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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014402 ID=TCONS_00014402|Name=TCONS_00014402|organism=Clytia hemisphaerica|type=transcript|length=1969bp
ATCTCAAGTACATGCACCTTGTCAATTTTCGAAGCAACTCTATGGCGTCA
TTTTTGTAATGGCCTTTCAATTTGTTTCGTTCGCCGCGCTCTTACATAAC
TGTTTGTGCTGACTTCAGAAGGAAAGAGTATAAAATGCAAGACTATGGTG
GAAGTCGATCAGTTTCATAAAGTAGTCTAAAGAAATCATTCATTGAAGAA
ACAGTTTTAATTATATTAGGTCGTTGAAATTCTTTAAACATGGATGCTAA
GCAAAcAATGGCCGACTTCAAGAACGACATTCTTAAAACACACAACACAT
ACCGTAAAACACATCGATCCAACCCTCTCAAATGGTCCAATAAGCTTCAA
GCCAACGCCCAAAGATGGGCGGATAAACTAGCAAAGAAGGGATATCTCCA
GCATGAAAACCAGTCAGATGAGGGAGAAAATATCGCTTGTATGAAGGGAG
CAGAGCTGACTGGTGAACGAGCTGCAACCATGTGGTACGATGAAGTCAAA
TATTATGATTACAGTAAACCAACATTCAGCTCCAAGACAGGACATTTTAC
ACAGCTTGTATGGAACGGATCAACTGAGCTTGGTGTAGGCCGCGCGACCG
CTTCAAACGGTATGCAATTTGTCGTCGCTCGATATAATCCACCCGGAAAC
ATCCTTGGAAAATTCCCAGACAACGTCTTTTCATCAAACGGTAAACCGCC
ACCAACGACGTCAAgcaacaatagcaacaataacCGGACGACAAGAAACA
AGCCTGAAAAACGGCAACAACAACCATCCAGTGATAAACAAACTGACAAA
GATTTCAAGAATGCTGTCTTACGTACGCATAACCAATTACGTAAGCATCA
CGGCTCAGGCCCACTACGTTGGAACAGTTCTCTGGCTAGCCAAGCGTTAA
GTGCGGCACAAGAGGCGGCTGAAACCAACACTCTACGCTCAGTGGATAAC
AACAAAGTGGGTCAAAATATGGCAGCGATTTCCGGAGCTGAATTAACGGG
TGAAAAAGTTTCCAACATGTGGTATGATgaggaaaagaaatataattATA
GAGAAGCCAAATTCAGTTCAAGTACAGGAAGTTTCACACAACTTGTTTGG
AAAGGGACAACCGATCTTGGTGTGGGTAGAGCTTTCGGACCTAACGGACA
AACGTATGTTGTAGCTTTATACCAACCAGCGGGAAATGTTAGAGGACTTT
ACAGTGAAAACGTTTTACAATCACGTGGTACGAGGCCTGGGTCCAAGAAA
GAGGATCAAGGGTGTGGCTGTGCCATCATGTAACACCTTCCAAATCAAAG
ATAATCTGATGTTTTGCTGACTaataggaaaaattattttcaaaatgggg
ACAGCTAAAAGTATGGCGATTCCTTCAAATGACAATCGCCTTAAGTAGGC
GTTCACTTTAAATGGCGGATAGCTGCCaaaagtttacttgaaatagaCGG
CCATGATAGATATCGTTAAGAAAATATGATATTCTTTGAATTTGGGTAGA
ACAAAGTTCATTTTTGATGAATATTCTGAAGACTGTCAAATAACTCGACT
CTCAAGGTTGATTTAACCGGCAGGGAAACGTTTTTCTAGCGTTACTTTGG
CTAAGGGACTAAACTTGCTTGATTTATCCTTTTTTTTATCCACCATTATT
GCTATGAACTGTATATGTATATCCAAATGTCAGAAAATTTTACAAACGAT
CTAAAATTTTATGCTGGttcttaaaaatttagtttAGTTTTATGCATACA
GTATAaccttttctttgaaaattcattaatattaataaaattgaaaacat
tttttgatttatgatttgaTTTATAAATTAACGGCTAATTTTATAGCTAA
TGTTCTTAAGTCTGataatttttgtagatattaTGATTTTTTCCGGAGAA
AGTTAATTTTCACGGAAcctttttgtatattttatttataGTTGATGATT
TTTTGGGATAATAAATCAG Run BLAST on NCBI transcript from alignment at sc0000187:439234..445621+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014402 ID=TCONS_00014402|Name=TCONS_00014402|organism=Clytia hemisphaerica|type=transcript|length=6388bp|location=Sequence derived from alignment at sc0000187:439234..445621+ (Clytia hemisphaerica)
