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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014671 ID=TCONS_00014671|Name=TCONS_00014671|organism=Clytia hemisphaerica|type=transcript|length=2001bp
AGGTGAAAGAAATTTGAGAGCAGATTGAAACGACACAACCACTCTCGTCA
TGACCATGAAGATTGTAAGAGGGAATGGAAAAGAAATCACTTCGTATATA
CGAgacaataaaagtgaaatcataGACGCCTTTGAGACACCCGGCGCCCT
TCTCCTCCGTGAATTCGACACAAATCAGATTGAAATTGATGAAGTTGCCC
GATTAATAGGATATACACCAGCGCACACTTATATTCCAGGAATCGCTCCA
AGGAAAGCTGCTATAGAAGGAAATCCGTTCGTATTTACTTCGACAGAAGC
ACCGCCCCATCTCCCTATCCTTCCTCATACTGAAATGACTTATTGGCCGG
ACCCTCCCCATCTTATACTGTTTCAGTGCAAATTTCTTGATAGTTCATGT
CCTCAAGTCAATGCAAATGAAACTGTGCTATTTGACATGAAACTAGCTGC
TGCTGAGCTAaacgaaaatctgcttgagaAGTTAGCAAATGGCTGCATTA
TGGAACGAAAATACCCTGGCAAATTCAACCCAAACTGGGATATTGAGGAC
TCTATTGCAGGAGGTTCTTGTTGGCAAAAAGCTTTTGCTACTGAGAATAT
AGCTGATGTGGAGTCGATATGTAAATTGAATAATGTTGAATTTGAATGGA
TATCAACAGTAAGCAAGGAACCACCAACATTGGTGACAAGATATAACTCA
TCCTGGTATGTCAATCAACGATTGGTTTTACAGACACCCTTGCTAGGGAA
AGCAGTTTACCAAGACATGATCAAACGTTTTCCCCAAAGGTTTGACAACC
AAAAAATGCACGGAACTGTGGAAGGTGGTTCAGTTGCCCCAAAAGTGGAT
CTCTTACATCCTAACATTCCTGGCAAACCTTTTCTTGAAGAATCGGAAAT
TGTTGCGTTGATGGAAGCTCTTTGGAAACATGTTGTGTTTATTGAGTGGG
AAAAAGGTGATGTTGTTTTGATAGACAACATGAATATGGCTCATGGAAGG
ATGAATTGTGCAGGGAAACGGAGGATTGTTGCCTCAATGGCACACAAGCG
TTAAAGATTATCTGGTCAATGAGAAATATTGGAAtcataaacttttttta
atttattaatttACGCATCTGGAAAGTATGATTATATTTCCGtttatcat
ttttcaaattttacacgTTTACGTATACTTGtaatttgtaattgcttgca
gtattcctTTGAATTCATTTATTGTTCGGTTTCCCAAATGCCTAAGGGTG
TTTGGCATTTGAAATGTCAATTTGAGCGGAGGAATCCCCTTTTCAagcat
ttcaaaacaaacaaagagaaaataatCACATTTCACAGGTTATGACGAAA
AATACTATGGAAACGGCCGAAAGTATCAAAATTGAGTCCCAAATGCCAAA
TACCAAAAGCCGTCATATGTAAATGAGTGTGTGGTCTGAAACTGTTGATT
GCATCTTTTTGTTTGTGATAGTGATTCCAAGACCACCGACACGAGGcgga
aatatgaaaaaatttcttttacgATCGTTACATGTGTAACCATTGAGGAG
AGCTGATAGGAGTGATGCTCATATGACTTCTTCAAATGGAACAAAATATT
CTCTTGTCACAGGTACGGTCCTTATGATGTAGGTTGTGTTGTATACTGTT
TGTGAATGCACAGTACGCTGAATGGGGATGCATCCTGGCAATTTTGCTCA
GTGACTTTTTTCAACGataataacactaaatcgaAGGATTAGGAAAGTAA
CCAATCTTTGGACCATATTGAACGATGGTATTCCACTAATCTTCTAACGC
TTCGATAGAGCCAAGATCAGTGAGGCCATCAGCAAACGCGATCTTCTTAG
CTGTGCTACCTGCTGCTTCTAGAAGTGGCAAAATCGCTAGCGAGTATGTT
GTCATTGATGTTGGATTTGGATTACCCTTCTTTCGATGCTAATTCTTTGC
CGCGAGTTAGGAATAGACGTGCTGGTTTGGCGTAGCTGCTTTGTAcaacc
c Run BLAST on NCBI transcript from alignment at sc0000197:130755..133099+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014671 ID=TCONS_00014671|Name=TCONS_00014671|organism=Clytia hemisphaerica|type=transcript|length=2345bp|location=Sequence derived from alignment at sc0000197:130755..133099+ (Clytia hemisphaerica)
AGGTGAAAGAAATTTGAGAGCAGATTGAAACGACACAGTAAGTATGTTTT
TATAGTACGAATAGGTAAGTGCTTTGccgtaaaaatctgctctcctacgc
agATCGTTTTTCACCCATATCTACGCTACTGTACTGTAAAAGCTGTTTGG
CTACGCCATCGTCAGAACAAACATAAAAGCAAAGCAAAGGAATCgataaa
aatgtaaatacaTATGAAATTATTCTTTAGGGTATATTCAAGTAATGCCA
TTTCTGAAAAATTGTACAGTAATTGTTGTGTTTTTAGTTGATTGTTAAGT
GACGGTTCCATGGTAGCTATAAACGACGCTTCTAGAAACTTCCTATTCAT
CCCGAAATTTTCTTATGATTCTTTGTCTTAGACCACTCTCGTCATGACCA
TGAAGATTGTAAGAGGGAATGGAAAAGAAATCACTTCGTATATACGAgac
