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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014648 ID=TCONS_00014648|Name=TCONS_00014648|organism=Clytia hemisphaerica|type=transcript|length=1518bp
TCGACctaaatttttcgatgaccggcAAATCGCCACGTAATTTCATAAAC
AAACGTGGTCGGGCTCACTAGAAGATATTTGGTTTTAGTAATCGTAAGAC
CGTTTGGCCACGGAAAATTAGCATTTGATTTACTCATGGCGTCCTCGCAG
TGCGGATGATTTTGAGTCAAAGTGCAAAAGCTGTTTGGTTAGGACTGGCA
GCAGCAAACAAAATGGAacagtttttgtttgttttatttattgCATCTAG
TTTTATAACGGTCCATTCGGTAGAATTGACTTTTGAATTGGAAGATAATG
CCAGAGAATGTTTCCACGAAACCATtgtcaacaaaacaaaatgtacACTT
GAGTTTCAGGTTGTAACTGGTGGTCATTATGACGTAGATGTGATAGTTAA
AGATCCCCATGGGAAAATATTATatgatgaaaagaagaaacaatATGACA
GTGTCAACTTTGATGCTGAAGTTCTAGGGGAATACGAGTTTTGCTTCAGT
AATGAGTTCTCAAGCTACAGTCACAAAACCATTTACATGGACTTCCAAGA
CGGCAGTAAAGAACCCCCTCTACCTATCGGGCGAGGTCGAGGAATGGATG
AAGGTCAATATTCCTTAACCCTCATTGAGTCATCAGCTGTACAAATTCAT
GAATCATTGAACACTATTATTGATTATCAAACACACCATCGTTTAAGAGA
AGCCAAATCAAGAAGCTTAGCTGAATACATTTTTGAACGTGTGAACTATT
GGTCTATTGGTCAAACTTTGATCATGTTGGGCATGTCACTCTTACAGGTG
TTCACGTTGAAAAGGTTATTCACTGAAAAACGAGATCGAATTTGAAAGAA
ATGACGTAATTCGGCTTACACACACAATTTACTGAAAGATTAACCGAAAA
ACTTTATTTCATATGGTCGATGTTCCGGTTTGGATCAGTCTTTGGTAAAC
CTCTGGAGGATACCTATGTGTAATTTGAAGTGATGTTGATGTTGATTGGA
AAGGtgtttttaataaaattctAGACTGTtagacaaatttttatacattt
tagTTTCTCATTGTTCTTATGCTTCTTGTAGTTATGTATCTCTCCATGTA
ATTCAATTTTGAAGTTCTGGCGTTTTCCACTTCGATTTTCTCTTCAGCTT
CATAAATATTGTGACTACCATTGTTAAATGGGTATGAAAATACCTATCAA
GCTTTTCAATAGCGTACTTTTGTAGACCTTGTTTGGCCACCACCTTTCTA
ACTAGACTCAggttttaaattattttatttttgttataattaGAGGTGGT
TTTTATGTtgcttttgatattttgaaagattcatttttaaaaacattttc
acgaTCAGCCAAGAATTTCACCTGAATGTCTCTCGTGCAGAGAAAACTTT
ATCAACTAAGAGAAATAATTCTGAGATTCTTGGCTGGGCtgtatatttca
tttttttgtaaactttttatgtaaaaatttcaaagttataTCAAATATAT
Acgagaaaatctttaaaa Run BLAST on NCBI protein sequence of TCONS_00014648-protein >TCONS_00014648-protein ID=TCONS_00014648-protein|Name=TCONS_00014648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MILSQSAKAVWLGLAAANKMEQFLFVLFIASSFITVHSVELTFELEDNAR
ECFHETIVNKTKCTLEFQVVTGGHYDVDVIVKDPHGKILYDEKKKQYDSV
NFDAEVLGEYEFCFSNEFSSYSHKTIYMDFQDGSKEPPLPIGRGRGMDEG
QYSLTLIESSAVQIHESLNTIIDYQTHHRLREAKSRSLAEYIFERVNYWS
