|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014325 ID=TCONS_00014325|Name=TCONS_00014325|organism=Clytia hemisphaerica|type=transcript|length=1533bpRun BLAST on NCBI protein sequence of TCONS_00014325-protein >TCONS_00014325-protein ID=TCONS_00014325-protein|Name=TCONS_00014325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp AGPNAGQIILKDKIKLFDADKNMKRITTNNISKKNIRKKTKQANSNTDKHRun BLAST on NCBI transcript from alignment at sc0000185:294941..314892- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014325 ID=TCONS_00014325|Name=TCONS_00014325|organism=Clytia hemisphaerica|type=transcript|length=19952bp|location=Sequence derived from alignment at sc0000185:294941..314892- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000185:294941..314892- >TCONS_00014325 ID=TCONS_00014325|Name=TCONS_00014325|organism=Clytia hemisphaerica|type=CDS|length=22950bp|location=Sequence derived from alignment at sc0000185:294941..314892- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00014325 vs. Swiss-Prot (Human)
Match: SFI1 (Protein SFI1 homolog OS=Homo sapiens GN=SFI1 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.154e-25 Identity = 108/449 (24.05%), Postives = 210/449 (46.77%), Query Frame = 2
Query: 158 ETKEKVLLKKAFTQWKIVAFGSQVPSDSRKHYEQRLKEKYLKKWLGCLSEKKQLWKLEIRAEYHDRYRVWAGCLQRWXXXXXXXXXXXXXXXXATKHANKVLLSKTLRCFQQFIGICHHKKRMHDKAMLFYEVNLQRNNWRQWIKRYERSCLDKHLMYISLKQWSFKMQQKIFDKWKSEYXXXXXXXXXXXXXXXYNNTKSVKKTFSSWKSYIQYRRSKKKVQAIATTHYKETTKQNIFTYWRRRHKQVLNIKESEQQIEDMGKTFTKRRIFVHWKHYVTLQQYHKSCAEEAHSQYKISLK----KRLFLHWRQSASLVIKIN-EDINR--ANEFHSNMVQRNFFKVWMVELEKKEDLKNASLFDIADSYYRNKVFAKCIYGFVLHTKERKNIKRKNTLALNHFNSRIIPRYFSSWKHFITVQKNYQNLQIIAQKFNREIVYAKYFYQW 1483
E + + + +K W + FG PS +R +YEQRL K ++W + WKL +RA+ H RY ++ Q WK +V Q+E + A H K + + + + ++ + K +M A+ F + + R W W +R + + + L +LK + +Q + + +W+ + + Q+++ ++ ++ +W Y+Q RR K++ +A + T Q F W++ ++ ++ Q+E + + RR F HWKHY+ L CAEEA +Q++++ + +L+ +R V + + I R A++ H + F+ +W ++E+K++ + L A +YR + KCI ++ +T++R+ + A HF R +P F +W + L A +F+RE + + F W
Sbjct: 85 ELRIRCVARKFLYLWIRMTFGRVFPSKARFYYEQRLLRKVFEEWKEEWWVFQHEWKLCVRADCHYRYYLYNLMFQTWKTYVRQQQEMRNKYIRAEVHDAKQKMRQAWKSWLIYVVVRRTKLQMQTTALEFRQRIILRVWWSTWRQRLGQVRVSRALHASALKHRALSLQVQAWSQWREQLLYVQKEKQKVVSAVKHHQHWQKRRFLKAWLEYLQVRRVKRQQNEMAERFHHVTVLQIYFCDWQQAWERRESLYAHHAQVEKLARKMALRRAFTHWKHYMLL------CAEEA-AQFEMAEEHHRHSQLYFCFRALKDNVTHAHLQQIRRNLAHQQHGVTLLHRFWNLWRSQIEQKKERELLPLLHAAWDHYRIALLCKCIELWLQYTQKRRYKQLLQARADGHFQQRALPAAFHTWNRLWRWRHQENVLSARATRFHRETLEKQVFSLW 526 The following BLAST results are available for this feature:
BLAST of TCONS_00014325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.