TCONS_00014804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014804
Unique NameTCONS_00014804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014804 ID=TCONS_00014804|Name=TCONS_00014804|organism=Clytia hemisphaerica|type=transcript|length=2415bp
TAAAATTCTGCATAAATAACCTTATCAATCTATTGGTCACAAAAAATGGG
TCCTCCTATTGGAGGTGGAGGTGGTGGAAATAAACCACCACCAAGTTTTT
TCCCAAACCAAAATGTGGATAACAACCGACAATATCCTCCACAAAATCAA
CAACAAACTTTTCAACAAAATGAACAATATAATTCTCAGCCTCCGTACAC
TAGTACACCTATTGCTGACCAAGCTGCCAATCACCAATATCAACCTCAGC
CTGAACAACGCTCTGTTAGAATGAGGCCACAACCTGCCAACACAAGGCCG
CAGTACCCTGGTTATGGGCCTATGGTATCTGGTTCTAGTATACAACAACC
ACAAGTTGTACCACCTCCTGGTCAAGAACAAcaagattttgatgaagaag
atggAAGACCTGGTTACGGACCAAGAGTCAATGTAAATGTCCATTACCAA
GAGGCCCAACAGCAACAGATTGGAAACGCAACTCCTGATATATTTACCTC
CTTTCTTGTTAATCGAATGGAAAATGATGGTTATGATGTTCCCCAACAGT
TAAGGAGGCGTCAAGGTGGAAACAATGAAAGAGAGATTGCCAAAGTTTTG
CAACGAATTGGTGACGATATGTCAAATCATTCTCAATTAAACAATTTGAT
TTCTGGAATTCGTGTCACACCTGATACAGTATACAAGACATTTTTCAGCG
TTGCATCAGAAATTTTCTCAGATGGCAACATTAACTGGGGTCGTATATGt
actttgttttattttgcttATAAACTTGCTATTCAAGTATTAAATGAAAT
GCCATTGGTTGATATTGTTATTGATTGGGTGAAACGATATGTATTTGATA
AATTGGTTGGCTGGATTCTTGCTAGAGGAGGATGGAAAGCTGTACACGAA
TATTTTGGTGCCACCCCGAAACAATTGGTTTTTGTCTTTCTGGCTGGTGT
TGCTATCAGTTCTATGTTTTGGTATTGGAAGAAATAAAATGAAGATGGTT
TTCTCGGAATTTATAATTATGCTGCTCTTGAGAAAAGATAGATTACTTGG
TACTGTAGTCTCAATCTTCAAGTTCGAAAAATGTTCGtgATTAATTAAta
cacaaaacaaaacaaaatatcatCACAAAAATGGGTAAATGGAAAACGAA
TGCAGATTTGGATCATGAATACAAACCTTCAGGATGTAGCCTAGCAACCG
ATACTCTACCACGAACCACCAGATCTAAACGAAAGATCGAAGTAGCTGAA
GACGAAAAACTGAGGAAACTACAGCCTGTTGTTCCTCCACCAAAGATCGA
AAGAGTAGAAGAGGATTACGGTCACACTGTATTTCCAAATGAAATTTGGG
ACAAGATTTTGATACATCTATCAAAAAAGGATTTACGGTCATTATCACTT
GTGAGTAAAAGCCTCAGGATTCTTACAAATAGATTACTATGGGCTGAACC
TAACTTTAAGCCGACCAAGCACGGGCTTAAAGGCGAAGTTTGGGAGACAT
TATTACATTTGCCAATACGTAAATTACGTTCACcggatttctttttcaaa
cgtAAAAATGACCATGAGTACATTGCTGAAATATTGAGTCAAATGCCTCT
TTTATCAGAAATTGAAGTGTGCCAGGGCAAATGGAAAAGTAACCGTATAA
CCATGAGATCTTTACGAGTTCTTGCACCTTATGTTACGAAAATCAAGCTC
GATTGTGTTCTGCCTGACAACGATTGCACACGGACTGAATTTTGTGAAGA
ACTTGCCAAAATTGATTTTCCGAATTTGNGAAAATCAAGCTCGATTGTGT
TCTGCCTGACAACGATTGCACACGGACTGAATTTTGTGAAGAACTTGCCA
AAATTGATTTTCCGAATTTGAAGAGTGTGACTATACCGTATACTGTCTTG
CCCGGGTGTTATAACACGATGCATAGTCAATGTGGTAAGGAAATGTGCGT
TCATAGAGTTTCGAGGTATAGGTTAGAAGATTTTCAACTTATGAAACACT
TACCTATTACCGAGTTGAATTTGAACTGTCTGCAACCTGAGTACGAAGTT
CTGGATAACGGTTTATGTTATTTCTATCCAGAAGAGCCATACCATTTTCC
TCAAATTCCTTATTTGTTGCAGATGAAATCTTTGAATACAGTTGTTGTGA
