TCONS_00014455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014455
Unique NameTCONS_00014455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014455 ID=TCONS_00014455|Name=TCONS_00014455|organism=Clytia hemisphaerica|type=transcript|length=1768bp
taacaaattgcttttatataagaatttaaaaaaatacaaatacaaatgaa
aaattaaatagatACACTAAAAGTAAGCAATCTTAATGGAAACACTGTTA
CACTCAAACaacaataaatattttgacCTCATCCATCATGCTAAAAATTG
GGAAAAGTGTCTCTGAGGACTTTCGAATTACTTCTACCTTGACTGAGTGA
TGCCACGTTCAAGCGTTCAAGAAGAatactaaatgaaaaaattagTAGAT
GAAAGTTGACAATTTACGAGGgaaattttatttgttaaaaaaaattctat
acaaaaaaaatcaaaaatattcagATATTAAAATtacaatcaaatttaat
atcCCCATGTAGCTACCAAGTAAAACAATGGATCCAGAATGAGACATTTC
CAAGgtgttaaaaattttattgatcAAGCCAGTGAAAACATTTGCCAACA
TAAAATAAAGCAATTGGTGGCGTGAAATACTGTGAAACAATGGTGTCATA
AGACGACCATATTTGTACACACCATCATACTTCGTATTTAAAGCTGCTAT
TGTTTTTATGGTTATTTGAAGAAGCAATGTACATGCAAGCAAAAATGAGT
TTATGGCGACAATGAAGAAATAATACGAGAGGTTTGCCATTTGTCGTGAG
ATATCGGTGATGAGATATCGACTCAATTGAAGAGTGCCAATCATAACAAA
AAACCAGACAAACAACCATTTGACTTTTGATTGTAAGGTCAAATGCTGTT
TAAAAAGTTGAGCTCCGTGGTATATGCCAATAAAATAAAGACTCAGGAAT
CCAATCAAAGAGAAAATGCCTTCACGATTTGCGTCTACAAAAGTCGAACG
TGCATTTAATCCATTAGCACCATACACCAAGAAGGTTTCAAGACCAAAGT
TGGATAATAGAAACTGATATGTTAAAATAAGACATAATGATATTACCAAA
TAACCAAGCTGATTACATAAagattggctgaaatattgaATAATGCTAGC
TATGATGCGTACACAGGCTAATGTGAAGAAGAAATTCCAATATAACCCAT
ATTCAGATACATGCTCTTGGTAATTTGTCAATTTAACGAGAATCAACCTA
ATACAGCCAAGTAGAATGATAATAAAGGATGATTGAACAGTTTTCAAGAG
GTCTTTAAATGTCACTGTTTTGATACCACGAGCTGCAGGTGATGTCAAAC
CCATACTCATAATAATAATTCCAACACCTAAGTCCATATTTCCAAGACCA
AAGGATTCCGATTTAGCAAAACGGCGTGGAAATATGTGGAAATCGACAGC
TAAGATAGTGAATGCTGTTAGTAGTTGAATGATAGCTTTGTATACTGAGA
TGTATGATGTGTCATCTCCAGAGATGGTTGTGGTGATATGTCTCAAGAAT
TGATGTAAGGGAACACGACTCTTCAGCATTACCACcaaaagaaataaaca
aaataaacacaAATTCAATGCATTTAAATAATCAGACCAAATGGTCAAAC
CAAGTAGGACAGGTAACACTAAAAAGATTTGctcattgatgaaaaataat
atttgtgtTCGCCTTCCACCAGTGTGTATCAAAAAGGAAACCGCATGTAC
ACAAGCAGATAAAAGTGGGAGAAGAACTGTTAAAATGACTTCACTGATAG
TAGCATTTGGTGTGTCTGTCACAAAATCCACTTTTGGATCTGGagttaat
atttttggaaatactTGAACTTTCACAGTTtcatttgacatttttatttt
ttatttctagtaATTCCC
Run BLAST on NCBI

protein sequence of TCONS_00014455-protein

>TCONS_00014455-protein ID=TCONS_00014455-protein|Name=TCONS_00014455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MSNETVKVQVFPKILTPDPKVDFVTDTPNATISEVILTVLLPLLSACVHA
VSFLIHTGGRRTQILFFINEQIFLVLPVLLGLTIWSDYLNALNLCLFCLF
LLVVMLKSRVPLHQFLRHITTTISGDDTSYISVYKAIIQLLTAFTILAVD
FHIFPRRFAKSESFGLGNMDLGVGIIIMSMGLTSPAARGIKTVTFKDLLK
TVQSSFIIILLGCIRLILVKLTNYQEHVSEYGLYWNFFFTLACVRIIASI
