TCONS_00014439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014439
Unique NameTCONS_00014439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014439 ID=TCONS_00014439|Name=TCONS_00014439|organism=Clytia hemisphaerica|type=transcript|length=1428bp
TTTCTCTTCACTGTAtaggtccgatttcaaaggtcTAATTTTGGGCCaca
cgtacggtcgtttttgaatcgagccCCTCCCCGACTTCCCCCAGGATCTT
AGACGATTCTCACTTTGATATTCTATTGTTTTGTTCTTGTTAACAcacaa
aaacttgtaactttaAGATCTTGCTTTTCGAGGAGGATTTTTTACTACAA
ACCATTGAAGTAATCtacaggcaaaatatctcaaactaTTTGATCTTTAA
TACCAGATCAACATCACATATTCTTACAAATTGCCAAGTTTATAATATCT
GTAATATCGTCCTAAGAATTTAATATGTTATTCCTCCTCCTTCTTTACAT
CACACAAGCTTTCTAAACAAAATGTTGGATTCTTGTTCTGAAAGCAAGCC
ATTAGTTGTTCTAAATGTTTTACACGCAGTAAACCATAAAAGCCCATGGA
GTTTTGTACCACAGTGGTAATCGATTCTATGTTCAGCATTATCAAATTAT
AACGGATATTTAATAGGCCAATCATCGTCCAGTATTCATTTAGAAATCTG
CAAAATACTTTTGTTTTTGGGTTCATTGGCGTATACTGGAACAACTGATT
TGACGGCTCCGTCCATTTGGCagataaaaatcataaagaaaacaAGCCAA
ACTCTTTATTAAATTCTCAACTCgccattttcaaaagatttccatgtttt
gttttaaagtttcgCAACTTTTCACCATTGTGGAAGCCAACGTTCGATTT
ATGTAAGGGATCATCTCTAcaaattcgaatgtttgcttccataatggcgg
aaataaCTTTATTTAGATGATTTTCGGTCAACCAACTCTTTCTTCTTTCA
TTAatccagctggttttaaacctgCAAACAACCTCAAACCTTTAACGTCC
ATATGACGTTAGAAAAACGTCCATATGATGTTGAACAAATGTTCAAGTGA
CGTTAGACAAACGTTCATACGACGTTGAGCAAACGTGCAATTGACGTTAG
ACAAACGACCATATGACGTTAGACAAGGGTCCACATGACGTTAGACAAGG
GTCCACGTTATGTTAGACAAACGTTCAAATGACGTTCATTGATCGTATTG
GTGATTATTATTCTCCTCATCTACCTCATCTTCAAATTTCATGTTATTGT
GTTCAGCAATCAAAGGTAAATTATTTGGTCGCCTCATTGGTGTTTCACCG
CCATGACTTAGCAATTCTGCCGATTGGTCCGAATCTAAACCAGAATAAGA
ATGTGTAATTTGTATgctttacacccctgtgtcacagatccgGTGGGGCC
CCAAacccactgggaaatttgatcaaaatttcgTACCAAGCGGGAAAAAT
ACTCCAAAATTTtagggaaattgactttgatttcatccccattcgaaatt
caatgcaaaaaattgcacttcaaaacaa
Run BLAST on NCBI

transcript from alignment at sc0000187:302493..304501-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014439 ID=TCONS_00014439|Name=TCONS_00014439|organism=Clytia hemisphaerica|type=transcript|length=2009bp|location=Sequence derived from alignment at sc0000187:302493..304501- (Clytia hemisphaerica)
TTTCTCTTCACTGTATAGGTCCGATTTCAAAGGTCTAATTTTGGGCCACA
CGTACGGTCGTTTTTGAATCGAGCCCCTCCCCGACTTCCCCCAGGATCTT
AGACGATTCTCACTTTGATATTCTATTGTTTTGTTCTTGTTAACACACAA
AAACTTGTAACTTTAAGATCTTGCTTTTCGAGGAGGATTTTTTACTACAA
ACCATTGAAGTAATCTACAGGCAAAATATCTCAAACTATTTGATCTTTAA
TACCAGATCAACATCACATATTCTTACAAATTGCCAAGTTTATAATATCT
GTAATATCGTCCTAAGAATTTAATATGTTATTCCTCCTCCTTCTTTACAT
CACACAAGCTTTCTAAACAAAATGTTGGATTCTTGTTCTGAAAGCAAGCC
ATTAGTTGTTCTAAATGTTTTACACGCAGTAAACCATAAAAGCCCATGGA
GTTTTGTACCACAGTGGTAATCGATTCTATGTTCAGCATTATCAAATTAT
AACGGATATTTAATAGGCCAATCATCGTCCAGTATTCATTTAGAAATCTG
CAAAATACTTTTGTTTTTGGGTTCATTGGCGTATACTGGAACAACTGATT
TGACGGCTCCGTCCATTTGGCAGATAAAAATCATAAAGAAAACAAGCCAA
ACTCTTTATTAAATTCTCAACTCGCCATTTTCAAAAGATTTCCATGTTTT
GTTTTAAAGTTTCGCAACTTTTCACCATTGTGGAAGCCAACGTTCGATTT
ATGTAAGGGATCATCTCTACAAATTCGAATGTTTGCTTCCATAATGGCGG
AAATAACTTTATTTAGATGATTTTCGGTCAACCAACTCTTTCTTCTTTCA
