TCONS_00014440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014440
Unique NameTCONS_00014440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length561

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014440 ID=TCONS_00014440|Name=TCONS_00014440|organism=Clytia hemisphaerica|type=transcript|length=561bp
AATCAACCCACGGCGATCCACGAAACGCCAAAACAAAATACCAAATCGAT
GCCAATGCTGAATTCCATTCCTCCATGAAATCAAAATACTTGAAGGGCTT
GAGCTTTGGAATTCAAATTAGTGGTGTAAACCTCGAATTTATCAAGATCC
ATTTTCTGCATGATGACAATCAGTGCCACCACGAGCCTGAAAGTGGTTTG
GATTACATTTCAACCGAGATGAAGAGGTTAGCTCAGAAAATGCCAGGAGA
GACTGAACCTTTTTATGAAAACAAAGTGGTAGCTCTTGATAACCATCGAT
GCAAGAATGAAGATTTTCTGATGCACTCAATCGAGCTGACTTACATGGAG
GGTGCAAACGACCGGTCAGTTTTCCGAACCACTATTAAATGGGAATTTCA
TGATGGTCTTTTACACAGTACTCTACATACAGTCACTGCCTTActcaaat
ttgaagattttgtgaAAATTCTTTTCAACTGACTTTCTTCTCACCATATT
CTTTGTAAACTTTAATTCTTATTATATTTTCCATAATAATTCAGTTCTCG
TAAAGTAAGAC
Run BLAST on NCBI

protein sequence of TCONS_00014440-protein

>TCONS_00014440-protein ID=TCONS_00014440-protein|Name=TCONS_00014440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
STHGDPRNAKTKYQIDANAEFHSSMKSKYLKGLSFGIQISGVNLEFIKIH
FLHDDNQCHHEPESGLDYISTEMKRLAQKMPGETEPFYENKVVALDNHRC
KNEDFLMHSIELTYMEGANDRSVFRTTIKWEFHDGLLHSTLHTVTALLKF
EDFVKILFN
Run BLAST on NCBI

transcript from alignment at sc0000187:324385..325254-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014440 ID=TCONS_00014440|Name=TCONS_00014440|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at sc0000187:324385..325254- (Clytia hemisphaerica)
AATCAACCCACGGCGATCCACGAAACGCCAAAACAAAATACCAAATCGAT
GCCAATGCTGAATTCCATTCCTCCATGAAATCAAAATACTTGAAGGGCTT
GAGCTTTGGAATTCAAATTAGTGGTGTAAACCTCGAATTTATCAAGATCC
ATTTTCTGCATGATGACAATCAGTGCCACCACGAGGTAACACTTGTCTTT
TTTTATTTGAGGAAAAAGTAATGGAAAGAAATAAACTGAAATTCATTGTT
TTTTTCGATTAAGTAAGAAAAGCAACCAACCATTTTTAATTGATGTAGCT
TTCTCGACATCCTTAACTTAGCTATATGGTTTGATCAGTCCCGTTAACGC
CCTAAATTGATAGCTTCCTCAATGTATAAGTATTTTATGTNTATTTGGTT
TGATCAGTCCCGTTAACACCCTAAATCGATAGCTTCCTCGATGTACAAGT
ATTTTACGCTTTTTGCAAAATCTAATTTCTTCTTTTATTTACAGCCTGAA
AGTGGTTTGGATTACATTTCAACCGAGATGAAGAGGTTAGCTCAGAAAAT
GCCAGGAGAGACTGAACCTTTTTATGAAAACAAAGTGGTAGCTCTTGATA
ACCATCGATGCAAGAATGAAGATTTTCTGATGCACTCAATCGAGCTGACT
TACATGGAGGGTGCAAACGACCGGTCAGTTTTCCGAACCACTATTAAATG
GGAATTTCATGATGGTCTTTTACACAGTACTCTACATACAGTCACTGCCT
TACTCAAATTTGAAGATTTTGTGAAAATTCTTTTCAACTGACTTTCTTCT
CACCATATTCTTTGTAAACTTTAATTCTTATTATATTTTCCATAATAATT
CAGTTCTCGTAAAGTAAGAC