aataaaagtgaaatcataGACGCCTTTGAGACACCCGGCGCCCTTCTCCT
CCGTGAATTCGACACAAATCAGATTGAAATTGATGAAGTTGCCCGATTAA
TAGGATATACACCAGCGCACACTTATATTCCAGGAATCGCTCCAAGGAAA
GCTGCTATAGAAGGAAATCCGTTCGTATTTACTTCGACAGAAGCACCGCC
CCATCTCCCTATCCTTCCTCATACTGAAATGACTTATTGGCCGGACCCTC
CCCATCTTATACTGTTTCAGTGCAAATTTCTTGATAGTTCATGTCCTCAA
GTCAATGCAAATGAAACTGTGCTATTTGACATGAAACTAGCTGCTGCTGA
GCTAaacgaaaatctgcttgagaAGTTAGCAAATGGCTGCATTATGGAAC
GAAAATACCCTGGCAAATTCAACCCAAACTGGGATATTGAGGACTCTATT
GCAGGAGGTTCTTGTTGGCAAAAAGCTTTTGCTACTGAGAATATAGCTGA
TGTGGAGTCGATATGTAAATTGAATAATGTTGAATTTGAATGGATATCAA
CAGTAAGCAAGGAACCACCAACATTGGTGACAAGATATAACTCATCCTGG
TATGTCAATCAACGATTGGTTTTACAGACACCCTTGCTAGGGAAAGCAGT
TTACCAAGACATGATCAAACGTTTTCCCCAAAGGTTTGACAACCAAAAAA
TGCACGGAACTGTGGAAGGTGGTTCAGTTGCCCCAAAAGTGGATCTCTTA
CATCCTAACATTCCTGGCAAACCTTTTCTTGAAGAATCGGAAATTGTTGC
GTTGATGGAAGCTCTTTGGAAACATGTTGTGTTTATTGAGTGGGAAAAAG
GTGATGTTGTTTTGATAGACAACATGAATATGGCTCATGGAAGGATGAAT
TGTGCAGGGAAACGGAGGATTGTTGCCTCAATGGCACACAAGCGTTAAAG
ATTATCTGGTCAATGAGAAATATTGGAAtcataaactttttttaatttat
taatttACGCATCTGGAAAGTATGATTATATTTCCGtttatcatttttca
aattttacacgTTTACGTATACTTGtaatttgtaattgcttgcagtattc
ctTTGAATTCATTTATTGTTCGGTTTCCCAAATGCCTAAGGGTGTTTGGC
ATTTGAAATGTCAATTTGAGCGGAGGAATCCCCTTTTCAagcatttcaaa
acaaacaaagagaaaataatCACATTTCACAGGTTATGACGAAAAATACT
ATGGAAACGGCCGAAAGTATCAAAATTGAGTCCCAAATGCCAAATACCAA
AAGCCGTCATATGTAAATGAGTGTGTGGTCTGAAACTGTTGATTGCATCT
TTTTGTTTGTGATAGTGATTCCAAGACCACCGACACGAGGcggaaatatg
aaaaaatttcttttacgATCGTTACATGTGTAACCATTGAGGAGAGCTGA
TAGGAGTGATGCTCATATGACTTCTTCAAATGGAACAAAATATTCTCTTG
TCACAGGTACGGTCCTTATGATGTAGGTTGTGTTGTATACTGTTTGTGAA
TGCACAGTACGCTGAATGGGGATGCATCCTGGCAATTTTGCTCAGTGACT
TTTTTCAACGataataacactaaatcgaAGGATTAGGAAAGTAACCAATC
TTTGGACCATATTGAACGATGGTATTCCACTAATCTTCTAACGCTTCGAT
AGAGCCAAGATCAGTGAGGCCATCAGCAAACGCGATCTTCTTAGCTGTGC
TACCTGCTGCTTCTAGAAGTGGCAAAATCGCTAGCGAGTATGTTGTCATT
GATGTTGGATTTGGATTACCCTTCTTTCGATGCTAATTCTTTGCCGCGAG
TTAGGAATAGACGTGCTGGTTTGGCGTAGCTGCTTTGTAcaaccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014671-exon-sc0000197-1491911889:130755..130791 | TCONS_00014671-exon-sc0000197-1491911889:130755..130791 | Clytia hemisphaerica | exon |
| TCONS_00014671-exon-sc0000197-1510915933:130755..130791 | TCONS_00014671-exon-sc0000197-1510915933:130755..130791 | Clytia hemisphaerica | exon |
| TCONS_00014671-exon-sc0000197-1575043694:130755..130791 | TCONS_00014671-exon-sc0000197-1575043694:130755..130791 | Clytia hemisphaerica | exon |
| TCONS_00014671-exon-sc0000197-1491911889:131136..133099 | TCONS_00014671-exon-sc0000197-1491911889:131136..133099 | Clytia hemisphaerica | exon |
| TCONS_00014671-exon-sc0000197-1510915933:131136..133099 | TCONS_00014671-exon-sc0000197-1510915933:131136..133099 | Clytia hemisphaerica | exon |
| TCONS_00014671-exon-sc0000197-1575043694:131136..133099 | TCONS_00014671-exon-sc0000197-1575043694:131136..133099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000197 | supercontig | sc0000197:130755..133099 + |
Blast
The following BLAST results are available for this feature:
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