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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014774 ID=TCONS_00014774|Name=TCONS_00014774|organism=Clytia hemisphaerica|type=transcript|length=676bp
TTCGAAAGATCTTTTTAACCTCGAGTATAGGTACTTAGAGCTCACATTTC
AGAAggtttaaaaatgaagaagttttcaacttttttcttgatcaaTATTC
TGGTCGTGTACAAGACAGTAAACGCAGCAGAGGATTGTGAAGATTGGTCC
GAATGGAGTACATGTACAAAGAAATGTGATGGTAAAGATACAAAAAGCAG
GACCAGAACATGCGTAGACGAAGAGACAGGTTTTATCCATGACGTTACAC
AACGAGCAAGATGTTTCGATCCAATCTGTATTGAATGGGGTGATTGGTCT
GAATGGGCGTCTTGTAACACtaacagaaaaataatttgtaaactCAAAGG
GTCGGATAAAGCTGCTCGTGGATGCACTGGTAAGAGCATTGAAGTCAAAG
AGTGCAATGATTGTACCCCTGTATGGACAAAATGGTCTTCATGGTCAAGC
TGTTCAGCATCGTGTGGGGACCGATCGAGTAGATTTAGAAAACgtatttg
tgttttgaaataCACGAAATATCCAAGCCATAAATGTAAaggagaaagtt
ttgaatctaaaGATTGCAAAGTTCCAGCATGTCCATCTTGGGGTTTGTGG
GGGAAATGGGGATCGTGTTCAAAAACGTGCGGTCGTGATTCAATCCAAAG
TCGATCACGAAACTGTCTTTTCAAAG Run BLAST on NCBI protein sequence of TCONS_00014774-protein >TCONS_00014774-protein ID=TCONS_00014774-protein|Name=TCONS_00014774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MKKFSTFFLINILVVYKTVNAAEDCEDWSEWSTCTKKCDGKDTKSRTRTC
VDEETGFIHDVTQRARCFDPICIEWGDWSEWASCNTNRKIICKLKGSDKA
ARGCTGKSIEVKECNDCTPVWTKWSSWSSCSASCGDRSSRFRKRICVLKY
TKYPSHKCKGESFESKDCKVPACPSWGLWGKWGSCSKTCGRDSIQSRSRN
CLFK Run BLAST on NCBI transcript from alignment at sc0000198:243118..244792+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014774 ID=TCONS_00014774|Name=TCONS_00014774|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at sc0000198:243118..244792+ (Clytia hemisphaerica)
TTCGAAAGATCTTTTTAACCTCGAGTATAGGTACTTAGAGCTCACATTTC
AGAAggtttaaaaatgaagaagttttcaacttttttcttgatcaaTATTC
TGGTCGTGTACAAGACAGGTAAGAAAACTTTAACTAAGTAGAATATTCCG
TTCCTTGTTTTTTTAAACCATGTTCAGGTATGATAAAAATGGATAGTAAA
AACGTTTAGGTAAGGGCAAATCTTGTCTTTTTCTCTGAGATAATAAATTT
GAAATGGCAGGACCCCCCTTAATAGTTTACCTTAATATACTGTCTGACTA
GTTTGACAATAGATTCTGAAGCTTTATTTTCTCAATCATTTCAATCTGAT
TCAATTCACCTATCACCTTTAAAGGCataaaaaatcgcaaaaatctGTCC
AGTTTACCATAAATGTCTGTACTTTCTAAGAAAATCAATGCAAAAACTTc
atacaattcatgatattcatgacgtaatgttttctacggaaacaaCCCGG
TTTTAACCAGTAGTTGTAAATTTAAActagttgtataaaatttgccacta
ctggtaaaaaccggggtatttccgtagaaaacattacgtcatgaatatca
tgaattgattttttcttctGGTAAACTCTAGCCCAGTCAGGtttcatttt
tacataagtggtgttcccgtttcatatcaggcacatatttcatatcagga
cagtgtctgcctatcgttatattatgctgatataagcaaaaaatgttttt
tcttttcctttttctgaccaatcttgctccacatccgcgtcaatccaatg
tgaaaagcttgtgaattaaaagtgatgagtaagcaaacggtatcactctt
atttaaaaataaaacctttaagtgtTGATAAGTTATTTCTTGATCGTAGT
AAACGCAGCAGAGGATTGTGAAGATTGGTCCGAATGGAGTACATGTACAA
AGAAATGTGATGGTAAAGATACAAAAAGCAGGACCAGAACATGCGTAGAC
GAAGAGACAGGTTTTATCCATGACGTTACACAACGAGCAAGATGTTTCGA
TCCAATCTGTATTGAATGGGGTGATTGGTCTGAATGGGCGTCTTGTAACA
CtaacagaaaaataatttgtaaactCAAAGGTTTGTACACAAAGAGCAAG
CCTTTAACGGAATTCCGCTGTAAATTTAGCTCAGTTTTTTAAGAGAGGGT
GTTGGTGACAACGGTTACTGTAtcattagaaatagaaatattatTTCTGC
ATTTCGAAACTCAAGCTCAATTTGAAACTACTTCTGAAATCAAAAAGTCG
ATATATCGATATACATTAGCTGTATTTTAATTGTTCTAATGATTTTAGGG
TCGGATAAAGCTGCTCGTGGATGCACTGGTAAGAGCATTGAAGTCAAAGA
GTGCAATGATTGTACCCCTGTATGGACAAAATGGTCTTCATGGTCAAGCT
GTTCAGCATCGTGTGGGGACCGATCGAGTAGATTTAGAAAACgtatttgt
gttttgaaataCACGAAATATCCAAGCCATAAATGTAAaggagaaagttt
tgaatctaaaGATTGCAAAGTTCCAGCATGTCCATCTTGGGGTTTGTGGG
GGAAATGGGGATCGTGTTCAAAAACGTGCGGTCGTGATTCAATCCAAAGT
CGATCACGAAACTGTCTTTTCAAAG Coding sequence (CDS) from alignment at sc0000198:243118..244792+ >TCONS_00014774 ID=TCONS_00014774|Name=TCONS_00014774|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000198:243118..244792+ (Clytia hemisphaerica)
