TCONS_00014631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014631
Unique NameTCONS_00014631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014631 ID=TCONS_00014631|Name=TCONS_00014631|organism=Clytia hemisphaerica|type=transcript|length=1633bp
TGTCCTGTTCATCGGTTCTCAAAGACTGGAATCCCTTTCACCGTGAAATA
ATAAaattttggaCCACGTATCAGTTTTTGGGGAACGTTTGAAACGAGAA
TGAAGGAGATTGGAGATCTGAAGGAGCTAAACCAGTTTATCGGCAGCTCA
AGCAAAGTGGTGGTAGAATTCCATGCGGAGTGGTGTGGACCTTGTCGAAG
AATCACTCCACAGTTTAAGcAAATATCAGAAGGTCACCCGAACATCTCTT
TCGCTTTGATTGATATGGACGGACAAGATGAGATTTGTGATAAATACAAA
ATCGATGTCTTCCCTACATTCATATTTTATCACAACTCCAAACAATTTGC
GAAAGTCTTCGGTGCAAACGAACACAAACTTCGTGAAAATATCGAGAAAT
TGTCGGAAGCTGTTTagaagcagttttttttacttagaATTCAAGccttt
ttgtagattttgaatattttggctgaaattttccaGGCTTAAAGGTTATG
GTTAATTTTCTAGCTTAGAGGCTTACATTAGCATTTCCCTTGCACCATTT
CTGAAACCTTGAGTTTtactaaaattgaaattgagcCCCATAGTTTATTT
CAGAAAAAATGATGTGCTATTCTAGATATTACATTCTGGACGTGAGGTTG
TGAGGTTGTTtcggggtattacaatagaataactacgataagatctatta
cccctgatttttttcaagttttacaaatttccccttAAAAGCCAAAATGT
gaatttaaaaattcttttgcGTGAAAAAACGTATATTCACATagaatata
cgttttttttataagaagatccaaaaatttttaagtCTGTGGAtattgtt
aactttttgagttttaagattAAAACTTctcaatttgttcttatttCCGC
CACTGAGTTTTTTTATCCAATTTATTCCTGAGAAGTCGGGTATTTTCGAG
TCCCAAAAGCCTTAATATCCTTaaattattcttaatattttggtcatcga
agccttatgatcttgtatagtttgttcttataaagaaagcgTGTAGTTTT
GTCTGTGAAATCGGTGAAGTTGATGTATTTCATACTGGGTTGAATTTATT
TGGGGATTATGTACAGTAGGACCTCCTGTTTTAATCTTAAGCACTGCCAT
CCACTATTAATTGGTTTTCTAATAAATTTTCACTCCGTATTAACAATTAG
GAATTTCCCAACAAGGCCAACAAGGACACAatttttttggttcttttttc
accaaaattcaacgAAAATAGCTTCCTTCTTACCACGAGAAACATTCTTA
TCCTTTCTCGGCTGTTGTTGTTTTCAAGTTCGTTCCAACCATACGTTAGa
gacattttattttcaagttcGCAAAGTGTTGGGTTTTAATctcatcaatt
ttttatttaagggctctgaccatagtgaatttttcataattgccgtgttt
aaaatgtgttttctcactgatgtaaccaataaaactatggcatgttatac
attttctgttagacaaactattcctgaatctgaaaattcaaaactttcat
tgaaaaaatttgatgaagaagaaaatgaagacttttgcgaggaagcgtat
ttcaactttgaagagcttagtttcggcgaagaa
Run BLAST on NCBI

protein sequence of TCONS_00014631-protein

>TCONS_00014631-protein ID=TCONS_00014631-protein|Name=TCONS_00014631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MKEIGDLKELNQFIGSSSKVVVEFHAEWCGPCRRITPQFKQISEGHPNIS
FALIDMDGQDEICDKYKIDVFPTFIFYHNSKQFAKVFGANEHKLRENIEK
LSEAV
Run BLAST on NCBI

