TCONS_00014420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014420
Unique NameTCONS_00014420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014420 ID=TCONS_00014420|Name=TCONS_00014420|organism=Clytia hemisphaerica|type=transcript|length=3173bp
AAAATGGTATAACataaaaaataagtaaaatcaaagatgcacgctttttt
tataagaatagtgcaCTTTGGATGAgcgtcaagtattcttaagaaattgc
caaaatgtattcttactttttagtcttgacttttttacaaacatgagaac
tgatcaatttgagagttttggacttttgaatgaacatttggagctaaaat
tacatttctgcctTAAAGTTTAAACTCAAATCTAACAAAGCAtgaacaaa
ggaagcagttttttttctgttaaccaaatacaaaatgactgtatttttat
caaattctgtgaaactcatcctctagagggtattcttaggcaATTTTCAc
catgatattcttatagaagatattcttataaaaaaagcgtgaatTTTTTT
ACAGCGTGATGACGGTaaggataatttcaaaaatGTCCATTCAAtatata
taaagaaaaattaaaaatgaagagATATTTTTGAAAGCATAGTTGAAATC
ATGTGGCAAATTTTTACATTTAGCTTATGATCACTTGGATCATCATAAAT
CTTATAGTCATCGATAAAGAAGGATGAGATTGCTGGCACATAATCAAAAT
CACTGTCAACCTTAATGTTAATTTTCTTCAACAGTAAATTCCAAATCTCT
CTGGCAGCTTTTACAGGTGATAAATCCATATCAGGATCATTATTTAGTAC
ATGGAAAAGACATGTTTTTAAGTAATAAGACGATAGTACATCTTCCGGTT
TTATTTTGTCATAATTACTTTGAATTAACGGACACCATTCTCGAATAGCC
TTAGCCAGTCTATATCCCATACGATATTGAGGTGGACAACCTTTTAGAat
ctttgtttcaatttttgaaaaagatgcGCGAACAGTTCcgtttattttgg
ttttatcTTCCTCAATGTACTCAAAAGATGCTTTTAGAATTAGAAAACAG
CTTTCGTTTTTTGCCTCTTCGATAATCGGATTTTTGATGATTCGATCAAA
GCAAAATGGTGGTTGTTTGATGTTTATAGCAATGGCAAGATCAATAGATA
TTGGCATAAATTTTTGACTAGAATTCACCCAATAAAGTTTAATTGACGGT
ATTTGATTGTATCCTGTGTTTACACAGTTTCTCAAATAAAGTCCCAGATT
TTCAAAAGTGGTGTTCTTGGCGATTGCATAGTTGATGGCACGAACCATAC
CTTTCTTAAGTTTACCATGTAAAAGATATCTATCTTCAtcaaaaaatggt
ttcaaattatCATCAGCTCTGTCTTGCGATCGCACTTTAAAATAACCTGG
TGAGCAGTTTTCTTTAACAGCAATCAAACCATCACCAAAGTGATCAAGAA
AAAGCAAGTAATCGAATTCATCAGGATAAGTGACTTTTGTACCTTCACTG
ACACTGCCAGACAAAACAGGTGTAAATGAAAGTTTAGGATAATTCTTTCG
AACTTCATCAGCAATACGAGATAGTAAGACTTTCACACTTTTAAATACTA
AACGGCAATGTTCGGAGCTTAAAATTATAGGCCGTCCAAGAAACAGCTGT
GTCCTCTCAATCAAAGATAATAGCCAACCTTCCCTTGAAAGCCAGTCATC
AATTTCACCATCCTCAAGGCATAGCCTATTACTTTGAATCGATGCTATGG
AGTATTTATACATTACAGGGAGCTCACAAACTGCAATTGCTTCTGAAGTT
AAACCAAAAATGTTTCTATGACCTTTGTTAGCTCCATATTGAATTAATAA
TGATTGGATTTCCGAAAAATTCGAACCATGGGCAAAAAACATTGGTGTTT
CTTCACAGGCGTTCTCTCTGTTAGCATTAGCCCCCTGCTCAAGAAGCAAC
cgtataatttcaatttttgatttagCGCAAGCAAGATGTAGTGCACTCAT
CTGGTTAGAATCAACAAAATTTGGATCAAATCCTCGATTTAAAAGCAATC
TTACACTATCTGCATTTTCCATAAAAATGCAATACATCAACAAATTCAAG
CCCAAGTAACTCTTACTTAAATCAGTGGAATCAAGTAAAAGCTCAATGTC
TTCTAAATTAAAATGTCTTTCAATTGAGACCATTAAAGGAGTTCGATAGC
TATCATCTGGTATATTGGCATCTGCACCCATTGCAAGTAACAACTTTTTA
AAACGATTGCTATCTTCAGACTCAGGATCTTTCGACTTTCGTTTTGGACA