ATTTATTTCAAGCTGTATCTGATGATAATTTGGAAAGTTTGAGAGAATTA
CGTGACAAAAATGGTGTGAATTTGGTTCTTGTTTTTATTAGAAACGATAG
ACTTCTTGAAAAGTtgaaagtatgatttttaaatatatttcttTCAACAA
AAGACTGGTTTATATATGatattttttgtagaaaaagttTATAGTAGAAA
AATTTCTCactatatttacattttttacccATAAGACGGTGGGTTGGTCT
TTTTAGGCATGCCCC
Run BLAST on NCBI

protein sequence of TCONS_00014804-protein

>TCONS_00014804-protein ID=TCONS_00014804-protein|Name=TCONS_00014804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MGPPIGGGGGGNKPPPSFFPNQNVDNNRQYPPQNQQQTFQQNEQYNSQPP
YTSTPIADQAANHQYQPQPEQRSVRMRPQPANTRPQYPGYGPMVSGSSIQ
QPQVVPPPGQEQQDFDEEDGRPGYGPRVNVNVHYQEAQQQQIGNATPDIF
TSFLVNRMENDGYDVPQQLRRRQGGNNEREIAKVLQRIGDDMSNHSQLNN
LISGIRVTPDTVYKTFFSVASEIFSDGNINWGRICTLFYFAYKLAIQVLN
EMPLVDIVIDWVKRYVFDKLVGWILARGGWKAVHEYFGATPKQLVFVFLA
GVAISSMFWYWKK
Run BLAST on NCBI

transcript from alignment at sc0000198:133421..137954-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014804 ID=TCONS_00014804|Name=TCONS_00014804|organism=Clytia hemisphaerica|type=transcript|length=4534bp|location=Sequence derived from alignment at sc0000198:133421..137954- (Clytia hemisphaerica)
TAAAATTCTGCATAAATAACCTTATCAATCTATTGGTCACAAAAAATGGG TCCTCCTATTGGAGGTGGAGGTGGTGGAAATAAACCACCACCAAGTTTTT TCCCAAACCAAAATGTGGATAACAACCGACAATATCCTCCACAAAATCAA CAACAAACTTTTCAACAAAATGAACAATATAATTCTCAGCCTCCGTACAC TAGTACACCTATTGCTGACCAAGCTGCCAATCACCAATATCAACCTCAGC CTGAACAACGCTCTGTTAGAATGAGGCCACAACCTGCCAACACAAGGCCG CAGTACCCTGGTTATGGGCCTATGGTATCTGGTTCTAGTATACAACAACC ACAAGTTGTACCACCTCCTGGTCAAGAACAACAAGATTTTGATGAAGAAG ATGGAAGACCTGGTTACGGACCAAGAGTCAATGTAAATGTCCATTACCAA GAGGCCCAACAGCAACAGATTGGAAACGCAACTCCTGATATATTTACCTC CTTTCTTGTTAATCGAATGGAAAATGATGGTTATGATGTTCCCCAACAGT TAAGGAGGCGTCAAGGTGGAAACAATGAAAGGTATTTTAATAAAGTGATT ATTAGAAAACACAAAAAATTTATCCTTCCTTTGTAAGTTGAATAATCCTT GGAATTAAAAGAAAGATGCTTTCATTAGAGCACAAATTCTTTTTTATTGC ATTTAGGCAAAAAAGAAATGATTAATTTATTAAATGATTAGGAAATGGAC TCTAAAATTTGGTGACTGAATTCTTGAACTGCGAATAATTTCTTTTCAGA GAGATTGCCAAAGTTTTGCAACGAATTGGTGACGATATGTCAAATCATTC TCAATTAAACAATTTGATTTCTGGAATTCGTGTCACACCTGATACAGTAT ACAAGACATTTTTCAGCGTTGCATCAGAAATTTTCTCAGATGGCAACATT AACTGGGGTCGTATATGTACTTTGTTTTATTTTGCTTATAAACTTGCTAT TCAAGTATTAAATGAAATGCCATTGGTTGATATTGTTATTGATTGGGTGA AACGATATGTATTTGATAAATTGGTTGGCTGGATTCTTGCTAGAGGAGGA TGGGTAAGGTTTATGTTTTGCCATTTTTGGCCTGGTTCAAATAGTGAGAG GCACCCCCCAACCCTTACCTGAGAAAGATCACTATGCCTGCACTGGGTAA CCCCCACATGAAAAAAATGTCATCCCCAGCTGCATAGGTTTACTCCCACC TGAAATTTCTCATCAGCCTAACCCCCACCTTCTTTTAAATATCAATTTCC