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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014464 ID=TCONS_00014464|Name=TCONS_00014464|organism=Clytia hemisphaerica|type=transcript|length=2351bp
TGAagagtaaacaaaaaaactgTATTTTTCTCAATGCAAATTGgaattat
tgaaaagaaggGGGATATGATGTTTAAAGTTCGGTTAAATAAACGGAGAA
ATAGTCAGCCTGTTCTAGTATTAAATCAACATTGACTCCTTTTTGTTGAT
ACAAGAGCATTTTATTCAttgacaaattattttcttttgctTGACTGTTT
GTatacaaaaaaagttattttgactACAGGACAACACTTTTGAGGGACGG
AGAAGTCATGGCAAGATGGTATTTACTGGTTAATACAGTACTGGTATGTT
GTTTCTTGGTTGATGCTGCCAGTATCAAAAACCGACAGGAATCAACCATC
AATAATAACATTGAGCAAGAGACGAACCGAGTTGACACATTTCTCACAAG
ACTGACATCTGCCTTAGCTGAACGCGTTCGTGATAAGTTGGATAAGCATC
ATGATTTATCGCAAACTGAAGTCAAATTATTACGGTTTTTTGTGACACGC
CTACAGAAGGGATCTGGTGATCAACCACAAGAGAAACGAAAATCAAAGAA
GGAAATTCTTTCTGACGATGTTGACTTAGAGAGCTTGTTACATCAAGGAA
CAGACTTACCACAAACTATCCCAGTAgaggaaaacaaagaaaatacagCT
ATTCAAACAAGTAAATCTCCAAAGCTTCCAAAAACATTTGCTATAAAGAA
GCCGTCTTCAAAGGAGACTGACGCCAAAGAAAATCAATCTTTCGACGAAT
TCATCATTAAATTATCAACCGCTTTAGCGCAACGTGTCAAAGACAAATTA
TCAAAAGACCACGCTTTAACTCAAAATGAAGTCCAGCTACTTGAGTTTTT
CGTTAAACAAATCAGAGAAAAGAAATCGTTATCAGGTCGCGAGCAAGAGT
CACAAGACTCTGAAGGGCAATCAAATCATGAATCCCCACAAACTACGACA
ACAGAGAAACCGAAAACTTTCATGAATAATATCGATTTAGAGATTAATAA
TTTGATTCAAGAGTTGACCGAGGATAACCACACCATATCCTATCATCCGA
ACGAAATTGCCATAGATCCTACTGATCTTATTCCAAGGGATTTACATTCC
AAAGAATTGAACAATGCTGCTATTAAAGACaataaacttgaaaatattga
CTCAAAACAACAAGATAAAAGGGCAGTTACCACAGATGATTctactaaaa
atattttaagagacTTTAAAAATACGTTAAATTCAGATGCTTCAACCACG
AAGGATCTTGATGGTGTTGATGATAAAATTCTGGATGTCGTTAAGAATTA
TGTCGACTCGATGAAGCAAATCAAAAAGAATATTGATTCCGTTTCTGAAG
ATAATGAAAACAAGATGCTAAACGATGTTTTGTCTTTTGTTaccaagaag
aagaaaatatcCAGAGACCAAAGGGAGGTGTTGAGTCCAGAAGAAGCTCA
GAAGCAAAGACAGTTTGCTCAAAAGTTTTGGACAGATCTAGGAATGAATA
CACAAGCTGATGAACTGACCGATAAGTTGGAGAATGTGGTCAAGAAAGCT
GTTCATTGTGTTGATCGGCCTGTCAAAGATTGTAGGAGAGTATGCATACA
TGGTGATCCAAGCAATTGCCAGAATGTCTGTGTCAATTCAACTGAAATGG
ACTGTATTAATATTTGATCCCTTTAGTGCTGATGATCATAAAGGGGCGCG
AGAGGCGTCATAATATGAACCACCCTCCAATTGATAAGAAAGTGTGAAAT
AGTAATAAACACTACAGGGACAATTGATATCAATGTTTTTTAGAGTAGGT
AAGAATGAAAAGATAGAAAATTAATGGGAACAATAGAGTCTAAACATGAA
