TCONS_00014402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014402
Unique NameTCONS_00014402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014402 ID=TCONS_00014402|Name=TCONS_00014402|organism=Clytia hemisphaerica|type=transcript|length=1969bp
ATCTCAAGTACATGCACCTTGTCAATTTTCGAAGCAACTCTATGGCGTCA
TTTTTGTAATGGCCTTTCAATTTGTTTCGTTCGCCGCGCTCTTACATAAC
TGTTTGTGCTGACTTCAGAAGGAAAGAGTATAAAATGCAAGACTATGGTG
GAAGTCGATCAGTTTCATAAAGTAGTCTAAAGAAATCATTCATTGAAGAA
ACAGTTTTAATTATATTAGGTCGTTGAAATTCTTTAAACATGGATGCTAA
GCAAAcAATGGCCGACTTCAAGAACGACATTCTTAAAACACACAACACAT
ACCGTAAAACACATCGATCCAACCCTCTCAAATGGTCCAATAAGCTTCAA
GCCAACGCCCAAAGATGGGCGGATAAACTAGCAAAGAAGGGATATCTCCA
GCATGAAAACCAGTCAGATGAGGGAGAAAATATCGCTTGTATGAAGGGAG
CAGAGCTGACTGGTGAACGAGCTGCAACCATGTGGTACGATGAAGTCAAA
TATTATGATTACAGTAAACCAACATTCAGCTCCAAGACAGGACATTTTAC
ACAGCTTGTATGGAACGGATCAACTGAGCTTGGTGTAGGCCGCGCGACCG
CTTCAAACGGTATGCAATTTGTCGTCGCTCGATATAATCCACCCGGAAAC
ATCCTTGGAAAATTCCCAGACAACGTCTTTTCATCAAACGGTAAACCGCC
ACCAACGACGTCAAgcaacaatagcaacaataacCGGACGACAAGAAACA
AGCCTGAAAAACGGCAACAACAACCATCCAGTGATAAACAAACTGACAAA
GATTTCAAGAATGCTGTCTTACGTACGCATAACCAATTACGTAAGCATCA
CGGCTCAGGCCCACTACGTTGGAACAGTTCTCTGGCTAGCCAAGCGTTAA
GTGCGGCACAAGAGGCGGCTGAAACCAACACTCTACGCTCAGTGGATAAC
AACAAAGTGGGTCAAAATATGGCAGCGATTTCCGGAGCTGAATTAACGGG
TGAAAAAGTTTCCAACATGTGGTATGATgaggaaaagaaatataattATA
GAGAAGCCAAATTCAGTTCAAGTACAGGAAGTTTCACACAACTTGTTTGG
AAAGGGACAACCGATCTTGGTGTGGGTAGAGCTTTCGGACCTAACGGACA
AACGTATGTTGTAGCTTTATACCAACCAGCGGGAAATGTTAGAGGACTTT
ACAGTGAAAACGTTTTACAATCACGTGGTACGAGGCCTGGGTCCAAGAAA
GAGGATCAAGGGTGTGGCTGTGCCATCATGTAACACCTTCCAAATCAAAG
ATAATCTGATGTTTTGCTGACTaataggaaaaattattttcaaaatgggg
ACAGCTAAAAGTATGGCGATTCCTTCAAATGACAATCGCCTTAAGTAGGC
GTTCACTTTAAATGGCGGATAGCTGCCaaaagtttacttgaaatagaCGG
CCATGATAGATATCGTTAAGAAAATATGATATTCTTTGAATTTGGGTAGA
ACAAAGTTCATTTTTGATGAATATTCTGAAGACTGTCAAATAACTCGACT
CTCAAGGTTGATTTAACCGGCAGGGAAACGTTTTTCTAGCGTTACTTTGG
CTAAGGGACTAAACTTGCTTGATTTATCCTTTTTTTTATCCACCATTATT
GCTATGAACTGTATATGTATATCCAAATGTCAGAAAATTTTACAAACGAT
CTAAAATTTTATGCTGGttcttaaaaatttagtttAGTTTTATGCATACA
GTATAaccttttctttgaaaattcattaatattaataaaattgaaaacat
tttttgatttatgatttgaTTTATAAATTAACGGCTAATTTTATAGCTAA
TGTTCTTAAGTCTGataatttttgtagatattaTGATTTTTTCCGGAGAA
AGTTAATTTTCACGGAAcctttttgtatattttatttataGTTGATGATT
TTTTGGGATAATAAATCAG
Run BLAST on NCBI

transcript from alignment at sc0000187:439234..445621+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014402 ID=TCONS_00014402|Name=TCONS_00014402|organism=Clytia hemisphaerica|type=transcript|length=6388bp|location=Sequence derived from alignment at sc0000187:439234..445621+ (Clytia hemisphaerica)
