TCONS_00014658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014658
Unique NameTCONS_00014658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014658 ID=TCONS_00014658|Name=TCONS_00014658|organism=Clytia hemisphaerica|type=transcript|length=909bp
GTGGAGTTGGTGTTCCtgttgaatgtgcagcaggggttgctggttctggt
gaatgtgcagccgAAGTTGGTGCTTTTGATGattgtgcagcaggagttgg
tggttctggtgaatgtgatcatggagttggtggttctggtgaatgtgcat
aaGGAGTCGGTGATTCTGTTGAATTAGCAGCAGGGATTGGTGTTTTTGGT
GAATGGGaggcaggagttgatggttctggtgaatataccggtactggtga
atttgatggttgagttgatggttctgtTGAATGCAACGTTGGAGTTTGAG
TTGCTGATGAAGTTGGAGTGCATATGATTGTGTAGCAGGAGTTTCAGTTC
CTTGTGGATGTAATGGTGGAGCTTATAGTCCAAACCTATAAGCCAACACA
TTATTACTAATATTAGGTATCTGGCAAAATAAGTCAAACACTGACAGTTG
TTAATGTCTTTAGATAGCATTTATCACAATTCTAGCACTATAGAAAACTG
TCAAACACCTGAATACAATATATTCCAAAATCATGATAATCCATCCATCC
CAAGTCCTGATGTAGATCTACCAAAACTAACAGTTTTGTGCTAAGAAGCA
TCAGAACTGACATGTATTTCTGTAGAACCTTTATAACCACAAGAATCTGT
TGCATAACCACCAGAACAACCAGTTCCTGCTGCATAATTACCATAATCAC
AAGTTGCTGCTTCAGAATAACCAGATCCTTTAGGTTTTGTTGCAGAATCA
CCAGAACAACAAGGTTCTGTTGCAAAGTCACCAGTTCATGTCACAGAATC
AACAGAACAATCATGTCCTGCTGCAGAATCACAAGGACCACCAACTCCac
tatcacattcaccagaaccatcaactcaacTATCACGTTCACCAGAGCct
ccaactcct
Run BLAST on NCBI

protein sequence of TCONS_00014658-protein

>TCONS_00014658-protein ID=TCONS_00014658-protein|Name=TCONS_00014658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MYFCRTFITTRICCITTRTTSSCCIITIITSCCFRITRSFRFCCRITRTT
RFCCKVTSSCHRINRTIMSCCRITRTTNSTITFTRTINSTITFTRASNS
Run BLAST on NCBI

transcript from alignment at sc0000191:191463..192371

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014658 ID=TCONS_00014658|Name=TCONS_00014658|organism=Clytia hemisphaerica|type=transcript|length=909bp|location=Sequence derived from alignment at sc0000191:191463..192371 (Clytia hemisphaerica)
aggagttggagGCTCTGGTGAACGTGATAgttgagttgatggttctggtg
aatgtgatagtGGAGTTGGTGGTCCTTGTGATTCTGCAGCAGGACATGAT
TGTTCTGTTGATTCTGTGACATGAACTGGTGACTTTGCAACAGAACCTTG
TTGTTCTGGTGATTCTGCAACAAAACCTAAAGGATCTGGTTATTCTGAAG
CAGCAACTTGTGATTATGGTAATTATGCAGCAGGAACTGGTTGTTCTGGT
GGTTATGCAACAGATTCTTGTGGTTATAAAGGTTCTACAGAAATACATGT
CAGTTCTGATGCTTCTTAGCACAAAACTGTTAGTTTTGGTAGATCTACAT
CAGGACTTGGGATGGATGGATTATCATGATTTTGGAATATATTGTATTCA
GGTGTTTGACAGTTTTCTATAGTGCTAGAATTGTGATAAATGCTATCTAA
AGACATTAACAACTGTCAGTGTTTGACTTATTTTGCCAGATACCTAATAT
TAGTAATAATGTGTTGGCTTATAGGTTTGGACTATAAGCTCCACCATTAC
ATCCACAAGGAACTGAAACTCCTGCTACACAATCATATGCACTCCAACTT
CATCAGCAACTCAAACTCCAACGTTGCATTCAacagaaccatcaactcaa
ccatcaaattcaccagtaccggtatattcaccagaaccatcaactcctgc
ctCCCATTCACCAAAAACACCAATCCCTGCTGCTAATTCAACAGAATCAC
CGACTCCttatgcacattcaccagaaccaccaactccatgatcacattca
ccagaaccaccaactcctgctgcacaatCATCAAAAGCACCAACTTcggc
tgcacattcaccagaaccagcaacccctgctgcacattcaacaGGAACAC
CAACTCCAC

Coding sequence (CDS) from alignment at sc0000191:191463..192371

>TCONS_00014658 ID=TCONS_00014658|Name=TCONS_00014658|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0000191:191463..192371 (Clytia hemisphaerica)
ggagttggagGCTCTGGTGAACGTGATAgttgagttgatggttctggtga
atgtgatagtGGAGTTGGTGGTCCTTGTGATTCTGCAGCAGGACATGATT
GTTCTGTTGATTCTGTGACATGAACTGGTGACTTTGCAACAGAACCTTGT
TGTTCTGGTGATTCTGCAACAAAACCTAAAGGATCTGGTTATTCTGAAGC
AGCAACTTGTGATTATGGTAATTATGCAGCAGGAACTGGTTGTTCTGGTG
GTTATGCAACAGATTCTTGTGGTTATAAAGGTTCTACAGAAATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008204XLOC_008204Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014658-proteinTCONS_00014658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014658-exon-sc0000191-1491911889:191463..192371TCONS_00014658-exon-sc0000191-1491911889:191463..192371Clytia hemisphaericaexon
TCONS_00014658-exon-sc0000191-1510915933:191463..192371TCONS_00014658-exon-sc0000191-1510915933:191463..192371Clytia hemisphaericaexon
TCONS_00014658-exon-sc0000191-1575043694:191463..192371TCONS_00014658-exon-sc0000191-1575043694:191463..192371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000191supercontigsc0000191:191463..192371 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0614006	0	0.65018	0.846499	0.79407	1.38246	0.33638	0.46029	0.123995	0.600689	0.217364	0.244771	0	0	0.0473897	0.0477369	0.142601	0.0673418	0	0.0893128	0	0	1.72249	1.5767	0.0865606	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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