TCONS_00014474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014474
Unique NameTCONS_00014474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014474 ID=TCONS_00014474|Name=TCONS_00014474|organism=Clytia hemisphaerica|type=transcript|length=1593bp
TAGGATTGTTTTGTATACCATGGTGCTCCTCAGAAAGCTTTTTTATGTTT
GCACCATGGGTTATTTTTATGTCGTTAGAATGAGTGATTGAGAAAAGTTT
AATAATACTCGTTAGCCACTCTGTTTGCTGTATAAAAGTTGTACGAGATT
ATTTGATATAACTGATTGCAGAAAGCTCTTTTGCTGACAAGAATCGCGAC
AAGTTTTGAtagattttctctttttctgaTGAGTTTGTAGCTTGTGATGG
AGAAAGTTTTATCAAAGAAAAGTAATTACTTTGTATTGAATAATGACGAG
GTTGGTGGTCATCCAATCATTCGTGAGATGGCagatgaaaagaagaaatt
gtTGGCTAGCCCTGATGATGACTTGGGTTACAAGAACAAAGGGATCATAT
CCAACGATGAGGAGCACGACCTCTCTTTTGCTCTGAAGATCATTAAAGAG
CAAGGTGACCTCCTCAAGACCATGCAAAATGATATGGACGAGCAACGAAG
TTTGAACGCCAAGTTGTCAAGTAAACTGGAAGATCTGACGCGAGATATTC
AAATACTCAACGATTCACATTCCAAAGAAACGATCAAGAAAGATGAGCAA
ATTGATAAATTGAAAAACACTCTGGAAGCTAAGACGGAATTCCAAGCTTC
CTTGATTGATGAGTTGCGATATCAAATACAAAGCATGAGAAATAAAATGG
ACTCCAAACGGCTTACTGAGAATGGTACATCTTCAGGGAAAGCTATCGTC
AAACATAACGAAATTCTTTCACCGACTAAGAAGTTATTGAGGAATAATTC
TGAGGACAGTATCTCGAGTAATGGATCAAATCCGTGTCTTCTATCGAGAA
CCATCGGTCCTCAACGCGCAGAATATGTGTGGAGAATAAATGCCTTCACC
AAAAAGCTGAAGAGAATTCAGTCCAATAGCTACGATGACCCAAGTAGATC
AGAACCTTTTGTAACTGGTCCAAATGGATATCGTTTGTCCATGTGGGCTT
ACTTAAATGGGCGAGGAAAAGGGTTCGATAAATGTCTTGCGGTGTATGTC
CGAATTATGGCTGGTGAATATGACCCTGTGCTACCGTGGCCCATCAAACC
GTGTTATACTTTCCAATTGATCAGCCAAGCGCAAGATCCCAATAAGCGAT
TAGATCTTGTCCGCGTAAGAGACTTGTCAGTGAAACACAGCGGTATTTCG
CGACCTCAGAAAGACGATAAATCCATTATTGTTGGGTTCGATGATTTTAT
TGTTCACGAGGACTTGGAGAAGAAAGAATATTTAGCGGACGATTCTTTGT
TCATCAAATGTATCGTTGAAATTTAATTGCTGCTGGTCTGATTCTCATAA
TTTTTTAGACATGAAACTCTGCTATTTGTTGTCGATGGGATTCATAGAAT
TCTACATCGATGTATTTTATACTCATAATTTATTATTCtccattttcaaa
atgatcttGATACGATTGTGCTAATTTTTCGAGAGGTATTTTTTAGAAAG
AATGTTTTAATTAAAATGTATCAATACATTTTCACTATCCTACTCTGTAT
ACAGCTACCACAAAAAAATCCCGTCTTAGAATTCCCCAACCCG
Run BLAST on NCBI

protein sequence of TCONS_00014474-protein

>TCONS_00014474-protein ID=TCONS_00014474-protein|Name=TCONS_00014474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MEKVLSKKSNYFVLNNDEVGGHPIIREMADEKKKLLASPDDDLGYKNKGI
ISNDEEHDLSFALKIIKEQGDLLKTMQNDMDEQRSLNAKLSSKLEDLTRD
IQILNDSHSKETIKKDEQIDKLKNTLEAKTEFQASLIDELRYQIQSMRNK
MDSKRLTENGTSSGKAIVKHNEILSPTKKLLRNNSEDSISSNGSNPCLLS