ATCTCAAGTACATGCACCTTGTCAATTTTCGAAGCAACTCTATGGCGTCA
TTTTTGTAATGGCCTTTCAATTTGTTTCGTTCGCCGCGCTCTTACATAAC
TGTTTGTGCTGACTTCAGAAGGAAAGAGTATAAAATGCAAGACTATGGTG
GAAGTCGATCAGTTTCATAAAGTAGTCTAAAGAAATCATTCATTGAAGAA
ACAGTTTTAATTATATTAGGTCGTTGAAATTCTTTAAACATGGATGCTAA
GCAAAGTAAGTATTTGATTTTAGCCGATTTGAAAAAAAGGAACCcgtttc
tttctgtttttttcAGGGTATGGTATATTGGTCTCATTTAGTATCTGTCC
ATTATCCGACGCACGAAACTATAGAATTCTTTAGGATTTGGTCAACGATA
GCTAGATTCAAACCATTCGTTCgttcaaaagaaaaaggctGCTGTTTAGG
GATGTTTGAAATATGATGAAATCTTTCGCTGTTGGAGCTCTCATAGATGG
CTGTAAAGtttgtaaaaatgtaaaaagaacATTCTAGAAAACTCCAAGCT
TGCTGTTTCTACTTTGTATAGATTATTGATGACGTTTTTGAACAGATATT
CAAGATCGTGCTATTTTGCGGGGTCAAAGTAATTAGGATTTTTTTGCGGT
ACAAATTTTCCTGTTTCAGCAATAAACCTACGCCTTAAATTCACAGAGAC
CTTTTTTATGTTACGCTTAAAAAGTATTGACTCATATGTATTCAATATTA
GCTtgtttttcaattaaaatttcttttgatttctgTCTTGACTACCAAAA
CTAAAGTTTTGTCCAAAACCCGTTTATCTTGGTTGGACATATTCTGTGTT
GGTTGATATCCCGGAATAAAAGATTTGTTTTGATGGAAAGTTTCAAAGAA
TGCGGAAATTTTCATATTGAAgtcaattttcttttcccaATCTAATTTCT
ACTGACTAATGTTTTTTTGATATAcgtaatattttgaatattactTTCGA
CTGTACTAATTCACTCCAAACTTTTATATGCATATCACAACTCATTGACG
TGCagaattttttctttcctttctacAATGCGTAGTATCCAGTAACATAC
TTCGAGCCTTTACGACTTAACAATAACCTTAGTATCGACCAATAGTATAA
GTCCGGTGCTGGTTATTAATTCAATTTTGCACAGTATGGAACCCGTTACT
TTTGAAAATCTCTGAATGACGCATTAGCCTGTACGTGCCTCTGGAAGAAA
AAAGCTCAAAAGCTATTTTcctatttcaaatttcaaaatgacgTGTTATA
TGTAGGTGTATAAATCCTATAAAACCTCTAGAAAATCCTTAAGAAGGCCA
TAAAGTACCAAATATTTGATTAAGACATACAAGTGATTTTGAAAGGATTT
TTGTTCAGGTAGGTTTATATTAGGATTACTAAGGACTTAAAATTGTGACA
AGTAAAAGGGGTTTTTAAATATTGCTGGGAAAATTCGAGATTTGAGTGGT
ATTGAGAGAAATAATGGAACGATATGATTGTTGGATAATTCCACGACTTG
TATATCATTTTCGTTTGATCCTCTATATATCATtatcaagaaaaattgaa
gtGAAAGTACCTAGCCACGATAGAATTATTAGagtttttgaatatatttt
gcaTTGCATGGTGAAGAAAAATGCAAATGTGTTTTGATCCGGAGATTATG
AAATGACATAGGGAGCACCTTGcgtttttgaatttgattttctttttgga
tCTAATCAATATTCTTCTTTGTTAAcatattgacaatttttttttattgt
agcAATGGCCGACTTCAAGAACGACATTCTTAAAACACACAACACATACC
GTAAAACACATCGATCCAACCCTCTCAAATGGTCCAATAAGCTTCAAGCC
AACGCCCAAAGATGGGCGGATAAACTAGCAAAGAAGGGATATCTCCAGCA
TGAAAACCAGTCAGATGAGGGAGAAAATATCGCTTGTATGAAGGGAGCAG
AGCTGACTGGTGAACGAGCTGCAACCATGTGGTACGATGAAGTCAAATAT
TATGATTACAGTAAACCAACATTCAGCTCCAAGACAGGACATTTTACACA
GGTATGCAGATTTTCATTTCTCTAATTACAAGCACGACGTACCGGGTACG
GCAGTCCGTCGGCCaccgtaccagattttcacgaaaaatcCTAAAATTAT
CCTCTTCTGTCGGAAAAATCGCTTAAACTCCTCATTCTCCGTACCAGATT
TAAAAAGCTTCCGTTGTGCCTGCTAATTATAATattcatgaaaatatttt
cataagcCATAAGAAAAGAGGACCAAATGTCGCTTCCAGATATATTTTTA
CCCAAAATTATAATTTTGGCTTGTACTGTTTGTGTCACTTTTAAACCTTT
TGGGGAGAAAGTTGACAGAGTCCAAGTTTCTCTGAGTACGACATTGCTGT
TAAAAATATACCTATCCTAGTTCCTGAGATTTCTGACAGATCTTAAGCAG
TGGAAATATTGTAATATTCTTTTTCTGCTCTATCTAGCTTGTATGGAACG
GATCAACTGAGCTTGGTGTAGGCCGCGCGACCGCTTCAAACGGTATGCAA