CATTTGAAATGAAAATTATTATAGTATTGCATAAACAAAAATTTTAAAGA ACCACATTTTTGCTCGAGATCATATATATTGAGAATTTATTGTATTTTAC GTTTATTTAAGAATTCAGAGTTAAGGCGAGGCTTTGCAAATTTTCATATT CCTTTCATCAGAATAACTTTTTCAGTTCGAAAATCCTCGCACTTTATTTA ATTCGATGAATTATATAAGTATTTTTGTTTTCTTTTTAAATTACAGAAAG CTGTACACGAATATTTTGGTGCCACCCCGAAACAATTGGTTTTTGTCTTT CTGGCTGGTGTTGCTATCAGTTCTATGTTTTGGTATTGGAAGAAATAAAA TGAAGATGGTTTTCTCGGAATTTATAATTATGCTGCTCTTGAGAAAAGAT AGATTACTTGGTACTGTAGTCTCAATCTTCAAGTTCGAAAAATGTTCGGT AAGCTCGGATACTTGTCATTAGTTCTTTGTATCAAATTCAAACTTTGTCA TACAGTTTACCTCTCTCTAATTTGATCTTCTGGGCAGTTCTAGGGACGAA CATATTTTTTCGAATTAGAAAAAAAATCAAATTAAAGAGAGGATTTTTGT AAAATTTAATTTTAAACATTTTCAGGTTCATATCAAAGATAAAGTTTTTA GCTTTGTCCTGGAAATATTCTTTTCGATCGTAAGTTTTAGGATAATGATA AATTTGTGCCTTGTTTTAGAAAACTAAATTTTTATTTCTACATTCTAGCT GACAGAAAGACATTTTTAAAGGATTTCTTGAATGTATTTTTTATGATATA ATCATGATTCTCAGAATATTTTTTTTATTTTAAAAGTTTGGAATTTTCTT CGGACTCAGGAAAAAGGTTTTTGATATAACTTTCAATTTTTTTCACTGCC ATAGTGAATACCTTAGCTTTGGTTGCTTGAATACTAAAAGCCCTCGGTGG GGGTGTGTGTGAGCCATAAAGGTCCCCCTTTTCATACCCTCGAAAGTCCC TCAAAGGGGTACAAAAACCATTAAAAAGCAAATTGAGTCTCTGTAAGGGT TCCAAAATTACGAAAATCCAAAATCAACTCCCTCAAGAGGTCATAAATTC TGGGGGAATAGTCTCTCTAAAGGTTAACAAAACGTCAAAAAATTGACAAA ACTTTTGAAATTCAGTCTTTCTAAGGGTCGATTATAAAACTTTGNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNATACATGATATTTTTGTCAATCAATTACAAGTTCCAACCCC CGTTCCATTGTAGCTTTATTTTATTTTTTATAAATTATTTTTTTCTGTGA ACATAAAAAAACTTTTACATAAAATAAGAAAAATATTGATTATTTATATC CAAGGAAATATACAAAATTATTGTTTGTTTTTACGAAATTTATTACATGT ATTATTTTTGGTCTCTTAATTTAAAACTTTTGCTGTTAGGGTTCTTTACC TGATTAGCACTGAATAAGGTTCGATTTTGATTCAACTTCCAAAAGTTTAT GTAAATTTTTAAAACACATATTTTCTTTTGAATAAAATACGAAGCTTTTC GTAAGACAAACTTACATTATCAAGTATAAAATTAAACTAAAATTGAAAAC ATCTTCATATAACACCAAATTTTGGATAATTACATTATGTAAAAGCTCTA AAGAATATATACAATAATGTCGTAAAATTAATGGCTTGTTGGTTTGTTTA GGACTCAATTAATTGATATGTTCCAAGGTATTTCAAGTCGGACAATCGCT TTTGAAATTTTCTAGGACTATAAGACATTAGGTGTCACAAATTCGCCTTT GCTTTTTGTGGGCCTTTTGTAACTCTATTTCTTTAAAAATATTTTTGTTA TTTTAGTGATTAATTAATACACAAAACAAAACAAAATATCATCACAAAAA TGGGTAAATGGAAAACGAATGCAGATTTGGATCATGAATACAAACCTTCA GGATGTAGCCTAGCAACCGATACTCTACCACGAACCACCAGATCTAAACG AAAGATCGAAGTAGCTGAAGACGAAAAACTGAGGAAACTACAGCCTGTTG TTCCTCCACCAAAGATCGAAAGAGTAGAAGAGGATTACGGTCACACTGTA TTTCCAAATGAAATTTGGGACAAGATTTTGATACATCTATCAAAAAAGGA TTTACGGTCATTATCACTTGTGAGTAAAAGCCTCAGGATTCTTACAAATA GATTACTATGGGCTGAACCTAACTTTAAGCCGACCAAGCACGGGCTTAAA GGCGAAGTTTGGGAGACATTATTACATTTGCCAATACGTAAATTACGTTC ACCGGATTTCTTTTTCAAACGTAAAAATGACCATGAGTACATTGCTGAAA TATTGAGTCAAATGCCTCTTTTATCAGAAATTGAAGTGTGCCAGGGCAAA