ATCTCAAGTACATGCACCTTGTCAATTTTCGAAGCAACTCTATGGCGTCA
TTTTTGTAATGGCCTTTCAATTTGTTTCGTTCGCCGCGCTCTTACATAAC
TGTTTGTGCTGACTTCAGAAGGAAAGAGTATAAAATGCAAGACTATGGTG
GAAGTCGATCAGTTTCATAAAGTAGTCTAAAGAAATCATTCATTGAAGAA
ACAGTTTTAATTATATTAGGTCGTTGAAATTCTTTAAACATGGATGCTAA
GCAAAGTAAGTATTTGATTTTAGCCGATTTGAAAAAAAGGAACCcgtttc
tttctgtttttttcAGGGTATGGTATATTGGTCTCATTTAGTATCTGTCC
ATTATCCGACGCACGAAACTATAGAATTCTTTAGGATTTGGTCAACGATA
GCTAGATTCAAACCATTCGTTCgttcaaaagaaaaaggctGCTGTTTAGG
GATGTTTGAAATATGATGAAATCTTTCGCTGTTGGAGCTCTCATAGATGG
CTGTAAAGtttgtaaaaatgtaaaaagaacATTCTAGAAAACTCCAAGCT
TGCTGTTTCTACTTTGTATAGATTATTGATGACGTTTTTGAACAGATATT
CAAGATCGTGCTATTTTGCGGGGTCAAAGTAATTAGGATTTTTTTGCGGT
ACAAATTTTCCTGTTTCAGCAATAAACCTACGCCTTAAATTCACAGAGAC
CTTTTTTATGTTACGCTTAAAAAGTATTGACTCATATGTATTCAATATTA
GCTtgtttttcaattaaaatttcttttgatttctgTCTTGACTACCAAAA
CTAAAGTTTTGTCCAAAACCCGTTTATCTTGGTTGGACATATTCTGTGTT
GGTTGATATCCCGGAATAAAAGATTTGTTTTGATGGAAAGTTTCAAAGAA
TGCGGAAATTTTCATATTGAAgtcaattttcttttcccaATCTAATTTCT
ACTGACTAATGTTTTTTTGATATAcgtaatattttgaatattactTTCGA
CTGTACTAATTCACTCCAAACTTTTATATGCATATCACAACTCATTGACG
TGCagaattttttctttcctttctacAATGCGTAGTATCCAGTAACATAC
TTCGAGCCTTTACGACTTAACAATAACCTTAGTATCGACCAATAGTATAA
GTCCGGTGCTGGTTATTAATTCAATTTTGCACAGTATGGAACCCGTTACT
TTTGAAAATCTCTGAATGACGCATTAGCCTGTACGTGCCTCTGGAAGAAA
AAAGCTCAAAAGCTATTTTcctatttcaaatttcaaaatgacgTGTTATA
TGTAGGTGTATAAATCCTATAAAACCTCTAGAAAATCCTTAAGAAGGCCA
TAAAGTACCAAATATTTGATTAAGACATACAAGTGATTTTGAAAGGATTT
TTGTTCAGGTAGGTTTATATTAGGATTACTAAGGACTTAAAATTGTGACA
AGTAAAAGGGGTTTTTAAATATTGCTGGGAAAATTCGAGATTTGAGTGGT
ATTGAGAGAAATAATGGAACGATATGATTGTTGGATAATTCCACGACTTG
TATATCATTTTCGTTTGATCCTCTATATATCATtatcaagaaaaattgaa
gtGAAAGTACCTAGCCACGATAGAATTATTAGagtttttgaatatatttt
gcaTTGCATGGTGAAGAAAAATGCAAATGTGTTTTGATCCGGAGATTATG
AAATGACATAGGGAGCACCTTGcgtttttgaatttgattttctttttgga
tCTAATCAATATTCTTCTTTGTTAAcatattgacaatttttttttattgt
agcAATGGCCGACTTCAAGAACGACATTCTTAAAACACACAACACATACC
GTAAAACACATCGATCCAACCCTCTCAAATGGTCCAATAAGCTTCAAGCC
AACGCCCAAAGATGGGCGGATAAACTAGCAAAGAAGGGATATCTCCAGCA
TGAAAACCAGTCAGATGAGGGAGAAAATATCGCTTGTATGAAGGGAGCAG
AGCTGACTGGTGAACGAGCTGCAACCATGTGGTACGATGAAGTCAAATAT
TATGATTACAGTAAACCAACATTCAGCTCCAAGACAGGACATTTTACACA
GGTATGCAGATTTTCATTTCTCTAATTACAAGCACGACGTACCGGGTACG
GCAGTCCGTCGGCCaccgtaccagattttcacgaaaaatcCTAAAATTAT
CCTCTTCTGTCGGAAAAATCGCTTAAACTCCTCATTCTCCGTACCAGATT
TAAAAAGCTTCCGTTGTGCCTGCTAATTATAATattcatgaaaatatttt
cataagcCATAAGAAAAGAGGACCAAATGTCGCTTCCAGATATATTTTTA
CCCAAAATTATAATTTTGGCTTGTACTGTTTGTGTCACTTTTAAACCTTT