RTIGPQRAEYVWRINAFTKKLKRIQSNSYDDPSRSEPFVTGPNGYRLSMW
AYLNGRGKGFDKCLAVYVRIMAGEYDPVLPWPIKPCYTFQLISQAQDPNK
RLDLVRVRDLSVKHSGISRPQKDDKSIIVGFDDFIVHEDLEKKEYLADDS
LFIKCIVEI
Run BLAST on NCBI

transcript from alignment at sc0000188:34715..37008+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014474 ID=TCONS_00014474|Name=TCONS_00014474|organism=Clytia hemisphaerica|type=transcript|length=2294bp|location=Sequence derived from alignment at sc0000188:34715..37008+ (Clytia hemisphaerica)
TAGGATTGTTTTGTATACCATGGTGCTCCTCAGAAAGCTTTTTTATGTTT
GCACCATGGGTTATTTTTATGTCGTTAGAATGAGTGATTGAGAAAAGTTT
AATAATACTCGTTAGCCACTCTGTTTGCTGTATAAAAGTTGTACGAGATT
ATTTGATATAACTGATTGCAGAAAGCTCTTTTGCTGACAAGAATCGCGAC
AAGTTTTGAtagattttctctttttctgaTGAGTTTGTAGCTTGTGATGG
AGAAAGTTTTATCAAAGAAAAGTAATTACTTTGTATTGAATAATGACGAG
GTAAGCGGCTTATATCTTTTGTTATTGCAATCAGAATTTCCAGTGCACAA
GTTACAAAAGTTTAGCTCACTGACTTATTATCAGATCTCAACCGACCCGT
ACTTTCTCTGATCATGGCgcttgaaattttgtttgaaatccTCTTAGTTT
CacaaacatctttttaaagaaaaatatgtaaTGACGAATTCCTGCGTGAA
CAGTTTACTTTCTGATTGCTTGCTCTGATAATTTCTCTTTCTGATGAAGG
GAAATATCAACCCATGTGGACGTTGAACTTATTTGATTTCTGATACGTgg
tgtttttgttttgacaGGTTGGTGGTCATCCAATCATTNTGAAATATCAA
CCCATGTGAACGTTGAacttatttgatttttgatacgtggtgtttttgtt
ttgacaGGTTGGTGGTCATCCAATCATTCGTGAGATGGCagatgaaaaga
agaaattgtTGGCTAGCCCTGATGATGACTTGGTGAGTAAACTTCATGTT
CGTGTTCGTAGCAGTTCGTGGTCATTGCTGAATACGAATTTCATCAATTT
GTATCATAAGTCACAGATAAATTCTCAGAACTAGTTTTCCCTCATTTTTA
AAAGTGACTTCCCTTTTATGGTCATTAAAAGAGGCTAGAGGATGCATTGT
ACAAATCTTATGCGAGTTATGCGAGTTGTAGTCGTGGCGTTCTAAGTCAT
AGATTTAGAACGCTATGGTTgtagtttttattttaaaacctgAATAAAAC
CTTGCTTGTCATCCTTTCTTCGTCAGGGTTACAAGAACAAAGGGATCATA
TCCAACGATGAGGAGCACGACCTCTCTTTTGCTCTGAAGATCATTAAAGA
GCAAGGTGACCTCCTCAAGACCATGCAAAATGATATGGACGAGCAACGAA
GTTTGAACGCCAAGTTGTCAAGTAAACTGGAAGATCTGACGCGAGATATT
CAAATACTCAACGATTCACATTCCAAAGAAACGATCAAGAAAGATGAGCA
AATTGATAAATTGAAAAACACTCTGGAAGCTAAGACGGAATTCCAAGCTT
CCTTGATTGATGAGTTGCGATATCAAATACAAAGCATGAGAAATAAAATG
GACTCCAAACGGCTTACTGAGAATGGTACATCTTCAGGGAAAGCTATCGT
CAAACATAACGAAATTCTTTCACCGACTAAGAAGTTATTGAGGAATAATT
CTGAGGACAGTATCTCGAGTAATGGATCAAATCCGTGTCTTCTATCGAGA
ACCATCGGTCCTCAACGCGCAGAATATGTGTGGAGAATAAATGCCTTCAC
CAAAAAGCTGAAGAGAATTCAGTCCAATAGCTACGATGACCCAAGTAGAT
CAGAACCTTTTGTAACTGGTCCAAATGGATATCGTTTGTCCATGTGGGCT
TACTTAAATGGGCGAGGAAAAGGGTTCGATAAATGTCTTGCGGTGTATGT