GACATACAGTATTACGTTGAATCTctatttaatgaaaaaaaaatagagaa
agTTGTTTGTGGTTTTTCATGACATGTTACTGTGTTTATATGACAATTCA
TTCATGAGTGTATGTTAAACACCTTAATGCAATAGTATTGCGATAAGTGG
GTATACAATGAACAATCTTGTGGTTTGATAATACAAGCATCATGGACACT
TTCAATTATCATATACTTGAAAATAAGAATGCTGAAATCCTTTATTAATA
TATGCGCCTTACATAAGTAAGGACATTACCAATTCCAATGTATTCTAATA
CCTCTTCTCTTtgaactaaaaatttgaatgttaTGATTTTTAATAGTTCA
AGAAGTTCTTCACTTAGTTGTGAATTAGTATCTGTAATCTCCATTTTGAC
AGGTTTTCTATAACAGATTGAAAAATGGGTCTTTCATAAAAGTAGCAATG
ACaacaatttgttttgtttttatgaaaaaagaagTCTTCCTACAAAAGAA
T Run BLAST on NCBI protein sequence of TCONS_00014464-protein >TCONS_00014464-protein ID=TCONS_00014464-protein|Name=TCONS_00014464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MARWYLLVNTVLVCCFLVDAASIKNRQESTINNNIEQETNRVDTFLTRLT
SALAERVRDKLDKHHDLSQTEVKLLRFFVTRLQKGSGDQPQEKRKSKKEI
LSDDVDLESLLHQGTDLPQTIPVEENKENTAIQTSKSPKLPKTFAIKKPS
SKETDAKENQSFDEFIIKLSTALAQRVKDKLSKDHALTQNEVQLLEFFVK
QIREKKSLSGREQESQDSEGQSNHESPQTTTTEKPKTFMNNIDLEINNLI
QELTEDNHTISYHPNEIAIDPTDLIPRDLHSKELNNAAIKDNKLENIDSK
QQDKRAVTTDDSTKNILRDFKNTLNSDASTTKDLDGVDDKILDVVKNYVD
SMKQIKKNIDSVSEDNENKMLNDVLSFVTKKKKISRDQREVLSPEEAQKQ
RQFAQKFWTDLGMNTQADELTDKLENVVKKAVHCVDRPVKDCRRVCIHGD
PSNCQNVCVNSTEMDCINI Run BLAST on NCBI transcript from alignment at sc0000187:392309..394659 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014464 ID=TCONS_00014464|Name=TCONS_00014464|organism=Clytia hemisphaerica|type=transcript|length=2351bp|location=Sequence derived from alignment at sc0000187:392309..394659 (Clytia hemisphaerica)
ATTCTTTTGTAGGAAGActtcttttttcataaaaacaaaacaaattgttG
TCATTGCTACTTTTATGAAAGACCCATTTTTCAATCTGTTATAGAAAACC
TGTCAAAATGGAGATTACAGATACTAATTCACAACTAAGTGAAGAACTTC
TTGAACTATTAAAAATCAtaacattcaaatttttagttcaAAGAGAAGAG
GTATTAGAATACATTGGAATTGGTAATGTCCTTACTTATGTAAGGCGCAT
ATATTAATAAAGGATTTCAGCATTCTTATTTTCAAGTATATGATAATTGA
AAGTGTCCATGATGCTTGTATTATCAAACCACAAGATTGTTCATTGTATA
CCCACTTATCGCAATACTATTGCATTAAGGTGTTTAACATACACTCATGA
ATGAATTGTCATATAAACACAGTAACATGTCATGAAAAACCACAAACAAc
tttctctatttttttttcattaaatagAGATTCAACGTAATACTGTATGT
CTTCATGTTTAGACTCTATTGTTCCCATTAATTTTCTATCTTTTCATTCT
TACCTACTCTAAAAAACATTGATATCAATTGTCCCTGTAGTGTTTATTAC