TGGAAAAGTAACCGTATAACCATGAGATCTTTACGAGTTCTTGCACCTTA TGTTACGAAAATCAAGCTCGATTGTGTTCTGCCTGACAACGATTGCACAC GGACTGAATTTTGTGAAGAACTTGCCAAAATTGATTTTCCGAATTTGNGA AAATCAAGCTCGATTGTGTTCTGCCTGACAACGATTGCACACGGACTGAA TTTTGTGAAGAACTTGCCAAAATTGATTTTCCGAATTTGAAGAGTGTGAC TATACCGTATACTGTCTTGCCCGGGTGTTATAACACGATGCATAGTCAAT GTGGTAAGGAAATGTGCGTTCATAGAGTTTCGAGGTATAGGTTAGAAGAT TTTCAACTTATGAAACACTTACCTATTACCGAGTTGAATTTGAACTGTCT GCAACCTGAGTACGAAGTTCTGGATAACGGTTTATGTTATTTCTATCCAG AAGAGCCATACCATTTTCCTCAAATTCCTTATTTGTTGCAGATGAAATCT TTGAATACAGTTGTTGTGAATTTATTTCAAGCTGTATCTGATGATAATTT GGAAAGTTTGAGAGAATTACGTGACAAAAATGGTGTGAATTTGGTTCTTG TTTTTATTAGAAACGATAGACTTCTTGAAAAGTTGAAAGTATGATTTTTA AATATATTTCTTTCAACAAAAGACTGGTTTATATATGATATTTTTTGTAG AAAAAGTTTATAGTAGAAAAATTTCTCACTATATTTACATTTTTTACCCA TAAGACGGTGGGTTGGTCTTTTTAGGCATGCCCC

Coding sequence (CDS) from alignment at sc0000198:133421..137954-

>TCONS_00014804 ID=TCONS_00014804|Name=TCONS_00014804|organism=Clytia hemisphaerica|type=CDS|length=2826bp|location=Sequence derived from alignment at sc0000198:133421..137954- (Clytia hemisphaerica)
AAAGCTGTACACGAATATTTTGGTGCCACCCCGAAACAATTGGTTTTTGT
CTTTCTGGCTGGTGTTGCTATCAGTTCTATGTTTTGGTATTGGAAGAAAT
AAAGAGATTGCCAAAGTTTTGCAACGAATTGGTGACGATATGTCAAATCA
TTCTCAATTAAACAATTTGATTTCTGGAATTCGTGTCACACCTGATACAG
TATACAAGACATTTTTCAGCGTTGCATCAGAAATTTTCTCAGATGGCAAC
ATTAACTGGGGTCGTATATGTACTTTGTTTTATTTTGCTTATAAACTTGC
TATTCAAGTATTAAATGAAATGCCATTGGTTGATATTGTTATTGATTGGG
TGAAACGATATGTATTTGATAAATTGGTTGGCTGGATTCTTGCTAGAGGA
GGATGGATGGGTCCTCCTATTGGAGGTGGAGGTGGTGGAAATAAACCACC
ACCAAGTTTTTTCCCAAACCAAAATGTGGATAACAACCGACAATATCCTC
CACAAAATCAACAACAAACTTTTCAACAAAATGAACAATATAATTCTCAG
CCTCCGTACACTAGTACACCTATTGCTGACCAAGCTGCCAATCACCAATA
TCAACCTCAGCCTGAACAACGCTCTGTTAGAATGAGGCCACAACCTGCCA
ACACAAGGCCGCAGTACCCTGGTTATGGGCCTATGGTATCTGGTTCTAGT
ATACAACAACCACAAGTTGTACCACCTCCTGGTCAAGAACAACAAGATTT
TGATGAAGAAGATGGAAGACCTGGTTACGGACCAAGAGTCAATGTAAATG
TCCATTACCAAGAGGCCCAACAGCAACAGATTGGAAACGCAACTCCTGAT
ATATTTACCTCCTTTCTTGTTAATCGAATGGAAAATGATGGTTATGATGT
TCCCCAACAGTTAAGGAGGCGTCAAGGTGGAAACAATGAAAGAAAGCTGT
ACACGAATATTTTGGTGCCACCCCGAAACAATTGGTTTTTGTCTTTCTGG
CTGGTGTTGCTATCAGTTCTATGTTTTGGTATTGGAAGAAATAAAGAGAT
TGCCAAAGTTTTGCAACGAATTGGTGACGATATGTCAAATCATTCTCAAT
TAAACAATTTGATTTCTGGAATTCGTGTCACACCTGATACAGTATACAAG
ACATTTTTCAGCGTTGCATCAGAAATTTTCTCAGATGGCAACATTAACTG
GGGTCGTATATGTACTTTGTTTTATTTTGCTTATAAACTTGCTATTCAAG
TATTAAATGAAATGCCATTGGTTGATATTGTTATTGATTGGGTGAAACGA
TATGTATTTGATAAATTGGTTGGCTGGATTCTTGCTAGAGGAGGATGGAT