TGGGGAGAAAGTTGACAGAGTCCAAGTTTCTCTGAGTACGACATTGCTGT
TAAAAATATACCTATCCTAGTTCCTGAGATTTCTGACAGATCTTAAGCAG
TGGAAATATTGTAATATTCTTTTTCTGCTCTATCTAGCTTGTATGGAACG
GATCAACTGAGCTTGGTGTAGGCCGCGCGACCGCTTCAAACGGTATGCAA
TTTGTCGTCGCTCGATATAATCCACCCGGAAACATCCTTGGAAAATTCCC
AGACAACGTCTTTTCATCAAACGGTAAACCGCCACCAACGACGTCAAgca
acaatagcaacaataacCGGACGACAAGAAACAAGCCTGAAAAACGGCAA
CAACAACCATCCAGTGATAAACAAAGTACGTATCTTGATGAAATATCTAA
GGGGCtcataaaaatgaaagtcaAACCTACGGGTGGACTAGCTCCACAGA
AGCCAACCAGTTCCACACCTAGAAATGGATTAGTGTTGCAACCACGGCAA
CCTGTTTCCGTTTCACTACCGACGACTGGTTTGGTAGTTCACCAACAAAA
AGCTACTACTTCCACTCCCGTACCAAAGGGTGGATTAATAGTTCATCAGT
ATACAACGACGACCGCTACTTCAGGCCCTAAAAGCAGCCTAATGGCTCAT
CAGCGCCACGAAGCTGGTCCTATTTCTGTCACCATTAAGACAGAACGTAG
AGAGGAGATAAGCTTCTTTCGAAGAATTTCACACGGGGGATAGAATGCTT
TTACATTGTTTTTAATAGTTAGTTATTATATCCAATGCGTTTCAAAGCGa
aggctagaagcgaatcttcaatctttcccAATCAAGAAAAAGCGGAGCCA
ATCTAgtactttattttgttttcgtttttaacatttttcaaaatttgcaa
tAGTAATGCTTTCAAGCAAGTAGTTTTAGATTATATTAACCTATCCTACC
TGTATATATGTTAACTTGACCATGGGATGTGACCaaactttctatgtttt
tttAATCTGGACGATCTTTATGTGAAAATTTGTTAACGCTCTAACAGAGT
TACTTGGACTTGGACATTActtattttataatttattaacaaaatctttc
aTTGTCTTGTCTTATATAAATACCCGTGAAAACTTTTTAACCGTTGTTTT
CGCCCCTTGTTTGTACTATAGTTTGTAATATTTTTATGTTGTACATATAA
CAAtgtatatttgaattttttttgagatatTTATCTTACGAAACATTTAC
GcttctgcaatattttttttacttgagaATTTTAAAACTGACTGTTAAAA
CTATACTGCTGACAACCAGTACCTCATAGAACTGTAACtgaaaaaacata
aaacaaaaaccATCTTTGAAATAAGACAGTTTCTGACCACACCCGTTTGA
TTTGACAACACAATACCATACAACATGCTATTCCGATCTTAGAGTATGTA
CAACATGCCTAGTTTCAGCCTCGAAAATTACTTGAATGAATAAACCATAA
TTTTGGCAAAACTGTTTCAGCTCTcattatttttaagaaaatgttcTATT
GAAAACTAAATTTGAACCAATAAATTAGAACGAAAATTGGGAAGTTTAAA
CACATTAGATATTATGGAATAATTCGttacaattttttgaaattttaata
caaaggaatttaaaaaaagaaaattacacAAAACTTTTTAACAGTTCAgc
ttgtatgcttataaattcTCCTTCCCCAAATCTCAGCTATAATCTCACTG
ATTATAattgttatgcttataaatgtgTTTTTGGTTCTCCAGTCTTCAAA
GAACACAGTTTTTCATACCtactttttatttaatttgaacaaattcTGAA
TCGCCCCTAAATACAGAGACACGTTCTTCGACGTTTTAACATTTTAACAG
AGGTTTTATTTAACAAAGTTCATGGTCTAATGAGGTTACTTTATTGACAG
CAGACTTTGACTTTAACGATATTTAGATCAAGAATTACTTAACGTGAATA
ACTTTGTttaaaatactaattttttttcagcttATCCGAGATTTCTAAAT
ATATGTATTAGATTTTCAAGGGATTTTCAACTCACTGACATTCCCAGAAG
GAATGCTTAAGAACTGTGACTTTTACTAATTTCGAGTCTCCAAAGACGCA
ATAACTTAATCAaaacgattttttataagaacagactatataagaacata
aggcttcgatggccaaaatgttaagtacaagttaagaacatttttaggct
ttaagaaaaaacttcaaaaattttggatgttcttattaaaaaaaccgTGT
ATTTCAATAAAACGTTTACTCTATCTATTTTAGCTGACAAAGATTTCAAG
AATGCTGTCTTACGTACGCATAACCAATTACGTAAGCATCACGGCTCAGG
