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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014621 ID=TCONS_00014621|Name=TCONS_00014621|organism=Clytia hemisphaerica|type=transcript|length=3340bpRun BLAST on NCBI protein sequence of TCONS_00014621-protein >TCONS_00014621-protein ID=TCONS_00014621-protein|Name=TCONS_00014621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp MAYKANVDLVLGAQWGDEGKGKVVDVLATQANMVCRCQGGSNAGHTVIVGRun BLAST on NCBI transcript from alignment at sc0000191:437828..446675+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014621 ID=TCONS_00014621|Name=TCONS_00014621|organism=Clytia hemisphaerica|type=transcript|length=8848bp|location=Sequence derived from alignment at sc0000191:437828..446675+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000191:437828..446675+ >TCONS_00014621 ID=TCONS_00014621|Name=TCONS_00014621|organism=Clytia hemisphaerica|type=CDS|length=19260bp|location=Sequence derived from alignment at sc0000191:437828..446675+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014621 vs. Swiss-Prot (Human)
Match: PURA1 (Adenylosuccinate synthetase isozyme 1 OS=Homo sapiens GN=ADSSL1 PE=1 SV=1) HSP 1 Score: 503.442 bits (1295), Expect = 1.429e-166 Identity = 252/430 (58.60%), Postives = 321/430 (74.65%), Query Frame = 1
Query: 820 AYKANVDLVLGAQWGDEGKGKVVDVLATQANMVCRCQGGSNAGHTVIVGDKEYKFHLIPSGITNESVKVVIGNGVVLHVPTLFKEIQDNESKGLSNLKERMKISNRTHLVFDMHQQVDGLLE---QLRNKNSLGTTKRGIGPTYSTKALRNGLRMADLMGSFESFTEKFKTLVDYHQRLFPDLKVDVDEELKRYKDYAEMLRPMVEDTIVTLNTELK-KESNILVEGANATMLDIDFGTYPYVXXXXXXXXXXXXXXXXPPQAIKNIYGVVKAYTTRVGAGILPTELLDEDGQKLQKIGAEFGTTTGRARRCGWLDLVVLRFTHMVNGFTALAITKIDVLDDFDEIKVAVDYKMNGEVIPSFPADLADLEKIEVVYETLPGWKTSLCDIRKYEDLPQNAKLYVKKIEEHSGVPVKWISVGKSRDAIITVF 2097
A + V +VLGAQWGDEGKGKVVD+LAT A+++ RCQGG+NAGHTV+V KEY FHL+PSGI N IGNGVV+H+P LF+E + NE KGL + ++R+ IS+R HLVFD HQ VDGL E Q + ++GTTK+GIGPTYS+KA R GLR+ DL+ F+ F+ +FK L HQ +FP L++D++ +LKR K +AE +RPMV D + + L ILVEGANA +LDIDFGTYP+VTSSNC GG CTGLG+PPQ I ++YGVVKAYTTRVG G PTE ++E G LQ G E+G TTGR RRCGWLDL++LR+ HMVNGFTALA+TK+D+LD E+KV V YK+NG+ IP FPA+ L+K+EV YETLPGWK R++EDLP A+ Y++ +E H GV VKW+ VGKSR+++I +F
Sbjct: 28 ATGSRVTVVLGAQWGDEGKGKVVDLLATDADIISRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSSRFKNLAHQHQSMFPTLEIDIEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKILVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGGLLQTRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLGEVKVGVSYKLNGKRIPYFPANQEMLQKVEVEYETLPGWKADTTGARRWEDLPPQAQNYIRFVENHVGVAVKWVGVGKSRESMIQLF 457 The following BLAST results are available for this feature:
BLAST of TCONS_00014621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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