CCGAATTATGGCTGGTGAATATGACCCTGTGCTACCGTGGCCCATCAAAC
CGTGTTATACTTTCCAATTGATCAGCCAAGCGCAAGATCCCAATAAGCGA
TTAGATCTTGTCCGCGTAAGAGACTTGTCAGTGAAACACAGCGGTATTTC
GCGACCTCAGAAAGACGATAAATCCATTATTGTTGGGTTCGATGATTTTA
TTGTTCACGAGGACTTGGAGAAGAAAGAATATTTAGCGGACGATTCTTTG
TTCATCAAATGTATCGTTGAAATTTAATTGCTGCTGGTCTGATTCTCATA
ATTTTTTAGACATGAAACTCTGCTATTTGTTGTCGATGGGATTCATAGAA
TTCTACATCGATGTATTTTATACTCATAATTTATTATTCtccattttcaa
aatgatcttGATACGATTGTGCTAATTTTTCGAGAGGTATTTTTTAGAAA
GAATGTTTTAATTAAAATGTATCAATACATTTTCACTATCCTACTCTGTA
TACAGCTACCACAAAAAAATCCCGTCTTAGAATTCCCCAACCCG

Coding sequence (CDS) from alignment at sc0000188:34715..37008+

>TCONS_00014474 ID=TCONS_00014474|Name=TCONS_00014474|organism=Clytia hemisphaerica|type=CDS|length=3240bp|location=Sequence derived from alignment at sc0000188:34715..37008+ (Clytia hemisphaerica)
ATGGAGAAAGTTTTATCAAAGAAAAGTAATTACTTTGTATTGAATAATGA
CGAGGTTGGTGGTCATCCAATCATTCGTGAGATGGCagatgaaaagaaga
aattgtTGGCTAGCCCTGATGATGACTTGGGTTACAAGAACAAAGGGATC
ATATCCAACGATGAGGAGCACGACCTCTCTTTTGCTCTGAAGATCATTAA
AGAGCAAGGTGACCTCCTCAAGACCATGCAAAATGATATGGACGAGCAAC
GAAGTTTGAACGCCAAGTTGTCAAGTAAACTGGAAGATCTGACGCGAGAT
ATTCAAATACTCAACGATTCACATTCCAAAGAAACGATCAAGAAAGATGA
GCAAATTGATAAATTGAAAAACACTCTGGAAGCTAAGACGGAATTCCAAG
CTTCCTTGATTGATGAGTTGCGATATCAAATACAAAGCATGAGAAATAAA
ATGGACTCCAAACGGCTTACTGAGAATGGTACATCTTCAGGGAAAGCTAT
CGTCAAACATAACGAAATTCTTTCACCGACTAAGAAGTTATTGAGGAATA
ATTCTGAGGACAGTATCTCGAGTAATGGATCAAATCCGTGTCTTCTATCG
AGAACCATCGGTCCTCAACGCGCAGAATATGTGTGGAGAATAAATGCCTT
CACCAAAAAGCTGAAGAGAATTCAGTCCAATAGCTACGATGACCCAAGTA
GATCAGAACCTTTTGTAACTGGTCCAAATGGATATCGTTTGTCCATGTGG
GCTTACTTAAATGGGCGAGGAAAAGGGTTCGATAAATGTCTTGCGGTGTA
TGTCCGAATTATGGCTGGTGAATATGACCCTGTGCTACCGTGGCCCATCA
AACCGTGTTATACTTTCCAATTGATCAGCCAAGCGCAAGATCCCAATAAG
CGATTAGATCTTGTCCGCGTAAGAGACTTGTCAGTGAAACACAGCGGTAT
TTCGCGACCTCAGAAAGACGATAAATCCATTATTGTTGGGTTCGATGATT
TTATTGTTCACGAGGACTTGGAGAAGAAAGAATATTTAGCGGACGATTCT
TTGTTCATCAAATGTATCGTTGAAATTTAAATGGAGAAAGTTTTATCAAA
GAAAAGTAATTACTTTGTATTGAATAATGACGAGGTTGGTGGTCATCCAA
TCATTCGTGAGATGGCagatgaaaagaagaaattgtTGGCTAGCCCTGAT
GATGACTTGGGTTACAAGAACAAAGGGATCATATCCAACGATGAGGAGCA
CGACCTCTCTTTTGCTCTGAAGATCATTAAAGAGCAAGGTGACCTCCTCA
AGACCATGCAAAATGATATGGACGAGCAACGAAGTTTGAACGCCAAGTTG
TCAAGTAAACTGGAAGATCTGACGCGAGATATTCAAATACTCAACGATTC