IGQTLIMLGMSLLQVFTLKRLFTEKRDRI Run BLAST on NCBI transcript from alignment at sc0000191:472535..476811- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014648 ID=TCONS_00014648|Name=TCONS_00014648|organism=Clytia hemisphaerica|type=transcript|length=4277bp|location=Sequence derived from alignment at sc0000191:472535..476811- (Clytia hemisphaerica)
TCGACCTAAATTTTTCGATGACCGGCAAATCGCCACGTAATTTCATAAAC
AAACGTGGTCGGGCTCACTAGAAGATATTTGGTTTTAGTAATCGTAAGAC
CGTTTGGCCACGGAAAATTAGCATTTGATTTACTCATGGCGTCCTCGCAG
TGCGGATGATTTTGAGTCAAAGTGCAAAAGCTGTTTGGTTAGGACTGGCA
GCAGCAAACAAAATGGAACAGTTTTTGTTTGTTTTATTTATTGCATCTAG
TTTTATAACGGTCCATTCGGTAGAATTGACTTTTGAATTGGAAGATAATG
CCAGAGAATGTTTCCACGAAACCATTGTCAACAAAACAAAATGTACACTT
GAGTTTCAGGTATAAAAGCTTTTATACTGTACACTTTTTTGCTTCATACT
TGCCCTATAACAACTTTTTTTTACTAAGCTCTACTCATCAAGTTCTGTCA
TTATTCTCTGTTTGAATCTTTTTCTAAAAATTTTTTAAGCACACCCTTGA
CCCAATGTTATAAGATAAACCAGACGGTACTAATCGAACATTCGATAATT
AATTGTGATCGAAGTATCTAATCAATAATGATCGATAATAATCGAAGTTG
GTCAGTGACCACCTATCGGTTTTATCGGTGATCAAATATTCACTCGACTC
CAGATTATGGCATTTTCTTCTCAACCATTTTCAATTACAATTTGCTCAAT
CATTACGATTACTTTTCGAATACCTTTGATCATATTGAATACCTTAGATT
GTATTGAGTACCGTGAGATCGGCTAACTTGCATCAGTGGAGGCTAACATG
CATAGTTAGAGACAGGAGTAATAGGAAAGCTTGAATCACTGATTGAAAAA
GGATTATTCCTCTCTGACACTACTAACCAAAGAAAAACTGTTTTGACCTT
TCTATCAATTTCAGCTGATAAATAAAAGGTAGCCTGGATATCCAAGCTCA
AAATTTTAGAAAAAACAAAAATTACCTCAGCATACAAAGTTCTAAAATTA
TAGAGCTTGGTCTCCCTAAAGAATGAAAGTGCAAACCCATGTTTCCTAGC
CAACCCAGGGCAGCAAAAAAGAAATTAATAAAAAGCAGTCTTACAAGATC
TAACACTATTTAAAACATCCAAAGATTACACCAAAGTCCATAAAAAAGTT
TGCATGCATTATCATGACCAACCATGTTTTCTTGGAAAATGAACTGGCCT
CTGTTTTCTTCTTTTTCATGTTTTCATGTAACAGAAAGCCCTATCTTCAC
TAGCAACTGGAGGACTATCCTTTTTTTGATTTAGAATTGCTCCACGCCGT
GTAGATTGGCCCTTACGGTTTTAGCGAAGTGAGCACAAGCAAGCGGATTG
CATTCTCTTTAAGAGAATGCAAATCGCTCTAGGGAGACCAAGCTGTAAAC
CAGAACATAAAATATCAAAACTAGACTGTGAAATAGTTTACAGCCTGGAT
ATCCAGGCTAATAAAAAGGGTGTCGGAATTAGAGGAGGGGTGTCAACATT
AGACCAAGTTACGGTAAATGACCTGGCTGGTCATTAAAATACATAAAGTT
AAATCAAAACAAAAATGGTAGAGTAGAGCTGCGAGAGGAGCTGCGTAATT
TCATTTGTTTTGAAATTTTGCTGGTTTAATTGGTCAGTCATTCGATAGCT
ATGGTATGCAAGTTTCCCTCAACTGATACAAGTTACCCAACTTCACGGTG
CTTTCCAGCCTTCAATTTTATCAAATATGTTTCCAGTAGCAGCGCATCAA
AATAATCTAAAACCAAGTTTACTTCGGCCAATCAAAACACGCGATTCATG
TGCAAAAACCACTTTCGTTTTCACCGACCAATCAGAATGCATGATATGAG
TTATTTGGGGCAGGAAACCCAGGGCGAAGGCACACAAAATGGCAGGGAAA
TAAGGGGGTCAATCTTTATGGCAGGGCTTCTTTTTGTGCTTTGGTTTTTG
TCACTCGCGCGACAAATTATACACTCGTTATTTGTTGATTCCATTGGGCG
ATAGGCGGTTAGGCGACGGGCGTTCTCTAATTCTCCAATCGGCGTCCGGT
CATTTTGAATGAAAACAACAAAAAAACTTGCCATCTTTACAAAAATTGTA