IQYFSQSLCNQLGYLVISLCLILTYQFLLSNFGLETFLVYGANGLNARST
FVDANREGIFSLIGFLSLYFIGIYHGAQLFKQHLTLQSKVKWLFVWFFVM
IGTLQLSRYLITDISRQMANLSYYFFIVAINSFLLACTLLLQITIKTIAA
LNTKYDGVYKYGRLMTPLFHSISRHQLLYFMLANVFTGLINKIFNTLEMS
HSGSIVLLGSYMGILNLIVILISEYF
Run BLAST on NCBI

transcript from alignment at sc0000187:164127..165894

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014455 ID=TCONS_00014455|Name=TCONS_00014455|organism=Clytia hemisphaerica|type=transcript|length=1768bp|location=Sequence derived from alignment at sc0000187:164127..165894 (Clytia hemisphaerica)
GGGAATtactagaaataaaaaataaaaatgtcaaatgaAACTGTGAAAGT
TCAagtatttccaaaaatattaactCCAGATCCAAAAGTGGATTTTGTGA
CAGACACACCAAATGCTACTATCAGTGAAGTCATTTTAACAGTTCTTCTC
CCACTTTTATCTGCTTGTGTACATGCGGTTTCCTTTTTGATACACACTGG
TGGAAGGCGAacacaaatattatttttcatcaatgagCAAATCTTTTTAG
TGTTACCTGTCCTACTTGGTTTGACCATTTGGTCTGATTATTTAAATGCA
TTGAATTtgtgtttattttgtttatttcttttgGTGGTAATGCTGAAGAG
TCGTGTTCCCTTACATCAATTCTTGAGACATATCACCACAACCATCTCTG
GAGATGACACATCATACATCTCAGTATACAAAGCTATCATTCAACTACTA
ACAGCATTCACTATCTTAGCTGTCGATTTCCACATATTTCCACGCCGTTT
TGCTAAATCGGAATCCTTTGGTCTTGGAAATATGGACTTAGGTGTTGGAA
TTATTATTATGAGTATGGGTTTGACATCACCTGCAGCTCGTGGTATCAAA
ACAGTGACATTTAAAGACCTCTTGAAAACTGTTCAATCATCCTTTATTAT
CATTCTACTTGGCTGTATTAGGTTGATTCTCGTTAAATTGACAAATTACC
AAGAGCATGTATCTGAATATGGGTTATATTGGAATTTCTTCTTCACATTA
GCCTGTGTACGCATCATAGCTAGCATTATtcaatatttcagccaatctTT
ATGTAATCAGCTTGGTTATTTGGTAATATCATTATGTCTTATTTTAACAT
ATCAGTTTCTATTATCCAACTTTGGTCTTGAAACCTTCTTGGTGTATGGT
GCTAATGGATTAAATGCACGTTCGACTTTTGTAGACGCAAATCGTGAAGG
CATTTTCTCTTTGATTGGATTCCTGAGTCTTTATTTTATTGGCATATACC
ACGGAGCTCAACTTTTTAAACAGCATTTGACCTTACAATCAAAAGTCAAA
TGGTTGTTTGTCTGGTTTTTTGTTATGATTGGCACTCTTCAATTGAGTCG
ATATCTCATCACCGATATCTCACGACAAATGGCAAACCTCTCGTATTATT
TCTTCATTGTCGCCATAAACTCATTTTTGCTTGCATGTACATTGCTTCTT
CAAATAACCATAAAAACAATAGCAGCTTTAAATACGAAGTATGATGGTGT
GTACAAATATGGTCGTCTTATGACACCATTGTTTCACAGTATTTCACGCC
ACCAATTGCTTTATTTTATGTTGGCAAATGTTTTCACTGGCTTgatcaat
aaaatttttaacacCTTGGAAATGTCTCATTCTGGATCCATTGTTTTACT
TGGTAGCTACATGGGgatattaaatttgattgtaATTTTAATATctgaat
atttttgattttttttgtatagaattttttttaacaaataaaatttcCCT
CGTAAATTGTCAACTTTCATCTActaattttttcatttagtatTCTTCTT
GAACGCTTGAACGTGGCATCACTCAGTCAAGGTAGAAGTAATTCGAAAGT
CCTCAGAGACACTTTTCCCAATTTTTAGCATGATGGATGAGgtcaaaata
tttattgttGTTTGAGTGTAACAGTGTTTCCATTAAGATTGCTTACTTTT
AGTGTatctatttaatttttcatttgtatttgtatttttttaaattctta
tataaaagcaatttgtta

Coding sequence (CDS) from alignment at sc0000187:164127..165894

