TCONS_00014431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014431
Unique NameTCONS_00014431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014431 ID=TCONS_00014431|Name=TCONS_00014431|organism=Clytia hemisphaerica|type=transcript|length=535bp
aatgcaaaatatttcatcatttttgatttttcaaattgtaTGTCCTCCCG
GATATCCATGAGTTGTCCATGAACCCCCTTGGATATCCACAAAAATAATA
TGCCAAATCCGCTGAGTCTCCCACACAGACAAGATCCGGGATCCCGTGCG
CGTTAACATGAACCTTACTCAACAATGATTTTAGCATGAGAAAACAATAT
GTTCTATTTGTGATATCAAAGTGACGTTCAGAAGATGTTGAGAATGGACC
AAATCGTGTTGTATCATTAATGGAAAATTTTGCACGCACCTAGTGTGAAA
TATATCATAGGAACCTATTTTTTGCAAAACATCTCTTGAAATTAGGACCT
AGCCCCCTATTTATGAGCTAAACCATATTTAATATTTACTATTGTCATTT
TGAGATCTATTGTTGATCGTCGCTGAAAGGCTAATtacgaatttgaaaaa
tattatctATGATAGAGAGCtgacatattcaattttcacccCATATATAG
ATTTAAAGAACTCCTATGTAGGAGGGATGTTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000187:271849..274293-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014431 ID=TCONS_00014431|Name=TCONS_00014431|organism=Clytia hemisphaerica|type=transcript|length=2445bp|location=Sequence derived from alignment at sc0000187:271849..274293- (Clytia hemisphaerica)
AATGCAAAATATTTCATCATTTTTGATTTTTCAAATTGTATGTCCTCCCG
GATATCCATGAGTTGTCCATGAACCCCCTTGGATATCCACAAAAATAATA
TGCCAAATCCGCTGGTAATCCAACTTTTTTTTGATTTTGTATCTCGCTTT
GGATGTCCTTTTGGATGTCCTTCTCAAAACCCCATACAATTTTTTTCTGG
GAGCCCCCTCTTTCTAGAAAAGGGGTGGTAGAGCCTCCTCAAAAATCACA
AAAAGGGAGGGAGGGATACTGTAAGTAATAACGGTTTTCAAAAGAATTGG
AAAGGAGAGTAAGGGGTAAAGGAAGGGTATAGAAAATTTGATAAAAAAGC
TTTTTAAGCTATTGGCCAAGAAATTTACGGGAAAGCTTCTTTCAGACAAG
CTTCAGAACTTTTTTTTCGGTTAAGTAAAGACCCCACTGCACACTATGAG
TCAGAAAATTATTTGCAACAACTTTTTAATATCAATTTGAGATATGACAT
TGTCTTGAGTAGACATTACGATTACGTAGCGACGCTTACCTCGTTTTCAA
AATATTGCTACGGTAATTGATTCCCAGAGGAGTTCATAATAAGTTTACTT
GATTTATAAAAGAAACACTTGACGACTGAAGGGATTAAATTAGCTGGTAA
TGGTTTCAAAACGAGGCAGCTGGTAATGGTTTCAAAGCGAGGCAGCTGGT
AATGGTTTCAAAGCGAGGCAGCTGGTAATGGTTTCAAAACGAGGCAGCCG
CTACACTCAAAATACAGTAGACTCTCATTAATTCGAACTTCTGTAATTTG
AAACTTTCTATAATTTGAACAATTTGTCCTCCTCCTTCAGACAAATTCTC
TCGCTAACTCGAATTTTTAATGTGTAAAGGGGTTTGAACTCATTCGAATG
CTATAAAGATTTGAAATTTATATTTAATTTTTTTTATTAAATACGAAATT
TTCAATTCGAATATTAGAGCGGGCTTATTGAATATTTATATCAAGATTTT
AAAAGTTATTTTTAGCAGGGGGGTCGGTAGTAAAATCTCGTACATATATG
AGTAGTAAAAGGATTTTTACGAATTTTTACATACCACCGCCCAGACTCTT
GGAAGAGGTATTTTATTACCCTGGTAGTAAAAGCTTTTGGGACAATTTGT
CCTAAAGACCACCTATTTTTTGGTTGCTTTTCGGACTGATTTTACAAAAG
AAGCTAAAAAATGATTATTTCTGTGACACATTTTTCACTTTGTGCAAAAA