TATTTCACACTTTCTTATCAATTGGAGGGTGGTTCATATTATGACGCCTC
TCGCGCCCCTTTATGATCATCAGCACTAAAGGGATCAAATATTAATACAG
TCCATTTCAGTTGAATTGACACAGACATTCTGGCAATTGCTTGGATCACC
ATGTATGCATACTCTCCTACAATCTTTGACAGGCCGATCAACACAATGAA
CAGCTTTCTTGACCACATTCTCCAACTTATCGGTCAGTTCATCAGCTTGT
GTATTCATTCCTAGATCTGTCCAAAACTTTTGAGCAAACTGTCTTTGCTT
CTGAGCTTCTTCTGGACTCAACACCTCCCTTTGGTCTCTGgatattttct
tcttcttggtAACAAAAGACAAAACATCGTTTAGCATCTTGTTTTCATTA
TCTTCAGAAACGGAATCAATATTCTTTTTGATTTGCTTCATCGAGTCGAC
ATAATTCTTAACGACATCCAGAATTTTATCATCAACACCATCAAGATCCT
TCGTGGTTGAAGCATCTGAATTTAACGTATTTTTAAAgtctcttaaaata
tttttagtagAATCATCTGTGGTAACTGCCCTTTTATCTTGTTGTTTTGA
GtcaatattttcaagtttattGTCTTTAATAGCAGCATTGTTCAATTCTT
TGGAATGTAAATCCCTTGGAATAAGATCAGTAGGATCTATGGCAATTTCG
TTCGGATGATAGGATATGGTGTGGTTATCCTCGGTCAACTCTTGAATCAA
ATTATTAATCTCTAAATCGATATTATTCATGAAAGTTTTCGGTTTCTCTG
TTGTCGTAGTTTGTGGGGATTCATGATTTGATTGCCCTTCAGAGTCTTGT
GACTCTTGCTCGCGACCTGATAACGATTTCTTTTCTCTGATTTGTTTAAC
GAAAAACTCAAGTAGCTGGACTTCATTTTGAGTTAAAGCGTGGTCTTTTG
ATAATTTGTCTTTGACACGTTGCGCTAAAGCGGTTGATAATTTAATGATG
AATTCGTCGAAAGATTGATTTTCTTTGGCGTCAGTCTCCTTTGAAGACGG
CTTCTTTATAGCAAATGTTTTTGGAAGCTTTGGAGATTTACTTGTTTGAA
TAGctgtattttctttgttttcctcTACTGGGATAGTTTGTGGTAAGTCT
GTTCCTTGATGTAACAAGCTCTCTAAGTCAACATCGTCAGAAAGAATTTC
CTTCTTTGATTTTCGTTTCTCTTGTGGTTGATCACCAGATCCCTTCTGTA
GGCGTGTCACAAAAAACCGTAATAATTTGACTTCAGTTTGCGATAAATCA
TGATGCTTATCCAACTTATCACGAACGCGTTCAGCTAAGGCAGATGTCAG
TCTTGTGAGAAATGTGTCAACTCGGTTCGTCTCTTGCTCAATGTTATTAT
TGATGGTTGATTCCTGTCGGTTTTTGATACTGGCAGCATCAACCAAGAAA
CAACATACCAGTACTGTATTAACCAGTAAATACCATCTTGCCATGACTTC
TCCGTCCCTCAAAAGTGTTGTCCTGTagtcaaaataactttttttgtatA
CAAACAGTCAagcaaaagaaaataatttgtcaaTGAATAAAATGCTCTTG
TATCAACAAAAAGGAGTCAATGTTGATTTAATACTAGAACAGGCTGACTA
TTTCTCCGTTTATTTAACCGAACTTTAAACATCATATCCCccttcttttc
aataattcCAATTTGCATTGAGAAAAATAcagtttttttgtttactctTC
A Coding sequence (CDS) from alignment at sc0000187:392309..394659 >TCONS_00014464 ID=TCONS_00014464|Name=TCONS_00014464|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at sc0000187:392309..394659 (Clytia hemisphaerica)
TCAAATATTAATACAGTCCATTTCAGTTGAATTGACACAGACATTCTGGC
