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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014638 ID=TCONS_00014638|Name=TCONS_00014638|organism=Clytia hemisphaerica|type=transcript|length=7097bpRun BLAST on NCBI protein sequence of TCONS_00014638-protein >TCONS_00014638-protein ID=TCONS_00014638-protein|Name=TCONS_00014638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1145bp MELSEANSPLLNEYKLDYVKKILPQTFLGGVQLWSSFRLPWYIYVLQFLLRun BLAST on NCBI transcript from alignment at sc0000191:401136..434446- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014638 ID=TCONS_00014638|Name=TCONS_00014638|organism=Clytia hemisphaerica|type=transcript|length=33311bp|location=Sequence derived from alignment at sc0000191:401136..434446- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000191:401136..434446- >TCONS_00014638 ID=TCONS_00014638|Name=TCONS_00014638|organism=Clytia hemisphaerica|type=CDS|length=27504bp|location=Sequence derived from alignment at sc0000191:401136..434446- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014638 vs. Swiss-Prot (Human)
Match: PCX4 (Pecanex-like protein 4 OS=Homo sapiens GN=PCNX4 PE=1 SV=4) HSP 1 Score: 373.629 bits (958), Expect = 1.204e-106 Identity = 331/1169 (28.31%), Postives = 563/1169 (48.16%), Query Frame = 1
Query: 52 PLLNEYKLDYVKKILPQTFLGGVQLWSSFRLPWYIYVLQFLLWFCPFIFGIIFTVILENISDLDVEXXXXXXXXXXXXXXXXXXXXXXXTERSKPSTQTIITNNFFAEDDEIIFTKCFSLTTYKFIISSKKSFINVILHPLVAGITSGXXXXXXXXXXXXXXXXHQTGAIVYFIFGWIVTCIAVYPLIGKPPKEPNSFQLNDLFEFGQLTRGCYVVILMLTDL----LWTSSTFRIVSKVLYLTF---PIFWSFGLLPSIDVFIIWIVEEICTKVLGGTSMANDIRLLLIFIPSCVAVLVCYFITHQTISLILLAVLAMALSTDIPTMVLSTLKRFRVGSIRFQNLELRP-RHYP-TTCV-EISALILHMALTSVIVGLTTYFRKEIHQKDDLVTITGXXXXXXXXXXXXXKQFLQLICFGIIKNP----------VLNLIDPHRNKLHWVLFVLEKFALPIILVLHTSIFVTSKSKESFDLLFVMFSF-RAFRTIFQDIHQSTFNIVVYTIIYWYQIEWNFWQNMEFPSQLFIIFLLIIWT--CSFIKKIWFVILLIIASKSGKSGKENQSKINKSIXXXXXXXXXXXXXXXXXXXXSAPMLPLFTLPLFIIGFPRPKRMWPNADKATKSTSSDWTFYEQLTPALQEALNVEFYSGVFSNAQAGDFYLARFQDRIIWISVLEHGFMYKNIVVKGLELQETSCHTTEAESIDELLDFDSYK-------IINKYFAHTLTLTTKMNLDAYSDAKNVLTGIIDNPDFHQTLSKTFPNVLLFLSMKMFQDKC--KQGVIDDTVNLNSQESNDNILGGIIS-DQPFSSFDTPTPYKATFDETKFTIPQNNKDLLKKNSENNVENKH--ADVSKCNTXXXXXXXXXXXXXXXXXXXXXXXXXXXLQDG-----NMNLQDQHWRSLAS-NGKHTKFIDPPVSWLLSAPFGESELRTMSGVFNSEHYQFFIGSLTLKDED------LILVKNDITLMQSYRLFLLNCFCLLERGGLANDWGINEGA---SHIYKMFCGKLPWSPRMNWIENNQELKQMVIQAYRIAFKLTYDAFLIGENSIEIDEEFLDSIHEMEKEWFVGLEDEVEWWNNILKQCPNILSVGRNEDDGVYTSRLLTQQNLQVPIASINSECVNGLWAALALELYYFTNDDEERYS 3408