atgaagaagttttcaacttttttcttgatcaaTATTCTGGTCGTGTACAA
GACAGTAAACGCAGCAGAGGATTGTGAAGATTGGTCCGAATGGAGTACAT
GTACAAAGAAATGTGATGGTAAAGATACAAAAAGCAGGACCAGAACATGC
GTAGACGAAGAGACAGGTTTTATCCATGACGTTACACAACGAGCAAGATG
TTTCGATCCAATCTGTATTGAATGGGGTGATTGGTCTGAATGGGCGTCTT
GTAACACtaacagaaaaataatttgtaaactCAAAGGGTCGGATAAAGCT
GCTCGTGGATGCACTGGTAAGAGCATTGAAGTCAAAGAGTGCAATGATTG
TACCCCTGTATGGACAAAATGGTCTTCATGGTCAAGCTGTTCAGCATCGT
GTGGGGACCGATCGAGTAGATTTAGAAAACgtatttgtgttttgaaataC
ACGAAATATCCAAGCCATAAATGTAAaggagaaagttttgaatctaaaGA
TTGCAAAGTTCCAGCATGTCCATCTTGGGGTTTGTGGGGGAAATGGGGAT
CGTGTTCAAAAACGTGCGGTCGTGATTCAATCCAAAGTCGATCACGAAAC
TGTCTTTTCAAAatgaagaagttttcaacttttttcttgatcaaTATTCT
GGTCGTGTACAAGACAGTAAACGCAGCAGAGGATTGTGAAGATTGGTCCG
AATGGAGTACATGTACAAAGAAATGTGATGGTAAAGATACAAAAAGCAGG
ACCAGAACATGCGTAGACGAAGAGACAGGTTTTATCCATGACGTTACACA
ACGAGCAAGATGTTTCGATCCAATCTGTATTGAATGGGGTGATTGGTCTG
AATGGGCGTCTTGTAACACtaacagaaaaataatttgtaaactCAAAGGG
TCGGATAAAGCTGCTCGTGGATGCACTGGTAAGAGCATTGAAGTCAAAGA
GTGCAATGATTGTACCCCTGTATGGACAAAATGGTCTTCATGGTCAAGCT
GTTCAGCATCGTGTGGGGACCGATCGAGTAGATTTAGAAAACgtatttgt
gttttgaaataCACGAAATATCCAAGCCATAAATGTAAaggagaaagttt
tgaatctaaaGATTGCAAAGTTCCAGCATGTCCATCTTGGGGTTTGTGGG
GGAAATGGGGATCGTGTTCAAAAACGTGCGGTCGTGATTCAATCCAAAGT
CGATCACGAAACTGTCTTTTCAAAatgaagaagttttcaacttttttctt
gatcaaTATTCTGGTCGTGTACAAGACAGTAAACGCAGCAGAGGATTGTG
AAGATTGGTCCGAATGGAGTACATGTACAAAGAAATGTGATGGTAAAGAT
ACAAAAAGCAGGACCAGAACATGCGTAGACGAAGAGACAGGTTTTATCCA
TGACGTTACACAACGAGCAAGATGTTTCGATCCAATCTGTATTGAATGGG
GTGATTGGTCTGAATGGGCGTCTTGTAACACtaacagaaaaataatttgt
aaactCAAAGGGTCGGATAAAGCTGCTCGTGGATGCACTGGTAAGAGCAT
TGAAGTCAAAGAGTGCAATGATTGTACCCCTGTATGGACAAAATGGTCTT
CATGGTCAAGCTGTTCAGCATCGTGTGGGGACCGATCGAGTAGATTTAGA
AAACgtatttgtgttttgaaataCACGAAATATCCAAGCCATAAATGTAA
aggagaaagttttgaatctaaaGATTGCAAAGTTCCAGCATGTCCATCTT
GGGGTTTGTGGGGGAAATGGGGATCGTGTTCAAAAACGTGCGGTCGTGAT
TCAATCCAAAGTCGATCACGAAACTGTCTTTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014774-exon-sc0000198-1491911889:243118..243235 | TCONS_00014774-exon-sc0000198-1491911889:243118..243235 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1510915933:243118..243235 | TCONS_00014774-exon-sc0000198-1510915933:243118..243235 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1575043694:243118..243235 | TCONS_00014774-exon-sc0000198-1575043694:243118..243235 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1491911889:244017..244247 | TCONS_00014774-exon-sc0000198-1491911889:244017..244247 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1510915933:244017..244247 | TCONS_00014774-exon-sc0000198-1510915933:244017..244247 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1575043694:244017..244247 | TCONS_00014774-exon-sc0000198-1575043694:244017..244247 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1491911889:244466..244792 | TCONS_00014774-exon-sc0000198-1491911889:244466..244792 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1510915933:244466..244792 | TCONS_00014774-exon-sc0000198-1510915933:244466..244792 | Clytia hemisphaerica | exon |
| TCONS_00014774-exon-sc0000198-1575043694:244466..244792 | TCONS_00014774-exon-sc0000198-1575043694:244466..244792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000198 | supercontig | sc0000198:243118..244792 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000884 | TSP1_rpt |
Blast
The following BLAST results are available for this feature:
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