TCONS_00014702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014702
Unique NameTCONS_00014702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014702 ID=TCONS_00014702|Name=TCONS_00014702|organism=Clytia hemisphaerica|type=transcript|length=259bp
CTTGGTTTGAACCATGGTCCATTTTCTGGCTGTTCCTGATAGTTTATACC
TAAATGGTACAGACTTTTAAGAGATTTAATATATTTAGCTCAGCTTTTCT
ACTTAAAAGATGAAATAGAATGTCGGCTTCAAAAGGTGGTAAACTAATCA
GAAATTTAGTCTACACTGGGCTTAATCAGCTGGCCTACCAGCCTACTGTA
GTTCAAAAGATACTCATTACCACGAGTTGATCTAATCCTTCAtgtaattc
tgacaccct
Run BLAST on NCBI

transcript from alignment at sc0000197:352133..352473+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014702 ID=TCONS_00014702|Name=TCONS_00014702|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0000197:352133..352473+ (Clytia hemisphaerica)
CTTGGTTTGAACCATGGTCCATTTTCTGGCTGTTCCTGATAGTTTATACC
TAAATGGTACAGACTTTTAAGAGATTTAATATATTTAGCTCAGCTTTTCT
ACTTAAAAGATGAAATAGAATGTCGGCTTCAAAAGGTGGTAAAATACTTA
TGGTAATAGTTTCCCATTTTTCTAGGACAGGCTGATAAATTCTGTCTTAT
CTGACAAGTAAATTACAGAGACAACCTAATCAGAAATTTAGTCTACACTG
GGCTTAATCAGCTGGCCTACCAGCCTACTGTAGTTCAAAAGATACTCATT
ACCACGAGTTGATCTAATCCTTCAtgtaattctgacaccct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008228XLOC_008228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014702-exon-sc0000197-1491911889:352133..352275TCONS_00014702-exon-sc0000197-1491911889:352133..352275Clytia hemisphaericaexon
TCONS_00014702-exon-sc0000197-1510915933:352133..352275TCONS_00014702-exon-sc0000197-1510915933:352133..352275Clytia hemisphaericaexon
TCONS_00014702-exon-sc0000197-1575043694:352133..352275TCONS_00014702-exon-sc0000197-1575043694:352133..352275Clytia hemisphaericaexon
TCONS_00014702-exon-sc0000197-1491911889:352358..352473TCONS_00014702-exon-sc0000197-1491911889:352358..352473Clytia hemisphaericaexon
TCONS_00014702-exon-sc0000197-1510915933:352358..352473TCONS_00014702-exon-sc0000197-1510915933:352358..352473Clytia hemisphaericaexon
TCONS_00014702-exon-sc0000197-1575043694:352358..352473TCONS_00014702-exon-sc0000197-1575043694:352358..352473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:352133..352473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.666532	0	1.50936	2.21502	2.69657	0.710288	0.856933	0.80225	0.561674	0.695724	0.675287	3.99516	2.21645	0	1.51392	1.2185	0	2.56428	2.12562	2.96574	3.86665	3.77203	0.764233	2.77919	1.43125	1.91604	3.65579	3.90156	2.2194	2.26121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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