TTTGTCGTCGCTCGATATAATCCACCCGGAAACATCCTTGGAAAATTCCC
AGACAACGTCTTTTCATCAAACGGTAAACCGCCACCAACGACGTCAAgca
acaatagcaacaataacCGGACGACAAGAAACAAGCCTGAAAAACGGCAA
CAACAACCATCCAGTGATAAACAAAGTACGTATCTTGATGAAATATCTAA
GGGGCtcataaaaatgaaagtcaAACCTACGGGTGGACTAGCTCCACAGA
AGCCAACCAGTTCCACACCTAGAAATGGATTAGTGTTGCAACCACGGCAA
CCTGTTTCCGTTTCACTACCGACGACTGGTTTGGTAGTTCACCAACAAAA
AGCTACTACTTCCACTCCCGTACCAAAGGGTGGATTAATAGTTCATCAGT
ATACAACGACGACCGCTACTTCAGGCCCTAAAAGCAGCCTAATGGCTCAT
CAGCGCCACGAAGCTGGTCCTATTTCTGTCACCATTAAGACAGAACGTAG
AGAGGAGATAAGCTTCTTTCGAAGAATTTCACACGGGGGATAGAATGCTT
TTACATTGTTTTTAATAGTTAGTTATTATATCCAATGCGTTTCAAAGCGa
aggctagaagcgaatcttcaatctttcccAATCAAGAAAAAGCGGAGCCA
ATCTAgtactttattttgttttcgtttttaacatttttcaaaatttgcaa
tAGTAATGCTTTCAAGCAAGTAGTTTTAGATTATATTAACCTATCCTACC
TGTATATATGTTAACTTGACCATGGGATGTGACCaaactttctatgtttt
tttAATCTGGACGATCTTTATGTGAAAATTTGTTAACGCTCTAACAGAGT
TACTTGGACTTGGACATTActtattttataatttattaacaaaatctttc
aTTGTCTTGTCTTATATAAATACCCGTGAAAACTTTTTAACCGTTGTTTT
CGCCCCTTGTTTGTACTATAGTTTGTAATATTTTTATGTTGTACATATAA
CAAtgtatatttgaattttttttgagatatTTATCTTACGAAACATTTAC
GcttctgcaatattttttttacttgagaATTTTAAAACTGACTGTTAAAA
CTATACTGCTGACAACCAGTACCTCATAGAACTGTAACtgaaaaaacata
aaacaaaaaccATCTTTGAAATAAGACAGTTTCTGACCACACCCGTTTGA
TTTGACAACACAATACCATACAACATGCTATTCCGATCTTAGAGTATGTA
CAACATGCCTAGTTTCAGCCTCGAAAATTACTTGAATGAATAAACCATAA
TTTTGGCAAAACTGTTTCAGCTCTcattatttttaagaaaatgttcTATT
GAAAACTAAATTTGAACCAATAAATTAGAACGAAAATTGGGAAGTTTAAA
CACATTAGATATTATGGAATAATTCGttacaattttttgaaattttaata
caaaggaatttaaaaaaagaaaattacacAAAACTTTTTAACAGTTCAgc
ttgtatgcttataaattcTCCTTCCCCAAATCTCAGCTATAATCTCACTG
ATTATAattgttatgcttataaatgtgTTTTTGGTTCTCCAGTCTTCAAA
GAACACAGTTTTTCATACCtactttttatttaatttgaacaaattcTGAA
TCGCCCCTAAATACAGAGACACGTTCTTCGACGTTTTAACATTTTAACAG
AGGTTTTATTTAACAAAGTTCATGGTCTAATGAGGTTACTTTATTGACAG
CAGACTTTGACTTTAACGATATTTAGATCAAGAATTACTTAACGTGAATA
ACTTTGTttaaaatactaattttttttcagcttATCCGAGATTTCTAAAT
ATATGTATTAGATTTTCAAGGGATTTTCAACTCACTGACATTCCCAGAAG
GAATGCTTAAGAACTGTGACTTTTACTAATTTCGAGTCTCCAAAGACGCA
ATAACTTAATCAaaacgattttttataagaacagactatataagaacata
aggcttcgatggccaaaatgttaagtacaagttaagaacatttttaggct
ttaagaaaaaacttcaaaaattttggatgttcttattaaaaaaaccgTGT
ATTTCAATAAAACGTTTACTCTATCTATTTTAGCTGACAAAGATTTCAAG
AATGCTGTCTTACGTACGCATAACCAATTACGTAAGCATCACGGCTCAGG
CCCACTACGTTGGAACAGTTCTCTGGCTAGCCAAGCGTTAAGTGCGGCAC
AAGAGGCGGCTGAAACCAACACTCTACGCTCAGTGGATAACAACAAAGTG
GGTCAAAATATGGCAGCGATTTCCGGAGCTGAATTAACGGGTGAAAAAGT
TTCCAACATGTGGTATGATgaggaaaagaaatataattATAGAGAAGCCA
AATTCAGTTCAAGTACAGGTAAtgagcttttttataagaatcagtaaaCT
TTGACTGGCCctcctttgttcttatttttctttatctttatctTGAAGTA
CAGTGGAGTGTCTTTAACATAAACACGCACAAGGAACACTTTTTCGAGta