ACATTCCAAAGAAACGATCAAGAAAGATGAGCAAATTGATAAATTGAAAA
ACACTCTGGAAGCTAAGACGGAATTCCAAGCTTCCTTGATTGATGAGTTG
CGATATCAAATACAAAGCATGAGAAATAAAATGGACTCCAAACGGCTTAC
TGAGAATGGTACATCTTCAGGGAAAGCTATCGTCAAACATAACGAAATTC
TTTCACCGACTAAGAAGTTATTGAGGAATAATTCTGAGGACAGTATCTCG
AGTAATGGATCAAATCCGTGTCTTCTATCGAGAACCATCGGTCCTCAACG
CGCAGAATATGTGTGGAGAATAAATGCCTTCACCAAAAAGCTGAAGAGAA
TTCAGTCCAATAGCTACGATGACCCAAGTAGATCAGAACCTTTTGTAACT
GGTCCAAATGGATATCGTTTGTCCATGTGGGCTTACTTAAATGGGCGAGG
AAAAGGGTTCGATAAATGTCTTGCGGTGTATGTCCGAATTATGGCTGGTG
AATATGACCCTGTGCTACCGTGGCCCATCAAACCGTGTTATACTTTCCAA
TTGATCAGCCAAGCGCAAGATCCCAATAAGCGATTAGATCTTGTCCGCGT
AAGAGACTTGTCAGTGAAACACAGCGGTATTTCGCGACCTCAGAAAGACG
ATAAATCCATTATTGTTGGGTTCGATGATTTTATTGTTCACGAGGACTTG
GAGAAGAAAGAATATTTAGCGGACGATTCTTTGTTCATCAAATGTATCGT
TGAAATTTAAATGGAGAAAGTTTTATCAAAGAAAAGTAATTACTTTGTAT
TGAATAATGACGAGGTTGGTGGTCATCCAATCATTCGTGAGATGGCagat
gaaaagaagaaattgtTGGCTAGCCCTGATGATGACTTGGGTTACAAGAA
CAAAGGGATCATATCCAACGATGAGGAGCACGACCTCTCTTTTGCTCTGA
AGATCATTAAAGAGCAAGGTGACCTCCTCAAGACCATGCAAAATGATATG
GACGAGCAACGAAGTTTGAACGCCAAGTTGTCAAGTAAACTGGAAGATCT
GACGCGAGATATTCAAATACTCAACGATTCACATTCCAAAGAAACGATCA
AGAAAGATGAGCAAATTGATAAATTGAAAAACACTCTGGAAGCTAAGACG
GAATTCCAAGCTTCCTTGATTGATGAGTTGCGATATCAAATACAAAGCAT
GAGAAATAAAATGGACTCCAAACGGCTTACTGAGAATGGTACATCTTCAG
GGAAAGCTATCGTCAAACATAACGAAATTCTTTCACCGACTAAGAAGTTA
TTGAGGAATAATTCTGAGGACAGTATCTCGAGTAATGGATCAAATCCGTG
TCTTCTATCGAGAACCATCGGTCCTCAACGCGCAGAATATGTGTGGAGAA
TAAATGCCTTCACCAAAAAGCTGAAGAGAATTCAGTCCAATAGCTACGAT
GACCCAAGTAGATCAGAACCTTTTGTAACTGGTCCAAATGGATATCGTTT
GTCCATGTGGGCTTACTTAAATGGGCGAGGAAAAGGGTTCGATAAATGTC
TTGCGGTGTATGTCCGAATTATGGCTGGTGAATATGACCCTGTGCTACCG
TGGCCCATCAAACCGTGTTATACTTTCCAATTGATCAGCCAAGCGCAAGA
TCCCAATAAGCGATTAGATCTTGTCCGCGTAAGAGACTTGTCAGTGAAAC
ACAGCGGTATTTCGCGACCTCAGAAAGACGATAAATCCATTATTGTTGGG
TTCGATGATTTTATTGTTCACGAGGACTTGGAGAAGAAAGAATATTTAGC
GGACGATTCTTTGTTCATCAAATGTATCGTTGAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008098XLOC_008098Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014474-proteinTCONS_00014474-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014474-exon-sc0000188-1491911889:34715..35014TCONS_00014474-exon-sc0000188-1491911889:34715..35014Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1510915933:34715..35014TCONS_00014474-exon-sc0000