAGAAAGCTGGTAACGAA
AAACCCACACGTGACATCGGGCCCATATCAACCAATGAGAAAAGCGACAC
TTGGAAACCAACCAATCAGAATAAAGACATGTGGAAATCTAAACCAATCA
TAAATCAGCAATTCAGTGTAAACAAAGGAAATGACGTCACACAACAAAGT
GAAAGTGAAAGTAGTTCAAATTGTTCGCAAACGTTAACATTGACAGAATT
ACGTGAATTGTTTTATAATATGAGCGAATTCGAAGGAATTGTCAATTCAT
CTTACGAAGAAGAAAAAGACTATCTTCAGAAGAATATGAAAGAACAGTAT
GAGAACAAATTGAGAATAGAAACTGACTTTTTAATGAAACGTTTATTAGA
ATTATCGGATGAACTTGATAGACTTCGATTGAATACTTGAATGACACGAC
AATTCGAGGAAGAAAAACAACAATTGGAATTCAAGTTTGATTCACAAAAA
AATACAATGGTTGAAATCATCAAGAGATTATTGAAGCACATGATGGTGTT
AAAGAAACAAAGAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008285XLOC_008285Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014815-proteinTCONS_00014815-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014815-exon-sc0000198-1575043694:396056..396183TCONS_00014815-exon-sc0000198-1575043694:396056..396183Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1575043694:394485..395671TCONS_00014815-exon-sc0000198-1575043694:394485..395671Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1575043694:392041..392838TCONS_00014815-exon-sc0000198-1575043694:392041..392838Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1510915933:396056..396183TCONS_00014815-exon-sc0000198-1510915933:396056..396183Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1510915933:394485..395671TCONS_00014815-exon-sc0000198-1510915933:394485..395671Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1510915933:392041..392838TCONS_00014815-exon-sc0000198-1510915933:392041..392838Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1491911889:396056..396183TCONS_00014815-exon-sc0000198-1491911889:396056..396183Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1491911889:394485..395671TCONS_00014815-exon-sc0000198-1491911889:394485..395671Clytia hemisphaericaexon
TCONS_00014815-exon-sc0000198-1491911889:392041..392838TCONS_00014815-exon-sc0000198-1491911889:392041..392838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:392041..396183 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.198804	0.197257	0.312206	0.327718	0.616865	0.438192	1.00641	1.15295	0.662273	0.464286	0.284673	0.405709	0.63644	0.824542	0.163779	0.350854	0.308199	0.256032	0.05739	0.118346	0.699577	1.00551	0.589719	0.771944	0.554295	1.24159	0.264412	0.100524	0.215441	0.186075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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