atggaaatttcaaattatggAGTAAGGCTAAGGCATtagctgaagggacc
ataaaaattgttcgagataaggagacattcgagttaaggagacattcgag
ttatggaggtttGAATTAAAGAGACTTAACTTAATTCTTGAATACAGTGG
AACCTGTCTAAAGCGGAAATTGTATAAAGCGGATATTTTTTTAGGACGGG
TACTTTCACACTCTCCTTGAGACGGTATATTTTAAGGTCAATCTCTCGTG
AAAGGTTTTGACATGGCTGGAAAGATTCTACATACTTTTAAGGTTAAAGA
TATTTACCAAAACTGTAttgaaatatttcttcttttgtATTTCCAGGAAG
TTTCACACAACTTGTTTGGAAAGGGACAACCGATCTTGGTGTGGGTAGAG
CTTTCGGACCTAACGGACAAACGTATGTTGTAGCTTTATACCAACCAGCG
GGAAATGTTAGAGGACTTTACAGTGAAAACGTTTTACAATCACGTGGTAC
GAGGCCTGGGTCCAAGAAAGAGGATCAAGGGTGTGGCTGTGCCATCATGT
AACACCTTCCAAATCAAAGATAATCTGATGTTTTGCTGACTaataggaaa
aattattttcaaaatggggACAGCTAAAAGTATGGCGATTCCTTCAAATG
ACAATCGCCTTAAGTAGGCGTTCACTTTAAATGGCGGATAGCTGCCaaaa
gtttacttgaaatagaCGGCCATGATAGATATCGTTAAGAAAATATGATA
TTCTTTGAATTTGGGTAGAACAAAGTTCATTTTTGATGAATATTCTGAAG
ACTGTCAAATAACTCGACTCTCAAGGTTGATTTAACCGGCAGGGAAACGT
TTTTCTAGCGTTACTTTGGCTAAGGGACTAAACTTGCTTGATTTATCCTT
TTTTTTATCCACCATTATTGCTATGAACTGTATATGTATATCCAAATGTC
AGAAAATTTTACAAACGATCTAAAATTTTATGCTGGttcttaaaaattta
gtttAGTTTTATGCATACAGTATAaccttttctttgaaaattcattaata
ttaataaaattgaaaacattttttgatttatgatttgaTTTATAAATTAA
CGGCTAATTTTATAGCTAATGTTCTTAAGTCTGataatttttgtagatat
taTGATTTTTTCCGGAGAAAGTTAATTTTCACGGAAcctttttgtatatt
ttatttataGTTGATGATTTTTTGGGATAATAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008057XLOC_008057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014402-exon-sc0000187-1491911889:439234..439488TCONS_00014402-exon-sc0000187-1491911889:439234..439488Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1510915933:439234..439488TCONS_00014402-exon-sc0000187-1510915933:439234..439488Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1575043694:439234..439488TCONS_00014402-exon-sc0000187-1575043694:439234..439488Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1491911889:441036..441334TCONS_00014402-exon-sc0000187-1491911889:441036..441334Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1510915933:441036..441334TCONS_00014402-exon-sc0000187-1510915933:441036..441334Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1575043694:441036..441334TCONS_00014402-exon-sc0000187-1575043694:441036..441334Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1491911889:441771..442008TCONS_00014402-exon-sc0000187-1491911889:441771..442008Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1510915933:441771..442008TCONS_00014402-exon-sc0000187-1510915933:441771..442008Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1575043694:441771..442008TCONS_00014402-exon-sc0000187-1575043694:441771..442008Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1