TTTTTGATTTTTCAAACATTCGTCTTAAGCGTTCACTTCCACAATAATTT
CAAGTAATTGTTATGTAATTCCACTTTCAATTAGTCGGGTTCATCATATA
GACGCACACTGTTCTGGGGGTAAGTGTTGTTGAAGCAATACAGATTATTC
TTAAAGAGATTCCTATTACGAATAGAACAATTGAGAACATCGTAAGAACA
TTCAGGAACATTTAAGCATGAAAATTTCAAAAAATTAAGAACAGCCCAGC
CTGTGTGCCAAAATTTTCTGTTAAAAAAAAGCATGTAATTTGTTAAGAAA
TGCAGAGGGGCAAGTGCTCATAAAGTCCTCCAAAATTTTGAATATCTGCA
TGATAAAAGGACAAGTTGTTTGGATCCTACAATTCTTGTCACAAAGTTTT
GGCTATAACAATACATTTTTCCCTCACTGATTTTTTAAAGGTTGTAACTG
GTGGTCATTATGACGTAGATGTGATAGTTAAAGATCCCCATGGGAAAATA
TTATATGATGAAAAGAAGAAACAATATGACAGTGTCAACTTTGATGCTGA
AGTTCTAGGTTTGTGACTTTTTGTTGTTTTTTTGCACTGGTCCCCTGGCC
GAAAATGAGATTTCCTTTTCTTCACATCATTTGATGCTAATATAATCAGT
GCTAACTCAATTAAAATGATCCAATTTTCTTTAATTGGATACCGTAGATT
TAGATAATTTGAACTTGTGGTATTGTTTTAACTCCTGTCTGATTAGTATA
ATAGTAGCTTCTTAATAAAACTATTGTCAAGTATTCTAGTGTTTTTTAGC
TGCAATCCTATTTATTCAGCAATTTCATTAAAATATTATAGTAATCAAAC
GATCTTGAAGGCTTGCCTGAAATTGTCTCTTGGGTTGTGCATATATTGTA
TCTAATTTGCTAGCCCCCCTAACAATAAAAGTTCTTTTCGGATTTTTCTT
AACCTCCCTTGGACTGTCATGGCTAGCCTTCAGGGCCATTTTAGAAATGT
ACTATTTTCAAAATGTAAATAAATTATCTTGATAACCACTGATTTTTCTG
AATGCTGAATCCAAGAGACAACATAATTAACATAATGAGAGGCAAGCTTT
CAAGGTGTTCAAGAAAACCACCATGTCTCTTTTCAGGGGAATACGAGTTT
TGCTTCAGTAATGAGTTCTCAAGCTACAGTCACAAAACCATTTACATGGA
CTTCCAAGACGGCAGTAAAGAACCCCCTCTACCTATCGGGCGAGGTCGAG
GAATGGATGAAGGTCAATATTCCTTAACCCTCATTGAGTCATCAGCTGTA
CAAATTCATGAATCATTGAACACTATTATTGATTATCAAACACACCATCG
TTTAAGAGAAGCCAAATCAAGAAGCTTAGCTGAATACATTTTTGAACGTG
TGAACTATTGGTCTATTGGTCAAACTTTGATCATGTTGGGCATGTCACTC
TTACAGGTGTTCACGTTGAAAAGGTTATTCACTGAAAAACGAGATCGAAT
TTGAAAGAAATGACGTAATTCGGCTTACACACACAATTTACTGAAAGATT
AACCGAAAAACTTTATTTCATATGGTCGATGTTCCGGTTTGGATCAGTCT
TTGGTAAACCTCTGGAGGATACCTATGTGTAATTTGAAGTGATGTTGATG
TTGATTGGAAAGGTGTTTTTAATAAAATTCTAGACTGTTAGACAAATTTT
TATACATTTTAGTTTCTCATTGTTCTTATGCTTCTTGTAGTTATGTATCT
CTCCATGTAATTCAATTTTGAAGTTCTGGCGTTTTCCACTTCGATTTTCT
CTTCAGCTTCATAAATATTGTGACTACCATTGTTAAATGGGTATGAAAAT
ACCTATCAAGCTTTTCAATAGCGTACTTTTGTAGACCTTGTTTGGCCACC
ACCTTTCTAACTAGACTCAGGTTTTAAATTATTTTATTTTTGTTATAATT
AGAGGTGGTTTTTATGTTGCTTTTGATATTTTGAAAGATTCATTTTTAAA
AACATTTTCACGATCAGCCAAGAATTTCACCTGAATGTCTCTCGTGCAGA
GAAAACTTTATCAACTAAGAGAAATAATTCTGAGATTCTTGGCTGGGCTG
TATATTTCATTTTTTTGTAAACTTTTTATGTAAAAATTTCAAAGTTATAT