Coding sequence (CDS) from alignment at sc0000187:324385..325254-

>TCONS_00014440 ID=TCONS_00014440|Name=TCONS_00014440|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at sc0000187:324385..325254- (Clytia hemisphaerica)
CCTGAAAGTGGTTTGGATTACATTTCAACCGAGATGAAGAGGTTAGCTCA
GAAAATGCCAGGAGAGACTGAACCTTTTTATGAAAACAAAGTGGTAGCTC
TTGATAACCATCGATGCAAGAATGAAGATTTTCTGATGCACTCAATCGAG
CTGACTTACATGGAGGGTGCAAACGACCGGTCAGTTTTCCGAACCACTAT
TAAATGGGAATTTCATGATGGTCTTTTACACAGTACTCTACATACAGTCA
CTGCCTTACTCAAATTTGAAGATTTTGTGAAAATTCTTTTCAACTGATCA
ACCCACGGCGATCCACGAAACGCCAAAACAAAATACCAAATCGATGCCAA
TGCTGAATTCCATTCCTCCATGAAATCAAAATACTTGAAGGGCTTGAGCT
TTGGAATTCAAATTAGTGGTGTAAACCTCGAATTTATCAAGATCCATTTT
CTGCATGATGACAATCAGTGCCACCACGAGCCTGAAAGTGGTTTGGATTA
CATTTCAACCGAGATGAAGAGGTTAGCTCAGAAAATGCCAGGAGAGACTG
AACCTTTTTATGAAAACAAAGTGGTAGCTCTTGATAACCATCGATGCAAG
AATGAAGATTTTCTGATGCACTCAATCGAGCTGACTTACATGGAGGGTGC
AAACGACCGGTCAGTTTTCCGAACCACTATTAAATGGGAATTTCATGATG
GTCTTTTACACAGTACTCTACATACAGTCACTGCCTTACTCAAATTTGAA
GATTTTGTGAAAATTCTTTTCAACTGATCAACCCACGGCGATCCACGAAA
CGCCAAAACAAAATACCAAATCGATGCCAATGCTGAATTCCATTCCTCCA
TGAAATCAAAATACTTGAAGGGCTTGAGCTTTGGAATTCAAATTAGTGGT
GTAAACCTCGAATTTATCAAGATCCATTTTCTGCATGATGACAATCAGTG
CCACCACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008067XLOC_008067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014440-proteinTCONS_00014440-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014440-exon-sc0000187-1575043694:325070..325254TCONS_00014440-exon-sc0000187-1575043694:325070..325254Clytia hemisphaericaexon
TCONS_00014440-exon-sc0000187-1575043694:324385..324760TCONS_00014440-exon-sc0000187-1575043694:324385..324760Clytia hemisphaericaexon
TCONS_00014440-exon-sc0000187-1510915933:325070..325254TCONS_00014440-exon-sc0000187-1510915933:325070..325254Clytia hemisphaericaexon
TCONS_00014440-exon-sc0000187-1510915933:324385..324760TCONS_00014440-exon-sc0000187-1510915933:324385..324760Clytia hemisphaericaexon
TCONS_00014440-exon-sc0000187-1491911889:325070..325254TCONS_00014440-exon-sc0000187-1491911889:325070..325254Clytia hemisphaericaexon
TCONS_00014440-exon-sc0000187-1491911889:324385..324760TCONS_00014440-exon-sc0000187-1491911889:324385..324760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:324385..325254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100789	0.19657	0	0.111647	0.407759	0.107406	0.907062	2.18361	2.36216	2.19496	2.04226	5.06121	0.737348	0.69613	0.670207	0.592361	0	0.155102	0.107141	0.336346	0.119143	0.427788	0.346688	0.31519	0.432851	0.676041	0	0.294985	0.335604	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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