491911889:443967..444251TCONS_00014402-exon-sc0000187-1491911889:443967..444251Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1510915933:443967..444251TCONS_00014402-exon-sc0000187-1510915933:443967..444251Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1575043694:443967..444251TCONS_00014402-exon-sc0000187-1575043694:443967..444251Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1491911889:444730..445621TCONS_00014402-exon-sc0000187-1491911889:444730..445621Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1510915933:444730..445621TCONS_00014402-exon-sc0000187-1510915933:444730..445621Clytia hemisphaericaexon
TCONS_00014402-exon-sc0000187-1575043694:444730..445621TCONS_00014402-exon-sc0000187-1575043694:444730..445621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:439234..445621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.203809	0	0	0	0	0	0.503973	1.07561	2.62706	12.8839	0.800254	9.0687	2.06719	1.25004	1.72052	1.59091	3.62559	1.58398	2.15072	5.08776	1.19689	0.673579	0.604231	0	0	0.6933	4.77194	3.95013	5.63825	2.76754
Blast
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BLAST of TCONS_00014402 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 2.104e-31
Identity = 63/149 (42.28%), Postives = 90/149 (60.40%), Query Frame = 3 
Query:  249 KQTMADFKNDILKTHNTYRKTHRSNPLKWSNKLQANAQRWADKLAKKGYLQHENQSDEG---ENIACMKGAELTGERAATMWYDEVKYYDYSKPTFSSKTGHFTQLVWNGSTELGVGRATASNGMQFVVARYNPPGNIL--GKFPDNVF 680
            K     F N++LK HN YR+ H   PLK    L   AQ++++ LA    L+H  +S  G   EN+A     + TG+  A  WY E+K Y++ +P F+S TGHFT +VW  + ++GVG+A+AS+G  FVVARY P GN++  G F +NV 
Sbjct:    3 KSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLA-WASYDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVL 150

HSP 2 Score: 102.834 bits (255), Expect = 6.627e-25
Identity = 60/149 (40.27%), Postives = 88/149 (59.06%), Query Frame = 3 
Query:  786 KQTDKDFKNAVLRTHNQLRKHHGSGPLRWNXXXXXXXXXXXXXXXXTNTLR---SVDNNKVGQNMAAISGAELTGEKVSNMWYDEEKKYNYREAKFSSSTGSFTQLVWKGTTDLGVGRAFGPNGQTYVVALYQPAGNV--RGLYSENVL 1217
            K   K F N VL+ HN+ R+ HG  PL+   +L  +A   ++  A T  L+        + G+N+A  S  + TG++V++ WY E K YN+++  F+S TG FT +VWK T  +GVG+A   +G ++VVA Y PAGNV   G + ENVL
Sbjct:    3 KSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADRWYSEIKNYNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVL 150
The following BLAST results are available for this feature:
BLAST of TCONS_00014402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR12.104e-3142.28Golgi-associated plant pathogenesis-related protei... [more]
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