GGGTCCTCCTATTGGAGGTGGAGGTGGTGGAAATAAACCACCACCAAGTT
TTTTCCCAAACCAAAATGTGGATAACAACCGACAATATCCTCCACAAAAT
CAACAACAAACTTTTCAACAAAATGAACAATATAATTCTCAGCCTCCGTA
CACTAGTACACCTATTGCTGACCAAGCTGCCAATCACCAATATCAACCTC
AGCCTGAACAACGCTCTGTTAGAATGAGGCCACAACCTGCCAACACAAGG
CCGCAGTACCCTGGTTATGGGCCTATGGTATCTGGTTCTAGTATACAACA
ACCACAAGTTGTACCACCTCCTGGTCAAGAACAACAAGATTTTGATGAAG
AAGATGGAAGACCTGGTTACGGACCAAGAGTCAATGTAAATGTCCATTAC
CAAGAGGCCCAACAGCAACAGATTGGAAACGCAACTCCTGATATATTTAC
CTCCTTTCTTGTTAATCGAATGGAAAATGATGGTTATGATGTTCCCCAAC
AGTTAAGGAGGCGTCAAGGTGGAAACAATGAAAGAAAGCTGTACACGAAT
ATTTTGGTGCCACCCCGAAACAATTGGTTTTTGTCTTTCTGGCTGGTGTT
GCTATCAGTTCTATGTTTTGGTATTGGAAGAAATAAAGAGATTGCCAAAG
TTTTGCAACGAATTGGTGACGATATGTCAAATCATTCTCAATTAAACAAT
TTGATTTCTGGAATTCGTGTCACACCTGATACAGTATACAAGACATTTTT
CAGCGTTGCATCAGAAATTTTCTCAGATGGCAACATTAACTGGGGTCGTA
TATGTACTTTGTTTTATTTTGCTTATAAACTTGCTATTCAAGTATTAAAT
GAAATGCCATTGGTTGATATTGTTATTGATTGGGTGAAACGATATGTATT
TGATAAATTGGTTGGCTGGATTCTTGCTAGAGGAGGATGGATGGGTCCTC
CTATTGGAGGTGGAGGTGGTGGAAATAAACCACCACCAAGTTTTTTCCCA
AACCAAAATGTGGATAACAACCGACAATATCCTCCACAAAATCAACAACA
AACTTTTCAACAAAATGAACAATATAATTCTCAGCCTCCGTACACTAGTA
CACCTATTGCTGACCAAGCTGCCAATCACCAATATCAACCTCAGCCTGAA
CAACGCTCTGTTAGAATGAGGCCACAACCTGCCAACACAAGGCCGCAGTA
CCCTGGTTATGGGCCTATGGTATCTGGTTCTAGTATACAACAACCACAAG
TTGTACCACCTCCTGGTCAAGAACAACAAGATTTTGATGAAGAAGATGGA
AGACCTGGTTACGGACCAAGAGTCAATGTAAATGTCCATTACCAAGAGGC
CCAACAGCAACAGATTGGAAACGCAACTCCTGATATATTTACCTCCTTTC
TTGTTAATCGAATGGAAAATGATGGTTATGATGTTCCCCAACAGTTAAGG
AGGCGTCAAGGTGGAAACAATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008281XLOC_008281Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014804-proteinTCONS_00014804-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014804-exon-sc0000198-1575043694:137374..137954TCONS_00014804-exon-sc0000198-1575043694:137374..137954Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1575043694:136852..137155TCONS_00014804-exon-sc0000198-1575043694:136852..137155Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1575043694:136207..136408TCONS_00014804-exon-sc0000198-1575043694:136207..136408Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1575043694:133421..134748TCONS_00014804-exon-sc0000198-1575043694:133421..134748Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1510915933:137374..137954TCONS_00014804-exon-sc0000198-1510915933:137374..137954Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1510915933:136852..137155TCONS_00014804-exon