transcript from alignment at sc0000191:269189..272406-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014631 ID=TCONS_00014631|Name=TCONS_00014631|organism=Clytia hemisphaerica|type=transcript|length=3218bp|location=Sequence derived from alignment at sc0000191:269189..272406- (Clytia hemisphaerica)
TGTCCTGTTCATCGGTTCTCAAAGACTGGAATCCCTTTCACCGTGAAATA
ATAAGTATAACACGAAACCGTTTTAGTCTTCTTTTTCAAAAAATCAAATC
ACTACACGCTTTTTCTTTTATAAGAATAACTTCTATAAGAATATCAGGGT
GAGATTTCGGGTTTAAAACAATAGGCCTATTGTTTAGAACAATAGAAAAA
TAAGAATAATGCTTACCCTCAACCAAAGTACACTATTCTTTCAAAAAATC
AAACCACTAAAGCAATAACTGTCCGTCATTATTTTTTCTTTTATTGTATT
ATTATGTCATAATGGACTAAATTATACTCTATTGGTTCATATCTAGACCT
TTCTTTAATTTCGTTTCTTGAATAAATCCTTGAATTCAGGAACTTCTTTT
TTTTTTTGATAGAGTGGACTAATTCCTGTCAATTTTCTTGATCATATCCA
TTTTTCTTCTTTCTTGGTATTGTTCAACAAAAACTCTCAAGGTTCAATCT
CTCGTGCTTCGGAAGGACAATTTTTGAGAATTCTTATGAATAAATTACTT
CCCAGCTTTTGATATTTTATCCCCTTTCAGCATGAATTATCTTACAATCT
TTTACAACCTTTTTGAATTGGTGGCTTTTATTTATTTCTCAATTTAATCC
TTTCAGATTTAAATCAGTGTTATGTACGATAAAAAAAAGCTTTAAAGGGA
AGCCCGAATTTTTTTCCAACCTTATTCATTAATAATGAGTAGAGTATAAG
GTCCCAAGATAAACTTGTTATTTTTGTTTCTTGCCTAATGAACATATGAG
GAACTAAGAAAAACTCTTTATTCCAGCAGCGGTTACGATTTAGTAGCTTG
AGACCCCTGCTATAGAACAGTTTCGTGTAAGAAAAAATTGGGAAAAGCTC
AACTTTTAATCACTGCATCTTATTTAAAGAATTTTGGACCACGTATCAGT
TTTTGGGGAACGTTTGAAACGAGAATGAAGGAGATTGGAGATCTGAAGGA
GCTAAACCAGTTTATCGGCAGCTCAAGCAAAGTGGTGGTAGAATTCCATG
CGGAGTGGTGTGGACCTTGTCGAAGAATCACTCCACAGTTTAAGGTATCA
GTTGATTTGACTTTACAGGGCCCAATCTTTTGCAAAGTAAAGCAACCATG
GTTGCGCCTCCTTAGACTCTGTATTTATTGCCCCCCCCCCCACTTTCAAA
TTCATGGCGTGGGCCCTGTTTTATCTACTGGACTGAAAATATTAAAATTT
GAACCTTGCTGATTTCAAATATGTATATTGGTCTGTTGACATTGACTAAT
GGATTTGCATGCTACCTGCAGTTTTGTTACCTGAGGTTTCCGATTCAGAC
TAGTATATCCTTTTAGGACCAAAAGTTACATCCCTCAAAAGAATTCTAAC
CAATAGCCAAAATGGTCCCAATTTAGTGGAATAACACACCCTCTTCTCAC
AGAAAATTTGGTGAAAATCCCCAGTAGAAAATCACTCTCTAATCACTCCC
CGCTGAAAATAATCAGATAAGCAAATCCTTACTGCAAAATATAGTGCCTT
TTTCAATTTTCACTGAATTTCTGGCTTGAAAACAATGAAATTCAAATCCC
AGCCATGAGTTTTGGTCCGTTTTTTTTTGCCCCCACTGGATGAAAAAATC
CTAACCGGTCTGTGAGAAGGGGTGTACTAACTTTTAAACGAAGGAATATA
TGTAAATTCATCCACTAAAATTCCAAAAATTGCTGAATGACCCCCCCCCC
CTACAATTAAGCACATCAGAGTAACTATGAAAACTCTATCTTTTTTTTTT
CTAGCAAATATCAGAAGGTCACCCGAACATCTCTTTCGCTTTGATTGATA
TGGACGGACAAGATGAGATTTGTGATAAATACAAAATCGATGTCTTCCCT
ACATTCATATTTTATCACAACTCCAAACAATTTGCGAAAGTCTTCGGTGC
AAACGAACACAAACTTCGTGAAAATATCGAGAAATTGTCGGAAGCTGTTT
AGAAGCAGTTTTTTTTACTTAGAATTCAAGCCTTTTTGTAGATTTTGAAT
ATTTTGGCTGAAATTTTCCAGGCTTAAAGGTTATGGTTAATTTTCTAGCT
TAGAGGCTTACATTAGCATTTCCCTTGCACCATTTCTGAAACCTTGAGTT
TTACTAAAATTGAAATTGAGCCCCATAGTTTATTTCAGAAAAAATGATGT
GCTATTCTAGATATTACATTCTGGACGTGAGGTTGTGAGGTTGTTTCGGG
GTATTACAATAGAATAACTACGATAAGATCTATTACCCCTGATTTTTTTC
AAGTTTTACAAATTTCCCCTTAAAAGCCAAAATGTGAATTTAAAAATTCT
TTTGCGTGAAAAAACGTATATTCACATAGAATATACGTTTTTTTTATAAG
AAGATCCAAAAATTTTTAAGTCTGTGGATATTGTTAACTTTTTGAGTTTT
AAGATTAAAACTTCTCAATTTGTTCTTATTTCCGCCACTGAGTTTTTTTA
TCCAATTTATTCCTGAGAAGTCGGGTATTTTCGAGTCCCAAAAGCCTTAA
TATCCTTAAATTATTCTTAATATTTTGGTCATCGAAGCCTTATGATCTTG
TATAGTTTGTTCTTATAAAGAAAGCGTGTAGTTTTGTCTGTGAAATCGGT
GAAGTTGATGTATTTCATACTGGGTTGAATTTATTTGGGGATTATGTACA
GTAGGACCTCCTGTTTTAATCTTAAGCACTGCCATCCACTATTAATTGGT
TTTCTAATAAATTTTCACTCCGTATTAACAATTAGGAATTTCCCAACAAG
GCCAACAAGGACACAATTTTTTTGGTTCTTTTTTCACCAAAATTCAACGA
AAATAGCTTCCTTCTTACCACGAGAAACATTCTTATCCTTTCTCGGCTGT
TGTTGTTTTCAAGTTCGTTCCAACCATACGTTAGAGACATTTTATTTTCA
AGTTCGCAAAGTGTTGGGTTTTAATCTCATCAATTTTTTATTTAAGGGCT
CTGACCATAGTGAATTTTTCATAATTGCCGTGTTTAAAATGTGTTTTCTC
ACTGATGTAACCAATAAAACTATGGCATGTTATACATTTTCTGTTAGACA
AACTATTCCTGAATCTGAAAATTCAAAACTTTCATTGAAAAAATTTGATG
AAGAAGAAAATGAAGACTTTTGCGAGGAAGCGTATTTCAACTTTGAAGAG
CTTAGTTTCGGCGAAGAA