CCCACTACGTTGGAACAGTTCTCTGGCTAGCCAAGCGTTAAGTGCGGCAC
AAGAGGCGGCTGAAACCAACACTCTACGCTCAGTGGATAACAACAAAGTG
GGTCAAAATATGGCAGCGATTTCCGGAGCTGAATTAACGGGTGAAAAAGT
TTCCAACATGTGGTATGATgaggaaaagaaatataattATAGAGAAGCCA
AATTCAGTTCAAGTACAGGTAAtgagcttttttataagaatcagtaaaCT
TTGACTGGCCctcctttgttcttatttttctttatctttatctTGAAGTA
CAGTGGAGTGTCTTTAACATAAACACGCACAAGGAACACTTTTTCGAGta
atggaaatttcaaattatggAGTAAGGCTAAGGCATtagctgaagggacc
ataaaaattgttcgagataaggagacattcgagttaaggagacattcgag
ttatggaggtttGAATTAAAGAGACTTAACTTAATTCTTGAATACAGTGG
AACCTGTCTAAAGCGGAAATTGTATAAAGCGGATATTTTTTTAGGACGGG
TACTTTCACACTCTCCTTGAGACGGTATATTTTAAGGTCAATCTCTCGTG
AAAGGTTTTGACATGGCTGGAAAGATTCTACATACTTTTAAGGTTAAAGA
TATTTACCAAAACTGTAttgaaatatttcttcttttgtATTTCCAGGAAG
TTTCACACAACTTGTTTGGAAAGGGACAACCGATCTTGGTGTGGGTAGAG
CTTTCGGACCTAACGGACAAACGTATGTTGTAGCTTTATACCAACCAGCG
GGAAATGTTAGAGGACTTTACAGTGAAAACGTTTTACAATCACGTGGTAC
GAGGCCTGGGTCCAAGAAAGAGGATCAAGGGTGTGGCTGTGCCATCATGT
AACACCTTCCAAATCAAAGATAATCTGATGTTTTGCTGACTaataggaaa
aattattttcaaaatggggACAGCTAAAAGTATGGCGATTCCTTCAAATG
ACAATCGCCTTAAGTAGGCGTTCACTTTAAATGGCGGATAGCTGCCaaaa
gtttacttgaaatagaCGGCCATGATAGATATCGTTAAGAAAATATGATA
TTCTTTGAATTTGGGTAGAACAAAGTTCATTTTTGATGAATATTCTGAAG
ACTGTCAAATAACTCGACTCTCAAGGTTGATTTAACCGGCAGGGAAACGT
TTTTCTAGCGTTACTTTGGCTAAGGGACTAAACTTGCTTGATTTATCCTT
TTTTTTATCCACCATTATTGCTATGAACTGTATATGTATATCCAAATGTC
AGAAAATTTTACAAACGATCTAAAATTTTATGCTGGttcttaaaaattta
gtttAGTTTTATGCATACAGTATAaccttttctttgaaaattcattaata
ttaataaaattgaaaacattttttgatttatgatttgaTTTATAAATTAA
CGGCTAATTTTATAGCTAATGTTCTTAAGTCTGataatttttgtagatat
taTGATTTTTTCCGGAGAAAGTTAATTTTCACGGAAcctttttgtatatt
ttatttataGTTGATGATTTTTTGGGATAATAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00014402-exon-sc0000187-1491911889:439234..439488 | TCONS_00014402-exon-sc0000187-1491911889:439234..439488 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1510915933:439234..439488 | TCONS_00014402-exon-sc0000187-1510915933:439234..439488 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1575043694:439234..439488 | TCONS_00014402-exon-sc0000187-1575043694:439234..439488 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1491911889:441036..441334 | TCONS_00014402-exon-sc0000187-1491911889:441036..441334 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1510915933:441036..441334 | TCONS_00014402-exon-sc0000187-1510915933:441036..441334 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1575043694:441036..441334 | TCONS_00014402-exon-sc0000187-1575043694:441036..441334 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1491911889:441771..442008 | TCONS_00014402-exon-sc0000187-1491911889:441771..442008 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1510915933:441771..442008 | TCONS_00014402-exon-sc0000187-1510915933:441771..442008 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1575043694:441771..442008 | TCONS_00014402-exon-sc0000187-1575043694:441771..442008 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1491911889:443967..444251 | TCONS_00014402-exon-sc0000187-1491911889:443967..444251 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1510915933:443967..444251 | TCONS_00014402-exon-sc0000187-1510915933:443967..444251 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1575043694:443967..444251 | TCONS_00014402-exon-sc0000187-1575043694:443967..444251 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1491911889:444730..445621 | TCONS_00014402-exon-sc0000187-1491911889:444730..445621 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1510915933:444730..445621 | TCONS_00014402-exon-sc0000187-1510915933:444730..445621 | Clytia hemisphaerica | exon |
| TCONS_00014402-exon-sc0000187-1575043694:444730..445621 | TCONS_00014402-exon-sc0000187-1575043694:444730..445621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000187 | supercontig | sc0000187:439234..445621 + |
Blast
BLAST of TCONS_00014402 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 2.104e-31 Identity = 63/149 (42.28%), Postives = 90/149 (60.40%), Query Frame = 3
Query: 249 KQTMADFKNDILKTHNTYRKTHRSNPLKWSNKLQANAQRWADKLAKKGYLQHENQSDEG---ENIACMKGAELTGERAATMWYDEVKYYDYSKPTFSSKTGHFTQLVWNGSTELGVGRATASNGMQFVVARYNPPGNIL--GKFPDNVF 680
K F N++LK HN YR+ H PLK L AQ++++ LA L+H +S G EN+A + TG+ A WY E+K Y++ +P F+S TGHFT +VW + ++GVG+A+AS+G FVVARY P GN++ G F +NV
Sbjct: 3 KSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLA-WASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVL 150 HSP 2 Score: 102.834 bits (255), Expect = 6.627e-25 Identity = 60/149 (40.27%), Postives = 88/149 (59.06%), Query Frame = 3
Query: 786 KQTDKDFKNAVLRTHNQLRKHHGSGPLRWNXXXXXXXXXXXXXXXXTNTLR---SVDNNKVGQNMAAISGAELTGEKVSNMWYDEEKKYNYREAKFSSSTGSFTQLVWKGTTDLGVGRAFGPNGQTYVVALYQPAGNV--RGLYSENVL 1217
K K F N VL+ HN+ R+ HG PL+ +L +A ++ A T L+ + G+N+A S + TG++V++ WY E K YN+++ F+S TG FT +VWK T +GVG+A +G ++VVA Y PAGNV G + ENVL
Sbjct: 3 KSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVL 150
The following BLAST results are available for this feature:
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