AATTGCTTGGATCACCATGTATGCATACTCTCCTACAATCTTTGACAGGC
CGATCAACACAATGAACAGCTTTCTTGACCACATTCTCCAACTTATCGGT
CAGTTCATCAGCTTGTGTATTCATTCCTAGATCTGTCCAAAACTTTTGAG
CAAACTGTCTTTGCTTCTGAGCTTCTTCTGGACTCAACACCTCCCTTTGG
TCTCTGgatattttcttcttcttggtAACAAAAGACAAAACATCGTTTAG
CATCTTGTTTTCATTATCTTCAGAAACGGAATCAATATTCTTTTTGATTT
GCTTCATCGAGTCGACATAATTCTTAACGACATCCAGAATTTTATCATCA
ACACCATCAAGATCCTTCGTGGTTGAAGCATCTGAATTTAACGTATTTTT
AAAgtctcttaaaatatttttagtagAATCATCTGTGGTAACTGCCCTTT
TATCTTGTTGTTTTGAGtcaatattttcaagtttattGTCTTTAATAGCA
GCATTGTTCAATTCTTTGGAATGTAAATCCCTTGGAATAAGATCAGTAGG
ATCTATGGCAATTTCGTTCGGATGATAGGATATGGTGTGGTTATCCTCGG
TCAACTCTTGAATCAAATTATTAATCTCTAAATCGATATTATTCATGAAA
GTTTTCGGTTTCTCTGTTGTCGTAGTTTGTGGGGATTCATGATTTGATTG
CCCTTCAGAGTCTTGTGACTCTTGCTCGCGACCTGATAACGATTTCTTTT
CTCTGATTTGTTTAACGAAAAACTCAAGTAGCTGGACTTCATTTTGAGTT
AAAGCGTGGTCTTTTGATAATTTGTCTTTGACACGTTGCGCTAAAGCGGT
TGATAATTTAATGATGAATTCGTCGAAAGATTGATTTTCTTTGGCGTCAG
TCTCCTTTGAAGACGGCTTCTTTATAGCAAATGTTTTTGGAAGCTTTGGA
GATTTACTTGTTTGAATAGctgtattttctttgttttcctcTACTGGGAT
AGTTTGTGGTAAGTCTGTTCCTTGATGTAACAAGCTCTCTAAGTCAACAT
CGTCAGAAAGAATTTCCTTCTTTGATTTTCGTTTCTCTTGTGGTTGATCA
CCAGATCCCTTCTGTAGGCGTGTCACAAAAAACCGTAATAATTTGACTTC
AGTTTGCGATAAATCATGATGCTTATCCAACTTATCACGAACGCGTTCAG
CTAAGGCAGATGTCAGTCTTGTGAGAAATGTGTCAACTCGGTTCGTCTCT
TGCTCAATGTTATTATTGATGGTTGATTCCTGTCGGTTTTTGATACTGGC
AGCATCAACCAAGAAACAACATACCAGTACTGTATTAACCAGTAAATACC
ATCTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014464-exon-sc0000187-1491911889:392309..394659 | TCONS_00014464-exon-sc0000187-1491911889:392309..394659 | Clytia hemisphaerica | exon |
| TCONS_00014464-exon-sc0000187-1510915933:392309..394659 | TCONS_00014464-exon-sc0000187-1510915933:392309..394659 | Clytia hemisphaerica | exon |
| TCONS_00014464-exon-sc0000187-1575043694:392309..394659 | TCONS_00014464-exon-sc0000187-1575043694:392309..394659 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:392309..394659 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011991 | WHTH_DNA-bd_dom |
Blast
The following BLAST results are available for this feature:
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