>TCONS_00014455 ID=TCONS_00014455|Name=TCONS_00014455|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at sc0000187:164127..165894 (Clytia hemisphaerica)
atgtcaaatgaAACTGTGAAAGTTCAagtatttccaaaaatattaactCC
AGATCCAAAAGTGGATTTTGTGACAGACACACCAAATGCTACTATCAGTG
AAGTCATTTTAACAGTTCTTCTCCCACTTTTATCTGCTTGTGTACATGCG
GTTTCCTTTTTGATACACACTGGTGGAAGGCGAacacaaatattattttt
catcaatgagCAAATCTTTTTAGTGTTACCTGTCCTACTTGGTTTGACCA
TTTGGTCTGATTATTTAAATGCATTGAATTtgtgtttattttgtttattt
cttttgGTGGTAATGCTGAAGAGTCGTGTTCCCTTACATCAATTCTTGAG
ACATATCACCACAACCATCTCTGGAGATGACACATCATACATCTCAGTAT
ACAAAGCTATCATTCAACTACTAACAGCATTCACTATCTTAGCTGTCGAT
TTCCACATATTTCCACGCCGTTTTGCTAAATCGGAATCCTTTGGTCTTGG
AAATATGGACTTAGGTGTTGGAATTATTATTATGAGTATGGGTTTGACAT
CACCTGCAGCTCGTGGTATCAAAACAGTGACATTTAAAGACCTCTTGAAA
ACTGTTCAATCATCCTTTATTATCATTCTACTTGGCTGTATTAGGTTGAT
TCTCGTTAAATTGACAAATTACCAAGAGCATGTATCTGAATATGGGTTAT
ATTGGAATTTCTTCTTCACATTAGCCTGTGTACGCATCATAGCTAGCATT
ATtcaatatttcagccaatctTTATGTAATCAGCTTGGTTATTTGGTAAT
ATCATTATGTCTTATTTTAACATATCAGTTTCTATTATCCAACTTTGGTC
TTGAAACCTTCTTGGTGTATGGTGCTAATGGATTAAATGCACGTTCGACT
TTTGTAGACGCAAATCGTGAAGGCATTTTCTCTTTGATTGGATTCCTGAG
TCTTTATTTTATTGGCATATACCACGGAGCTCAACTTTTTAAACAGCATT
TGACCTTACAATCAAAAGTCAAATGGTTGTTTGTCTGGTTTTTTGTTATG
ATTGGCACTCTTCAATTGAGTCGATATCTCATCACCGATATCTCACGACA
AATGGCAAACCTCTCGTATTATTTCTTCATTGTCGCCATAAACTCATTTT
TGCTTGCATGTACATTGCTTCTTCAAATAACCATAAAAACAATAGCAGCT
TTAAATACGAAGTATGATGGTGTGTACAAATATGGTCGTCTTATGACACC
ATTGTTTCACAGTATTTCACGCCACCAATTGCTTTATTTTATGTTGGCAA
ATGTTTTCACTGGCTTgatcaataaaatttttaacacCTTGGAAATGTCT
CATTCTGGATCCATTGTTTTACTTGGTAGCTACATGGGgatattaaattt
gattgtaATTTTAATATctgaatatttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008081XLOC_008081Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014455-proteinTCONS_00014455-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014455-exon-sc0000187-1491911889:164127..165894TCONS_00014455-exon-sc0000187-1491911889:164127..165894Clytia hemisphaericaexon
TCONS_00014455-exon-sc0000187-1510915933:164127..165894TCONS_00014455-exon-sc0000187-1510915933:164127..165894Clytia hemisphaericaexon
TCONS_00014455-exon-sc0000187-1575043694:164127..165894TCONS_00014455-exon-sc0000187-1575043694:164127..165894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:164127..165894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.0714	20.5049	23.2412	30.5525	10.4649	6.54767	8.89424	8.38146	4.14216	4.5369	4.44973	3.39491	4.58584	4.51096	5.56939	5.83814	5.82544	6.8814	2.05623	3.59459	5.34661	5.0226	18.8387	18.2183	4.59338	5.62589	8.70591	6.82686	16.1905	15.0545