Coding sequence (CDS) from alignment at sc0000191:269189..272406-

>TCONS_00014631 ID=TCONS_00014631|Name=TCONS_00014631|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000191:269189..272406- (Clytia hemisphaerica)
CAAATATCAGAAGGTCACCCGAACATCTCTTTCGCTTTGATTGATATGGA
CGGACAAGATGAGATTTGTGATAAATACAAAATCGATGTCTTCCCTACAT
TCATATTTTATCACAACTCCAAACAATTTGCGAAAGTCTTCGGTGCAAAC
GAACACAAACTTCGTGAAAATATCGAGAAATTGTCGGAAGCTGTTTAGAT
GAAGGAGATTGGAGATCTGAAGGAGCTAAACCAGTTTATCGGCAGCTCAA
GCAAAGTGGTGGTAGAATTCCATGCGGAGTGGTGTGGACCTTGTCGAAGA
ATCACTCCACAGTTTAAGCAAATATCAGAAGGTCACCCGAACATCTCTTT
CGCTTTGATTGATATGGACGGACAAGATGAGATTTGTGATAAATACAAAA
TCGATGTCTTCCCTACATTCATATTTTATCACAACTCCAAACAATTTGCG
AAAGTCTTCGGTGCAAACGAACACAAACTTCGTGAAAATATCGAGAAATT
GTCGGAAGCTGTTTAGATGAAGGAGATTGGAGATCTGAAGGAGCTAAACC
AGTTTATCGGCAGCTCAAGCAAAGTGGTGGTAGAATTCCATGCGGAGTGG
TGTGGACCTTGTCGAAGAATCACTCCACAGTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008187XLOC_008187Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014631-proteinTCONS_00014631-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014631-exon-sc0000191-1575043694:272353..272406TCONS_00014631-exon-sc0000191-1575043694:272353..272406Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1575043694:271313..271477TCONS_00014631-exon-sc0000191-1575043694:271313..271477Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1575043694:269189..270602TCONS_00014631-exon-sc0000191-1575043694:269189..270602Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1510915933:272353..272406TCONS_00014631-exon-sc0000191-1510915933:272353..272406Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1510915933:271313..271477TCONS_00014631-exon-sc0000191-1510915933:271313..271477Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1510915933:269189..270602TCONS_00014631-exon-sc0000191-1510915933:269189..270602Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1491911889:272353..272406TCONS_00014631-exon-sc0000191-1491911889:272353..272406Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1491911889:271313..271477TCONS_00014631-exon-sc0000191-1491911889:271313..271477Clytia hemisphaericaexon
TCONS_00014631-exon-sc0000191-1491911889:269189..270602TCONS_00014631-exon-sc0000191-1491911889:269189..270602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000191supercontigsc0000191:269189..272406 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0928678	0.123418	0.41301	0.366657	0.361861	0.321002	5.20184	4.26352	2.03674	1.75947	1.38158	1.8976	0.433907	0.652152	0.632211	0.318896	0.718926	0.900286	0.37287	0.688354	2.27072	2.70626	0.557478	0.534207	0.521771	0.471411	0.350915	0.380092	0.348762	0.0911105
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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