TTAATGTTTTGCCCTTAGAATTAAATTCTTTTTTATATTGACAAAAAATC
TCGAGAATTTTTTGTTTGCAGCAAGCAACTTTCGAACAGAAATTTTTTTC
AAGTTTTCAGATTTTTTCAGAAAAATCATCCAAAAAATTAAAAAGAATTA
CAAAAATAGCTAAAATTTGCTAAATTTACCAGTTTTAACTACCCAGGTAG
TAAAATTTTTTCAACATTTAACACATAAACCACCCATTTTAGTATTTAAT
TACCCTGGGTAGTAAATTTTTTCGATTTTTCGTCACACCACCACCGTAGT
AAACATCATTATGTCTGAGATTTTACTACCGACCCCCCTCCCCCCCCCCT
GTTTTTAGCGTTCGTGAATTAACGTTTTATTCAACTTTTTATCTCGATCA
TTTTTAATCATTTAAAGTTTTCTCCGTAATTCGATTTTTTAGCTTGCTTA
AGCTGGTTATTCGAGTTGGAGAGACTTTCTACAATTCAAATTTTTCTGTA
ATTCGAATAAATTATTTCCCCCCACCTTGAAATTCGAATTAGAGAAAGTC
TACTGTAACAGATGAAAAAGTTCTATAGTCACAAAGTGCCTCAAGACCTT
GTCGGAAATCCTCAAAAAAAACAACAATTTAATTGACTTAACAGACAATC
TAACATGGCTTATCTAAATATAAAAGTTAAAGCTTACACATTGAATATTA
GGTACAAAAAGGTTTAAAAAATGAACGCTAGATAAGTATTAATATTATGT
TACTATTTTTAACATCTTTTTTAGAGTCTCCCACACAGACAAGATCCGGG
ATCCCGTGCGCGTTAACATGAACCTTACTCAACAATGATTTTAGCATGAG
AAAACAATATGTTCTATTTGTGATATCAAAGTGACGTTCAGAAGATGTTG
AGAATGGACCAAATCGTGTTGTATCATTAATGGAAAATTTTGCACGCACC
TAGTGTGAAATATATCATAGGAACCTATTTTTTGCAAAACATCTCTTGAA
ATTAGGACCTAGCCCCCTATTTATGAGCTAAACCATATTTAATATTTACT
ATTGTCATTTTGAGATCTATTGTTGATCGTCGCTGAAAGGCTAATTACGA
ATTTGAAAAATATTATCTATGATAGAGAGCTGACATATTCAATTTTCACC
CCATATATAGATTTAAAGAACTCCTATGTAGGAGGGATGTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008065XLOC_008065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014431-exon-sc0000187-1575043694:274180..274293TCONS_00014431-exon-sc0000187-1575043694:274180..274293Clytia hemisphaericaexon
TCONS_00014431-exon-sc0000187-1575043694:271849..272269TCONS_00014431-exon-sc0000187-1575043694:271849..272269Clytia hemisphaericaexon
TCONS_00014431-exon-sc0000187-1510915933:274180..274293TCONS_00014431-exon-sc0000187-1510915933:274180..274293Clytia hemisphaericaexon
TCONS_00014431-exon-sc0000187-1510915933:271849..272269TCONS_00014431-exon-sc0000187-1510915933:271849..272269Clytia hemisphaericaexon
TCONS_00014431-exon-sc0000187-1491911889:274180..274293TCONS_00014431-exon-sc0000187-1491911889:274180..274293Clytia hemisphaericaexon
TCONS_00014431-exon-sc0000187-1491911889:271849..272269TCONS_00014431-exon-sc0000187-1491911889:271849..272269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:271849..274293 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.215821	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.31018	0	0	0	0	0	0	0	0.229925	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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