TCONS_00014667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014667
Unique NameTCONS_00014667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014667 ID=TCONS_00014667|Name=TCONS_00014667|organism=Clytia hemisphaerica|type=transcript|length=167bp
CATACCAGTGATTTCTGTGACATCATCTGCAGCTTTTCTGGCAAGTTCAG
CTGAAACTTTGTTTAGGCGATataCCAGGTGCTCTAGTGCATAATCAGCT
TGAGCAATTGATGTTCCACTGAATGTGTTTGTTTCTATGAAATCAGCACC
AGCTTCTAGGTAAGCCT
Run BLAST on NCBI

transcript from alignment at sc0000197:31155..31502+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014667 ID=TCONS_00014667|Name=TCONS_00014667|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at sc0000197:31155..31502+ (Clytia hemisphaerica)
CATACCAGTGATTTCTGTGACATCATCTGCAGCTTTTCTGGCAAGTTCAG
CTGAAACTTTGTTTAGGCGATATAcctaaaaaatataaagcaTAGAAAAT
cggaatattttttttgaaattctcaatCATAATAAGGATAATTATGATCA
AAGAAACTCTAGTAAACGTATGTGAATTTATGCTTGAAATTGTTGTACTG
AAATATATACAagttaaaaatgaaagaaggtgaatatttcattaaaaaat
acataCCAGGTGCTCTAGTGCATAATCAGCTTGAGCAATTGATGTTCCAC
TGAATGTGTTTGTTTCTATGAAATCAGCACCAGCTTCTAGGTAAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008213XLOC_008213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014667-exon-sc0000197-1491911889:31155..31225TCONS_00014667-exon-sc0000197-1491911889:31155..31225Clytia hemisphaericaexon
TCONS_00014667-exon-sc0000197-1510915933:31155..31225TCONS_00014667-exon-sc0000197-1510915933:31155..31225Clytia hemisphaericaexon
TCONS_00014667-exon-sc0000197-1575043694:31155..31225TCONS_00014667-exon-sc0000197-1575043694:31155..31225Clytia hemisphaericaexon
TCONS_00014667-exon-sc0000197-1491911889:31407..31502TCONS_00014667-exon-sc0000197-1491911889:31407..31502Clytia hemisphaericaexon
TCONS_00014667-exon-sc0000197-1510915933:31407..31502TCONS_00014667-exon-sc0000197-1510915933:31407..31502Clytia hemisphaericaexon
TCONS_00014667-exon-sc0000197-1575043694:31407..31502TCONS_00014667-exon-sc0000197-1575043694:31407..31502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000197supercontigsc0000197:31155..31502 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00014667 vs. Swiss-Prot (Human)
Match: METH (Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.855e-18
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = -3 
Query:    1 YLEAGADFIETNTFSGTSIAQADYALEHLVYRLNKVSAELARKAADDVTEITGM 162
            YL AGAD IETNTFS TSIAQADY LEHL YR+N  SA +ARKAA++VT  TG+
Sbjct:   85 YLLAGADIIETNTFSSTSIAQADYGLEHLAYRMNMCSAGVARKAAEEVTLQTGI 138
The following BLAST results are available for this feature:
BLAST of TCONS_00014667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
METH2.855e-1872.22Methionine synthase OS=Homo sapiens GN=MTR PE=1 SV... [more]
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