-sc0000198-1510915933:136852..137155Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1510915933:136207..136408TCONS_00014804-exon-sc0000198-1510915933:136207..136408Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1510915933:133421..134748TCONS_00014804-exon-sc0000198-1510915933:133421..134748Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1491911889:137374..137954TCONS_00014804-exon-sc0000198-1491911889:137374..137954Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1491911889:136852..137155TCONS_00014804-exon-sc0000198-1491911889:136852..137155Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1491911889:136207..136408TCONS_00014804-exon-sc0000198-1491911889:136207..136408Clytia hemisphaericaexon
TCONS_00014804-exon-sc0000198-1491911889:133421..134748TCONS_00014804-exon-sc0000198-1491911889:133421..134748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:133421..137954 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9376 11.509 5.65568 6.4904 8.65617 7.64399 6.44933 6.13302 4.84032 5.18362 5.76635 4.47237 3.97871 4.53975 3.43916 6.38837 7.34862 6.17592 2.30042 2.46122 3.05528 3.03399 19.9786 18.3336 9.87122 12.3236 7.95865 6.96126 13.7234 15.6122
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026298Blc2_fam
IPR002475Bcl2-like
Vocabulary: Biological Process
TermDefinition
GO:0042981regulation of apoptotic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
Blast
BLAST of TCONS_00014804 vs. Swiss-Prot (Human)
Match: BAX (Apoptosis regulator BAX OS=Homo sapiens GN=BAX PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.167e-26
Identity = 60/177 (33.90%), Postives = 104/177 (58.76%), Query Frame = 1
Query:  463 QQIGNATPDIFTSFLVNRMENDGYDVPQ-QLRRRQGGNNEREIAKVLQRIGDDMSNHSQLNNLISGIRVTPDTVYKTFFSVASEIFSDGNINWGRICTLFYFAYKLAIQVL-NEMP-LVDIVIDWVKRYVFDKLVGWILARGGWKAVHEYFGATPKQLVFVFLAGVAISSMFWYWKK 984
            +QI      +   F+ +R    G + P+  L       + +++++ L+RIGD++ ++ +L  +I+   V  D+  + FF VA+++FSDGN NWGR+  LFYFA KL ++ L  ++P L+  ++ W   ++ ++L+GWI  +GGW  +  YFG    Q V +F+AGV  +S+   WKK
Sbjct:   17 EQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLSECLKRIGDELDSNMELQRMIAA--VDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFVAGVLTASLT-IWKK 190          
The following BLAST results are available for this feature:
BLAST of TCONS_00014804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BAX1.167e-2633.90Apoptosis regulator BAX OS=Homo sapiens GN=BAX PE=... [more]
back to top