188-1510915933:34715..35014Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1575043694:34715..35014TCONS_00014474-exon-sc0000188-1575043694:34715..35014Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1491911889:35422..35496TCONS_00014474-exon-sc0000188-1491911889:35422..35496Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1510915933:35422..35496TCONS_00014474-exon-sc0000188-1510915933:35422..35496Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1575043694:35422..35496TCONS_00014474-exon-sc0000188-1575043694:35422..35496Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1491911889:35791..37008TCONS_00014474-exon-sc0000188-1491911889:35791..37008Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1510915933:35791..37008TCONS_00014474-exon-sc0000188-1510915933:35791..37008Clytia hemisphaericaexon
TCONS_00014474-exon-sc0000188-1575043694:35791..37008TCONS_00014474-exon-sc0000188-1575043694:35791..37008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188supercontigsc0000188:34715..37008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.36202	5.24987	6.25595	4.02665	52.5547	44.162	21.3144	28.3525	7.0887	6.98135	4.56662	8.42473	5.28836	5.08343	3.12248	2.74669	7.31316	4.92276	5.5695	5.10897	7.69715	5.09563	10.1707	9.24621	12.3329	11.7044	8.85702	5.53218	6.45557	7.89252
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00014474 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.902e-16
Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = 1 
Query:  877 VWRINAFTKKLKRIQSNSYDDPSRSEPFVTGPNGYRLSMWAYLNGRGKGFDKCLAVYVRIMAGEYDPVLPWPIKPCYTFQLISQAQDPNKRLDLVRVRDLS-----------VKHSGISRPQKDDKSIIVGFDDFIVHEDLEKKEYLADDSLFIKCIVEI 1323
            +W+I ++ ++L+  ++    +   S  F T   GY+L + A+LNG G G    L++Y+R++ G +D +L WP     TF L+ Q+ DP     L + + ++            +  G  R   D+ S+  G+  FI H+D+ K+ Y+ DD++FI+  VE+
Sbjct:  311 IWKIGSYGRRLQEAKAKPNLE-CFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQS-DPG----LAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVEL 464
The following BLAST results are available for this feature:
BLAST of TCONS_00014474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF41.902e-1629.38TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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