TGAAGAAATCAATAGCGGAGTTGCACCAGATGCATTTATTTCATTGATGT
TAGCACCATGTTGAAGGAGTAATTGCAAAATATCTATCTCAGCCTGTTCA
CAATCAAAGGAAGGCGCATCGAATTGTTGTCTTTTTCCTACAAGATCTGT
AGACAAGACATGCAATGGTGCTTTTCCATAGTCCTTTCTATTTACCATCG
CACTGCTTTTATTGAGAATCACTTTCACGCAGGGATAACACAGACATTCA
ATAGCTACTTCTAAAGGTGACCTGTGGCCACTGTGAGAAACACATTCAGT
ATAATTATCACTTATTGCATACACGTCCGCATGGATTCCCTTGGCGATCA
ACTTCTTGATGATGGTAGTACACAACGGTTGTTGGTCATTTTGATGCAGT
ATTTCAATAACGTTTATCAATATAGTTGCTTGTGATTGTTCATCTCCGGT
ATTTGACTGAAAGTTTTCTGCCAATAAGTTGATCTTGATTAAACAATCTT
CAGAAATCGGGTCTCTCATATAATGTAACAACAAAACCATCgcatatttg
aaaatattattttctataAATTGATTCGCACCATGATTGAGtaataattt
cataattttggaTGAAACGTTAGATCCACAGGACCAAAACAACGCTGAGA
AACCTTGTCCACCCAAAACTCCAATACCGGGGTGTACCATTATCAAGTTT
GGATCAGCACCTTTTGATAACAAATAATCACAAATTTCATATTGGTTACA
AACAGCTGCAGCACTTAAAAGGTGCATTTTTTGGATTCCCAGGATTCCAT
AAAAATCGAACATATCATCGTAATAACGTGTTTTAATAAGAGCATTGACA
TCCAGTAAATCATTCTCAACCAGGTATTGTATTTTCGGGAGAAATCCATT
CTCTAACAATTTGTAAACATCATAGTTTGTATCCatgtttttgtttcttg
tttctacCTTTATTCCATATTAG
Run BLAST on NCBI

transcript from alignment at sc0000187:169863..174502-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014420 ID=TCONS_00014420|Name=TCONS_00014420|organism=Clytia hemisphaerica|type=transcript|length=4640bp|location=Sequence derived from alignment at sc0000187:169863..174502- (Clytia hemisphaerica)
AAAATGGTATAACATAAAAAATAAGTAAAATCAAAGATGCACGCTTTTTT
TATAAGAATAGTGCACTTTGGATGAGCGTCAAGTATTCTTAAGAAATTGC
CAAAATGTATTCTTACTTTTTAGTCTTGACTTTTTTACAAACATGAGAAC
TGATCAATTTGAGAGTTTTGGACTTTTGAATGAACATTTGGAGCTAAAAT
TACATTTCTGCCTTAAAGTTTAAACTCAAATCTAACAAAGCATGAACAAA
GGAAGCAGTTTTTTTTCTGTTAACCAAATACAAAATGACTGTATTTTTAT
CAAATTCTGTGAAACTCATCCTCTAGAGGGTATTCTTAGGCAATTTTCAC
CATGATATTCTTATAGAAGATATTCTTATAAAAAAAGCGTGAATTTTTTT
ACAGCGTGATGACGGTAAGGATAATTTCAAAAATGTCCATTCAATATATA
TAAAGAAAAATTAAAAATGAAGAGATATTTTTGAAAGCATAGTTGAAATC
ATGTGGCAAATTTTTACATTTAGCTTATGATCACTTGGATCATCATAAAT
CTTATAGTCATCGATAAAGAAGGATGAGATTGCTGGCACATAATCAAAAT
CACTGTCAACCTTAATGTTAATTTTCTTCAACAGTAAATTCCAAATCTCT
CTGGCAGCTTTTACAGGTGATAAATCCATATCAGGATCATTATTTAGTAC
ATGGAAAAGACATGTTTTTAAGTAATAAGACGATAGTACATCTTCCGGTT
TTATTTTGTCATAATTACTTTGAATTAACGGACACCATTCTCGAATAGCC
TTAGCCAGTCTATATCCCATACGATATTGAGGTGGACAACCTTTTAGAAT
CTTTGTTTCAATTTTTGAAAAAGATGCGCGAACAGTTCCGTTTATTTTGG
TTTTATCTTCCTCAATGTACTCAAAAGATGCTTTTAGAATTAGAAAACAG
CTTTCGTTTTTTGCCTCTTCGATAATCGGATTTTTGATGATTCGATCAAA
GCAAAATGGTGGTTGTTTGATGTTTATAGCAATGGCAAGATCAATAGATA
TTGGCATAAATTTTTGACTAGAATTCACCCAATAAAGTTTAATTGACGGT
ATTTGATTGTATCCTGTGTTTACACAGTTTCTCAAATAAAGTCCCAGATT
