TCONS_00014346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014346
Unique NameTCONS_00014346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014346 ID=TCONS_00014346|Name=TCONS_00014346|organism=Clytia hemisphaerica|type=transcript|length=292bp
CTGAAAATGCAACAATATGGCGGAAATCAAcgaaaattctaacaaggaaA
TTGAACAAAATTATGGATATTGCACACCCAATAACTGTTTAACAAACACC
ATCATAGCAGATAACGACACCTTACAATGTAGGAGATGCGATAGACTTGT
CCATTATGCTTGCTCTGAGCTCCCGGCCTATCAGATTCAGCTATGTCTGC
AATACAAAAGCCGGCGCTTCGAATGTGGAAATTGTGTTACAATAACGCCA
CTCTTACTTGAGAGGATTAAAACAAGCAGACAAAAAGCTCGC
Run BLAST on NCBI

transcript from alignment at sc0000185:202507..202798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014346 ID=TCONS_00014346|Name=TCONS_00014346|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0000185:202507..202798 (Clytia hemisphaerica)
GCGAGCTTTTTGTCTGCTTGTTTTAATCCTCTCAAGTAAGAGTGGCGTTA
TTGTAACACAATTTCCACATTCGAAGCGCCGGCTTTTGTATTGCAGACAT
AGCTGAATCTGATAGGCCGGGAGCTCAGAGCAAGCATAATGGACAAGTCT
ATCGCATCTCCTACATTGTAAGGTGTCGTTATCTGCTATGATGGTGTTTG
TTAAACAGTTATTGGGTGTGCAATATCCATAATTTTGTTCAATttccttg
ttagaattttcgTTGATTTCCGCCATATTGTTGCATTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008026XLOC_008026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014346-exon-sc0000185-1491911889:202507..202798TCONS_00014346-exon-sc0000185-1491911889:202507..202798Clytia hemisphaericaexon
TCONS_00014346-exon-sc0000185-1510915933:202507..202798TCONS_00014346-exon-sc0000185-1510915933:202507..202798Clytia hemisphaericaexon
TCONS_00014346-exon-sc0000185-1575043694:202507..202798TCONS_00014346-exon-sc0000185-1575043694:202507..202798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:202507..202798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69614	1.32147	0	1.11796e-05	0.767966	1.01717	0	0	1.99657	0	0	3.08626	3.20701	4.61312	0	0.409157	1.90472	0	1.71009	0	0	2.49462	0.8534	0.869296	0.82278	1.34628	0	0	0	2.1245
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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