CAAATATATACGAGAAAATCTTTAAAA Coding sequence (CDS) from alignment at sc0000191:472535..476811- >TCONS_00014648 ID=TCONS_00014648|Name=TCONS_00014648|organism=Clytia hemisphaerica|type=CDS|length=2070bp|location=Sequence derived from alignment at sc0000191:472535..476811- (Clytia hemisphaerica)
GGGAATACGAGTTTTGCTTCAGTAATGAGTTCTCAAGCTACAGTCACAAA
ACCATTTACATGGACTTCCAAGACGGCAGTAAAGAACCCCCTCTACCTAT
CGGGCGAGGTCGAGGAATGGATGAAGGTCAATATTCCTTAACCCTCATTG
AGTCATCAGCTGTACAAATTCATGAATCATTGAACACTATTATTGATTAT
CAAACACACCATCGTTTAAGAGAAGCCAAATCAAGAAGCTTAGCTGAATA
CATTTTTGAACGTGTGAACTATTGGTCTATTGGTCAAACTTTGATCATGT
TGGGCATGTCACTCTTACAGGTGTTCACGTTGAAAAGGTTATTCACTGAA
AAACGAGATCGAATTTGAGTTGTAACTGGTGGTCATTATGACGTAGATGT
GATAGTTAAAGATCCCCATGGGAAAATATTATATGATGAAAAGAAGAAAC
AATATGACAGTGTCAACTTTGATGCTGAAGTTCTAGATGATTTTGAGTCA
AAGTGCAAAAGCTGTTTGGTTAGGACTGGCAGCAGCAAACAAAATGGAAC
AGTTTTTGTTTGTTTTATTTATTGCATCTAGTTTTATAACGGTCCATTCG
GTAGAATTGACTTTTGAATTGGAAGATAATGCCAGAGAATGTTTCCACGA
AACCATTGTCAACAAAACAAAATGTACACTTGAGTTTCAGGGGAATACGA
GTTTTGCTTCAGTAATGAGTTCTCAAGCTACAGTCACAAAACCATTTACA
TGGACTTCCAAGACGGCAGTAAAGAACCCCCTCTACCTATCGGGCGAGGT
CGAGGAATGGATGAAGGTCAATATTCCTTAACCCTCATTGAGTCATCAGC
TGTACAAATTCATGAATCATTGAACACTATTATTGATTATCAAACACACC
ATCGTTTAAGAGAAGCCAAATCAAGAAGCTTAGCTGAATACATTTTTGAA
CGTGTGAACTATTGGTCTATTGGTCAAACTTTGATCATGTTGGGCATGTC
ACTCTTACAGGTGTTCACGTTGAAAAGGTTATTCACTGAAAAACGAGATC
GAATTTGAGTTGTAACTGGTGGTCATTATGACGTAGATGTGATAGTTAAA
GATCCCCATGGGAAAATATTATATGATGAAAAGAAGAAACAATATGACAG
TGTCAACTTTGATGCTGAAGTTCTAGATGATTTTGAGTCAAAGTGCAAAA
GCTGTTTGGTTAGGACTGGCAGCAGCAAACAAAATGGAACAGTTTTTGTT
TGTTTTATTTATTGCATCTAGTTTTATAACGGTCCATTCGGTAGAATTGA
CTTTTGAATTGGAAGATAATGCCAGAGAATGTTTCCACGAAACCATTGTC
AACAAAACAAAATGTACACTTGAGTTTCAGGGGAATACGAGTTTTGCTTC
AGTAATGAGTTCTCAAGCTACAGTCACAAAACCATTTACATGGACTTCCA
AGACGGCAGTAAAGAACCCCCTCTACCTATCGGGCGAGGTCGAGGAATGG
ATGAAGGTCAATATTCCTTAACCCTCATTGAGTCATCAGCTGTACAAATT
CATGAATCATTGAACACTATTATTGATTATCAAACACACCATCGTTTAAG
AGAAGCCAAATCAAGAAGCTTAGCTGAATACATTTTTGAACGTGTGAACT
ATTGGTCTATTGGTCAAACTTTGATCATGTTGGGCATGTCACTCTTACAG
GTGTTCACGTTGAAAAGGTTATTCACTGAAAAACGAGATCGAATTTGAGT
TGTAACTGGTGGTCATTATGACGTAGATGTGATAGTTAAAGATCCCCATG
GGAAAATATTATATGATGAAAAGAAGAAACAATATGACAGTGTCAACTTT
GATGCTGAAGTTCTAGATGATTTTGAGTCAAAGTGCAAAAGCTGTTTGGT
TAGGACTGGCAGCAGCAAACAAAATGGAACAGTTTTTGTTTGTTTTATTT
ATTGCATCTAGTTTTATAACGGTCCATTCGGTAGAATTGACTTTTGAATT
GGAAGATAATGCCAGAGAATGTTTCCACGAAACCATTGTCAACAAAACAA
AATGTACACTTGAGTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00014648-exon-sc0000191-1575043694:476453..476811 | TCONS_00014648-exon-sc0000191-1575043694:476453..476811 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1575043694:474154..474271 | TCONS_00014648-exon-sc0000191-1575043694:474154..474271 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1575043694:472535..473575 | TCONS_00014648-exon-sc0000191-1575043694:472535..473575 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1510915933:476453..476811 | TCONS_00014648-exon-sc0000191-1510915933:476453..476811 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1510915933:474154..474271 | TCONS_00014648-exon-sc0000191-1510915933:474154..474271 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1510915933:472535..473575 | TCONS_00014648-exon-sc0000191-1510915933:472535..473575 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1491911889:476453..476811 | TCONS_00014648-exon-sc0000191-1491911889:476453..476811 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1491911889:474154..474271 | TCONS_00014648-exon-sc0000191-1491911889:474154..474271 | Clytia hemisphaerica | exon |
| TCONS_00014648-exon-sc0000191-1491911889:472535..473575 | TCONS_00014648-exon-sc0000191-1491911889:472535..473575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000191 | supercontig | sc0000191:472535..476811 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009038 | GOLD_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006810 | transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00014648 vs. Swiss-Prot (Human)
Match: TMED7 (Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 1.014e-68 Identity = 108/187 (57.75%), Postives = 138/187 (73.80%), Query Frame = 3
Query: 273 ELTFELEDNARECFHETIVNKTKCTLEFQVVTGGHYDVDVIVKDPHGKILYDEKKKQYDSVNFDAEVLGEYEFCFSNEFSSYSHKTIYMDFQDGSKEPPLPIGRGRGMDEGQYSLTLIESSAVQIHESLNTIIDYQTHHRLREAKSRSLAEYIFERVNYWSIGQTLIMLGMSLLQVFTLKRLFTEKR 833
E+TFEL DNA++CF+E I TKCTLEFQV+TGGHYDVD ++DP GK+LY E KKQYDS F A G Y+FCFSNEFS+++HKT+Y DFQ G ++PPL R +LT +ES+ V IHE+L ++IDYQTH RLREA+ RS AE + RV YWS+G+ LI+L +S+ QVF LK F++KR
Sbjct: 36 EITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVG-EDPPLFPSENR-----VSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKR 216
The following BLAST results are available for this feature:
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