TTCAAAAGTGGTGTTCTTGGCGATTGCATAGTTGATGGCACGAACCATAC
CTTTCTTAAGTTTACCATGTAAAAGATATCTATCTTCATCAAAAAATGGT
TTCAAATTATCATCAGCTCTGTCTTGCGATCGCACTTTAAAATAACCTGG
TGAGCAGTTTTCTTTAACAGCAATCAAACCATCACCAAAGTGATCAAGAA
AAAGCAAGTAATCGAATTCATCAGGATAAGTGACTTTTGTACCTTCACTG
ACACTGCCAGACAAAACAGGTGTAAATGAAAGTTTAGGATAATTCTTTCG
AACTTCATCAGCAATACGAGATAGTAAGACTTTCACACTTTTAAATACTA
AACGGCAATGTTCGGAGCTTAAAATTATAGGCCGTCCAAGAAACAGCTGT
GTCCTCTCAATCAAAGATAATAGCCAACCTTCCCTTGAAAGCCAGTCATC
AATTTCACCATCCTCAAGGCATAGCCTATTACTTTGAATCGATGCTATGG
AGTATTTATACATTACAGGGAGCTCACAAACTGCAATTGCTTCTGAAGTT
AAACCAAAAATGTTTCTATGACCTTTGTTAGCTCCATATTGAATTAATAA
TGATTGGATTTCCGAAAAATTCGAACCATGGGCAAAAAACATTGGTGTTT
CTTCACAGGCGTTCTCTCTGTTAGCATTAGCCCCCTGCTCAAGAAGCAAC
CGTATAATTTCAATTTTTGATTTAGCGCAAGCAAGATGTAGTGCACTCAT
CTGGTTAGAATCAACAAAATTTGGATCAAATCCTCGATTTAAAAGCAATC
TTACACTATCTGCATTTTCCATAAAAATGCAATACATCAACAAATTCAAG
CCCAAGTAACTCTTACTTAAATCAGTGGAATCAAGTAAAAGCTCAATGTC
TTCTAAATTAAAATGTCTTTCAATTGAGACCATTAAAGGAGTTCGATAGC
TATCATCTGGTATATTGGCATCTGCACCCATTGCAAGTAACAACTTTTTA
AAACGATTGCTATCTTCAGACTCAGGATCTTTCGACTTTCGTTTTGGACA
TGAAGAAATCAATAGCGGAGTTGCACCAGATGCATTTATTTCATTGATGT
TAGCACCATGTTGAAGGAGTAATTGCAAAATATCTATCTCAGCCTGTTCA
CAATCAAAGGAAGGCGCATCGAATTGTTGTCTTTTTCCTACAAGATCTGT
AGACAAGACATGCAATGGTGCTTTTCCATAGTCCTTTCTATTTACCATCG
CACTGCTTTTATTGAGAATCACTTTCACGCAGGGATAACACAGACATTCA
ATAGCTACTTCTAAAGGTGACCTGTGGCCACTGTGAGAAACACATTCAGT
ATAATTATCACTTATTGCATACACGTCCGCATGGATTCCCTTGGCGATCA
ACTTCTTGATGATGGTAGTACACAACGGTTGTTGGTCATTTTGATGCAGT
ATTTCAATAACGTTTATCAATATAGTTGCTTGTGATTGTTCATCTCCGGT
ATTTGACTGAAAGTTTTCTGCCAATAAGTTGATCTTGATTAAACAATCTT
CAGAAATCGGGTCTCTCATATAATGTAACAACAAAACCATCGCATATTTG
AAAATATTATTTTCTATAAATTGATTCGCACCATGATTGAGTAATAATTT
CATAATTTTGGATGAAACGTTAGATCCACAGGACCAAAACAACGCTGAGA
AACCTTGTCCACCCAAAACTCCAATACCGGGGTGTACCATTATCAAGTTT
GGATCAGCACCTTTTGATAACAAATAATCACAAATTTCATATTGGTTACA
AACAGCTGCAGCACTTAAAAGGTGCATTTTTTGGATTCCCAGGATTCCAT
AAAAATCGAACATATCATCGTAATAACGTGTTTTAATAAGAGCATTGACA
TCCAGTAAATCATTCTCAACCAGGTATTGTATTTTCGGGAGAAATCCATT
CTCTAACAATTTGTAAACATTATAGTTTGTATCCATGTTTTTGTTTCTTG
TTTCTACCTTTATTCCATATTAGTATCTCTAAAAACAGAAGAGAGGTCTT
AAAAATTGCAAAACAAAACAAAGAGGTGCTACAAAAGCCAAAAGAGAGGC
AATCCGTATTGTGAGTACGCAGTGAAGGGATGAAGAGGAAGTTCAACAAA
AGCGTACTCGTGTTTTATAGATGACGGCATTTCTATTGTTCTCTGTGTAC
AAGGTAGTAAGTTAAGAAATGGCACGGTCAATGTCCTTTTTTCAATGAAA
TAATAATTAATATATACTATAAAATCTATAAAAAATTCGTGTTACAAAGT
TATATCCATGAATTATAAAAAAACCTTTCTAATTAACAAAAATAATAAAA
GTGAAAAACTCACAAAGGATTCTCAAGAATAAGTGCTTCTAAAATCTACT
AAATATCAACTACAAAAATCTACAAAATTCGAGTTAGAAAAATATCATAT