PLLN+YK D+ K PQT LGG + + P YIYV Q +L+ P+++G + T +L + L + + G ++ V+ LY + + + I+T + AE+DE FT C T KF+I KK N + H ++AG+ GL ++LLP+ + G + F FGW+ CIA Y LI E +FQ D +E L R Y+ + DL + ++++L++ F P W+ G LP D ++W +E++ LGG+SM+ +RLL++FI S + YFI ++ + LS ++ M ++G+ + ++L P +H+ C+ I L+L + TS++ + + K + I G L+ L ++ ++++ + GI +NP V K+ V +L P ++ S+ S + + V F RAFR ++Q+ + V+ + ++ + W N + L ++ + II FI K+ F + +++ S + K K+ + ++ + P +L++++ ST+LS+P+LPLFTLP+F++GFPRP + WP A T +D +Y Q+ P L L +G G YL RFQDR++WI +LE G+ Y +I +KGLELQETSCHT EA +DE+ + D+++ +N++F + LT T + + YSDA+NVL+GIID+ H+ L K F L+ + + + C + G+ ++ N ++ +L + + P S D + TF++ +++ +KK +E KH D+ N E G + + ++ G +D + L + H+ + P W S S+++ MS +F + YQF + L + L + D L Y ++ C+ L +GI+ A HI +++ G LPWS ++W+ EL Q+ ++A+R KL D +G IE E + + E E++W++GL + +W IL++ P + S+G + + G+YT R+L+ Q L + + +N E V G WA L+ EL Y TNDDEERYS
Sbjct: 6 PLLNDYKQDFFLKRFPQTVLGGPRFKLGYCAPPYIYVNQIILFLMPWVWGGVGT-LLYQLGILKDYYTAALSGGLMLFTAFVIQFTSLYAKNKSTTVERILTTDILAEEDEHEFTSCTGAETVKFLIPGKKYVANTVFHSILAGLACGLGTWYLLPNRITLLYGSTGGTALLFFFGWMTLCIAEYSLIVNTATETATFQTQDTYEIIPLMRPLYIFFFVSVDLAHRFVVNMPALEHMNQILHILFVFLPFLWALGTLPPPDALLLWAMEQVLEFGLGGSSMSTHLRLLVMFIMSAGTAIASYFIPSTVGVVLFMTGFGFLLSLNLSDM------GHKIGT-KSKDLPSGPEKHFSWKECLFYIIILVLALLETSLLHHFAGFSQI---SKSNSQAIVGYGLMILLIILWILREIQSVYIIGIFRNPFYPKDVQTVTVFFEKQTRLMKIGIVRRILLTLVSPFAMIAFLSL---DSSLQGLHSVSVCIGFTRAFRMVWQNTENALLETVIVSTVHLIS-STDIWWNRSLDTGLRLLLVGIIRDRLIQFISKLQFAVTVLLTSWTEK--KQRRKTTATLCILNIVFSPFVLVIIVFSTLLSSPLLPLFTLPVFLVGFPRPIQSWPGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLGLLLPGSHYLGRFQDRLMWIMILECGYTYCSINIKGLELQETSCHTAEARRVDEVFE-DAFEQEYTRVCSLNEHFGNVLTPCTVLPVKLYSDARNVLSGIIDS---HENL-KEFKGDLIKVLVWILVQYCSKRPGMKENVHNTENKGKAPLMLPALNTLPPPKSPEDIDSLNSETFNDWSDDNIFDDEPTIKKV----IEEKHQLKDLPGTNLFIPGSVESQRVGDHSTGTVPENDLYKAVLLGYPAVDKGKQEDMPYIPLMEFSCSHSHLVCLPAEWRTSC-MPSSKMKEMSSLFPEDWYQFVLRQLECYHSEEKASNVLEEIAKDKVLKDFYVHTVMTCYFSL--------FGIDNMAPSPGHILRVYGGVLPWSVALDWLTEKPELFQLALKAFRYTLKLMIDKASLG--PIEDFRELIKYLEEYERDWYIGLVSDEKWKEAILQEKPYLFSLGYDSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWANLSWELLYATNDDEERYS 1137 The following BLAST results are available for this feature:
BLAST of TCONS_00014638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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