TTAATCCAGCTGGTTTTAAACCTGCAAACAACCTCAAACCTTTAACGTCC
ATATGACGTTAGAAAAACATTCATATGACGTTAGACAAACGTACAAGTGA
CGTTAGACAAACGTACAAGTGACGTTAGACAAACGTACAAGTGACGTTAG
ACAAACGTCCATATGATGCTAAACAAATGTTCAAGTGACATTAGACAAAC
GTGCATACGACGTTGAGCAAACGACCATATGACGTTAGACAAACGTACAA
GTGACGTTAGACAAACGTCCATATGATGTTGAACAAATGTTCAAGTGACG
TTAGACAAACGTTCATACGACGTTGAGCAAACGTGCAATTGACGTTAGAC
AAACGACCATATGACGTTAGACAAGGGTCCACATGACGTTAGACAAGGGT
CCACATGACGTTAGACAAACGTTCAAATGACGTTCATTGATCGTATTGGT
GATTATTATTCTCCTCATCTTCCTCATCTTCAAATTTCATGTTATTGTGT
TCAGCAATCAAAGGTAAATTATTTGGTCGCCTCATAGGTGTTTCACCACC
ACCATGGCTCAATGATTCTGTTGATTGGTCCGAATCTAAACAAAAGTAAA
AATGTTTCATTGGTATTCTTTACACCCCTGTGTCACAGATCCGGTGGGCC
CCAAACCCACTGGGAAATTTGATCAAAATTTCGTACCAAGCGGGAAAAAT
ACTCCAAAATTTTAGGGAAATTGACTTTGACTTCATCCCCATTCGAAATT
CAATGCAAAAAATTGCNGACGTTAGACAAGGGTCCACGTTATGTTAGACA
AACGTTCAAATGACGTTCATTGATCGTATTGGTGATTATTATTCTCCTCA
TCTACCTCATCTTCAAATTTCATGTTATTGTGTTCAGCAATCAAAGGTAA
ATTATTTGGTCGCCTCATTGGTGTTTCACCGCCATGACTTAGCAATTCTG
CCGATTGGTCCGAATCTAAACCAGAATAAGAATGTGTAATTTGTATGCTT
TACACCCCTGTGTCACAGATCCGGTGGGGCCCCAAACCCACTGGGAAATT
TGATCAAAATTTCGTACCAAGCGGGAAAAATACTCCAAAATTTTAGGGAA
ATTGACTTTGATTTCATCCCCATTCGAAATTCAATGCAAAAAATTGCACT
TCAAAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008066XLOC_008066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014439-exon-sc0000187-1575043694:303584..304501TCONS_00014439-exon-sc0000187-1575043694:303584..304501Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1575043694:303248..303385TCONS_00014439-exon-sc0000187-1575043694:303248..303385Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1575043694:302493..302864TCONS_00014439-exon-sc0000187-1575043694:302493..302864Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1510915933:303584..304501TCONS_00014439-exon-sc0000187-1510915933:303584..304501Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1510915933:303248..303385TCONS_00014439-exon-sc0000187-1510915933:303248..303385Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1510915933:302493..302864TCONS_00014439-exon-sc0000187-1510915933:302493..302864Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1491911889:303584..304501TCONS_00014439-exon-sc0000187-1491911889:303584..304501Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1491911889:303248..303385TCONS_00014439-exon-sc0000187-1491911889:303248..303385Clytia hemisphaericaexon
TCONS_00014439-exon-sc0000187-1491911889:302493..302864TCONS_00014439-exon-sc0000187-1491911889:302493..302864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:302493..304501 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351119	0	0	0.0105148	0.0254247	0	0	0.1408	0.122639	0	0.176946	0.116766	0.29026	0.458714	0	0.0603666	0	0.143497	1.40375	0.297068	0	0	0.61468	0.369789	0.246822	0	0.838209	0.160881	0.0543959	0.225689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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