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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014801 ID=TCONS_00014801|Name=TCONS_00014801|organism=Clytia hemisphaerica|type=transcript|length=2375bpRun BLAST on NCBI protein sequence of TCONS_00014801-protein >TCONS_00014801-protein ID=TCONS_00014801-protein|Name=TCONS_00014801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=713bp MDPQHISNLFLNTLEPSPETRGQAEAQLTEISTTPGFLPVALQLIVSEQIRun BLAST on NCBI transcript from alignment at sc0000198:69630..87816- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014801 ID=TCONS_00014801|Name=TCONS_00014801|organism=Clytia hemisphaerica|type=transcript|length=18187bp|location=Sequence derived from alignment at sc0000198:69630..87816- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000198:69630..87816- >TCONS_00014801 ID=TCONS_00014801|Name=TCONS_00014801|organism=Clytia hemisphaerica|type=CDS|length=38556bp|location=Sequence derived from alignment at sc0000198:69630..87816- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014801 vs. Swiss-Prot (Human)
Match: IPO7 (Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1) HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0 Identity = 316/701 (45.08%), Postives = 461/701 (65.76%), Query Frame = 1
Query: 172 MDPQHISNLFLNTLEPSPETRGQAEAQLTEISTTPGFLPVALQLIVSEQIPVAVRQAAVIYFKNMVCKYW--REYDPEIAGIEKKYQIPVEDKSFVRDKIVEAVLTATELVRVQLTVAIHDMISCDFPEKWPDLVNRINGYLTSDVKETWLGALLVLYQLVKKYEFKTKEDRGTIEEIMNVFLPILHSRCASWVKDDSLESYLLITKVFKIFRALIQLHLPLNIINQNNFPQWMGLFKTVLEKPVPEASLQYDEDDRSQLSWWKAKKWAITVLHKVFERYGCPGSEEKEFSKFADFYDKNYSEQVTGLMLKILDAHRKQTYIAPRVLQQCLSYLNQGVYNARSWKLVKPHFQEIFKDILFPLMCHSEEDEALWLDDPQEYIRIKYDIFEEYMFFSPSATAKSYLKEAAQKRKNVLTDIIAYINEILNLDASQRNPKHKDGALHVLGSLAELLSKKKAYKGHIEQLLAQHVAPEFHSPLGFLRARACWVVQQFAIISFKDDNTLALLFNSVLQGLT-DKDLPVQVEAGIALRQLMSEQEEAAESLVRPHVKGLVQQILHILKESENDELTNTISKLVQNFPEEVTQISLELVHTLTETFNNLVES---DEDYDSKSVTAMGILETIENIVGELDGAPEIMIQIEQIVVGLIQSVLKKELMEYYEEVFALINECTTVQVSPVMWNVLFLLMETFHNDTADYFT 2256
MDP I T++P+ R AE QL E + F+ LQ+ +SEQ+ + VRQA VIY KNM+ +YW RE P G Y IP ED+ +R+ IVEA++ + EL+RVQLT IH +I D+P +W +V++I YL SD WLG LL LYQLVK YE+K E+R + M FLP+L R + D S +S L+ ++FKIF AL+Q LPL +INQ N +W+ + KTV+ + VP +LQ +EDDR +L WWK KKWA+ +L ++FERYG PG+ KE+++FA+ + K ++ V ++LK+L ++++ Y+APRVLQQ L+Y+NQGV +A +WK +KPH Q I +D++FPLMC+++ DE LW +DP EYIR+K+D+FE+ F SP+ A++ L A KRK VL + + +IL +P+ KDGALH++GSLAE+L KKK YK +E +L HV P F S LG++RARACWV+ F + FK D L + L D+++PV+VEA IAL+ L+S QE+A E + P ++ ++Q +LHI++E+END+LTN I K++ + EEVT I++E+ L TFN ++++ +E D K+VTAMGIL TI+ ++ ++ EI Q+E I + +I +VL++ ++E+YEE+F+L + T QVSP MW +L L+ E F D DYFT
Sbjct: 1 MDPNTIIEALRGTMDPA--LREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKNMITQYWPDRETAP---GDISPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYKKPEERSPLVAAMQHFLPVLKDRFIQLLSDQSDQSVLIQKQIFKIFYALVQYTLPLELINQQNLTEWIEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFED--FISPTTAAQTLLFTACSKRKEVLQKTMGFCYQILT--EPNADPRKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKE-YITPFIRPVMQALLHIIRETENDDLTNVIQKMICEYSEEVTPIAVEMTQHLAMTFNQVIQTGPDEEGSDDKAVTAMGILNTIDTLLSVVEDHKEITQQLEGICLQVIGTVLQQHVLEFYEEIFSLAHSLTCQQVSPQMWQLLPLVFEVFQQDGFDYFT 691 The following BLAST results are available for this feature:
BLAST of TCONS_00014801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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