AAAATGCTACTCTAAACAATTCATATACAAATAAGGTCCAATTTAAGCTC
AAAATAACACGAGTCTTACTTTCAGCTATTTTATTCCAGTAATTTGAACA
CAAATTGGGTGATTGATGATGATTCATCCATCATCTTTTCAATGATACTG
AAATGATCTTCATCAGGAACAATTTCCAAAGAAACATATGTTGATTTCCT
GGATAACTTCTCATACATTTTCATGGACTGATAATGGAATATTGGTGATT
CATCACTGCCAACGAATAACTTGATCTCAATCTTGGTGATTTCATTGTAA
TTTCTTAAAAGTAGATTCTGAGAAGGTAAATCAGATTTGTCGATAGCACT
TGCAACACTGGTAAGTGAAAAATCATCCAGTTGAAAGATACCAGAGATTG
AAATAATTCCTTTAATACGTGAAACCAAATCAGGAAAACTCATTAATGAT
GTAACTAGGTAGGCACCAGCTGAATGTCCAGAAAGAATAAATCGAGATTT
CGGATATCTGTTTATCAAAAATTGAAATCCTTTAACACATTGTTGTTCAA
TGCTTGGGATTTTGTGTACATCAGAGCTAAGATCATATCCAAATATAGCC
ACAATACATCGTTTGTTAAGGTATGGTTTAGCAATGCCATGATAATATGA
TCGATCACCTTCCTGCCAATTTCCACCATGAATATAAACAAAGATTGGAA
GTCCATCTAAATCCTCCTCGGCAATATCACCAGTATAAAATAAATCAATT
TTCTCTCGTTCAGATTCACCATATGGTACATTCAGCTCAGATTTAAAATG
TTTTTCCACGTATTTAGTACCTTCGGTAAGCTTTGATAAGAAATGTGGAA
TGATTTCATCTTTTGTGTGCTTTCGACTCCAATTGGATGGCATATGATAC
CATTCAAAACATTGTTTGACATCTGTTGATGAAAATAACATGTTCTTTTG
TAATCAACCTGTAAAAAAATTNTCAATTTGTAAACATCATAGTTTGTATC
CATGTTTTTGTTTCTTGTTTCTACCTTTATTCCATATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008061XLOC_008061Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014420-exon-sc0000187-1575043694:171385..174502TCONS_00014420-exon-sc0000187-1575043694:171385..174502Clytia hemisphaericaexon
TCONS_00014420-exon-sc0000187-1575043694:169863..169917TCONS_00014420-exon-sc0000187-1575043694:169863..169917Clytia hemisphaericaexon
TCONS_00014420-exon-sc0000187-1510915933:171385..174502TCONS_00014420-exon-sc0000187-1510915933:171385..174502Clytia hemisphaericaexon
TCONS_00014420-exon-sc0000187-1510915933:169863..169917TCONS_00014420-exon-sc0000187-1510915933:169863..169917Clytia hemisphaericaexon
TCONS_00014420-exon-sc0000187-1491911889:171385..174502TCONS_00014420-exon-sc0000187-1491911889:171385..174502Clytia hemisphaericaexon
TCONS_00014420-exon-sc0000187-1491911889:169863..169917TCONS_00014420-exon-sc0000187-1491911889:169863..169917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:169863..174502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16276	0.978042	0.667815	0.663363	1.53345	1.02043	1.69276	1.56126	0.786748	1.08696	0.840813	0.719698	0.931387	0.553898	1.17508	1.15784	1.66232	1.19933	0.585299	0.482434	0.793196	0.723503	1.43764	1.92951	1.93336	2.16044	0.473883	0.679342	0.880649	1.08426
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR024810Mab-21_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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