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009447GWT1
Vocabulary: Biological Process
TermDefinition
GO:0006506GPI anchor biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016746transferase activity, transferring acyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006506 GPI anchor biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016746 transferase activity, transferring acyl groups
Blast
[Close]
BLAST of TCONS_00014455 vs. Swiss-Prot (Human)
Match: PIGW (Phosphatidylinositol-glycan biosynthesis class W protein OS=Homo sapiens GN=PIGW PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 6.431e-40
Identity = 135/496 (27.22%), Postives = 240/496 (48.39%), Query Frame = -1 
Query:  356 KVDFVTDTPNATISEVILTVLLPLLSACVHAVSFLI--------HTGGRRTQILFFINEQIFLVLPVLLGLTIWSDYXXXXXXXXXX-------XXXXXXXLKSRVPLHQFL-RHITTTISGDDTSYISVYKAIIQLLTAFTILAVDFHIFPRRFAKSESFGLGNMDLGVGIIIMSMGLTSPAARGIKTVTFKDL---LKTVQSSFXXXXXXXXXXXLVKLTNYQEHVSEYGLYWNFFFTLACVRIIAS---IIQYFSQSLCNQLGYLVISLCLILTYQFLLSNFGLETFLVYGANGLNARSTFVDANREGIFSLIGFLSLYFIGIYHGAQLFKQHLTLQSKVKWLFVWFFVMIGTLQL--SRYL----ITDISRQMANLSYYFFIVA----------------------INSFLLACTLLLQITIKTIAALNTKYDGVYKYGRLMTP---LFHSISRHQLLYFMLANVFTGLINKIFNTLEMSHSGSIVLLGSYM 1684
            K  FV++    T+ E+   +  P  + C+    FLI         +   +T+   F+ + + L++P++  LTIW+ ++    L +                  +R+P  + L + +  ++  +    IS ++ I    TA  ILAVDF +FPRRFAK+E +G G MD GVG  +    +     R  K +    L     ++ S + ++ LG  RL ++K   YQEH++EYG++WNFFFT+  V++I     II   ++S        +I+L + + YQ  L    L+  ++YG +G   R   ++ANREGI S +G+++++  G+  G  + K    ++  +K   V  F+++  + L  S Y+    +  +SR+MANL++  +IVA                      I   L+ C+  L   I++        + +      M P   L  +++R QL++F+L+N+ TGLIN + +TL  S   ++ ++  YM
Sbjct:    7 KEAFVSNLNGTTVLEITQGLCFP--AFCILCRGFLIIFSQYLCSFSPTWKTR---FLTDFVVLIVPMVATLTIWASFILLELLGVIIFGAGLLYQIYRRRTCYARLPFLKILEKFLNISLESEYNPAISCFRVITSAFTAIAILAVDFPLFPRRFAKTELYGTGAMDFGVGGFVFGSAMVCLEVRRRKYMEGSKLHYFTNSLYSVWPLVFLGIGRLAIIKSIGYQEHLTEYGVHWNFFFTIIVVKLITPLLLIIFPLNKS-------WIIALGITVLYQLALDFTSLKRLILYGTDGSGTRVGLLNANREGIISTLGYVAIHMAGVQTGLYMHKNRSHIKDLIK---VACFLLLAAISLFISLYVVQVNVEAVSRRMANLAFCIWIVASSLILLSSLLLGDIILSFAKFLIKGALVPCSWKL---IQSPVTNKKHSESLVPEAERMEPSLCLITALNRKQLIFFLLSNITTGLINLMVDTLHSSTLWALFVVNLYM 484
The following BLAST results are available for this feature:
BLAST of TCONS_00014455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIGW6.431e-4027.22Phosphatidylinositol-glycan biosynthesis class W p... [more]
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