TCONS_00014324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014324
Unique NameTCONS_00014324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014324 ID=TCONS_00014324|Name=TCONS_00014324|organism=Clytia hemisphaerica|type=transcript|length=646bp
gaaaaggctTGTAACCACGCTCAAACCAGATTAAACAGCAAGGTTTTCAT
TGCTTGGAAGGGTTACGTCGCTTCGAAGAAACAGCAATATCTTGTAGCTC
AACAAATGTACCAGGAGAAATGCAGTGTTTTATTGCGTTATTCAATCTTC
CAATGGAAAGAATTCGTCTTGCAACAAAAACATGAGAAACACCTGCTCTC
CCAAGCTCATGCTTTTCATCTACAATGGCTGAAGAAAAAGGCTTTttcat
ctttaaaattttatgcAAGGCAGAAGATCGAGCAAAGGTTTTGGGACGAT
GAAGCAACTATACGAACTCAAATAAGGATTGAAAATGCTTCCTTGAAAAG
ATGTTTCATTTATTGGAGGGAACAAACATCAATCCAACAAGAAGTCAATC
GAAAGACACAACTGGCACATCAACATCACGTTAAACAGCTGCAAAAGAAA
GCACTGTATGGATTGAAAGTCAACGTACACGCTCACTTAAGAAAGAAgGT
ATTACAAGGAAACTGTATGGTTTTTTACACATCTAAATtggaaaacaaat
attttgccCTTTGGTATGAGAAGACAACTGCAAGAAGAATACAGGAAAAT
GAacattgctttgttttggtggagCCTTCAACTTCAGAAAAAGGTC
Run BLAST on NCBI

transcript from alignment at sc0000185:289990..293021-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014324 ID=TCONS_00014324|Name=TCONS_00014324|organism=Clytia hemisphaerica|type=transcript|length=3032bp|location=Sequence derived from alignment at sc0000185:289990..293021- (Clytia hemisphaerica)
GAAAAGGCTTGTAACCACGCTCAAACCAGATTAAACAGCAAGGTTTTCAT
TGCTTGGAAGGTTTGTCGAAAGCTCTATTCGTCAAAAATATAGAATTCTT
AAATGATCAAAAGTGACCAAATTTTTATTGTCATTTTAACGAAATTAAGC
AAAATTCCATATGCTGGGGAAATTGTTTGAGATGCCCTCCCTGAACATCC
TTGTTGGCACGAAATGTTGTTTCAACGCTCATCTAACGTTAGATTGATAT
TTTGGACGTAAGATAGACGCAGTTTAATATTTTTGCCGGTTTTGAATTTT
TGTTTTCGTTTTCGGTATCTGTTGAATGACATTCACTCTCCTATGAGTCC
GCAGTCGACACTCTGTAATTTGGACAAATATAATTCCAATTCCTCTATAA
TTCGAATCTTTTTCTATTTCGAAGAAAATTATTGGTCCGGGAAGATCGAA
TTTAAGAGAGTATTCTTGTTATAGGGTTACGTCGCTTCGAAGAAACAGCA
ATATCTTGTAGCTCAACAAATGTACCAGGAGAAATGCAGTGTTTTATTGC
GTTATTCAATCTTCCAATGGAAAGAATTCGTCTTGCAACAAAAACATGAG
AAACACCTGCTCTCCCAAGCTCATGCTTTTCATCTACAATGGCTGAAGAA
AAAGGTTAATTATTTGTGCCACTCAGAATCAATGTATGGCCAAGTGCTAC
AGACGTCCTTTCTCCGGCGGATTTTCAACAATGTGTTTTACAATGCTCTA
AGTAAGGCTTGGTGAACAGTAGCGTGGTGGCAGGAGGGACAGGGGAGGCA
GTGTCCCCCCCAGCGGCCGATTTCTTTGAGGGGCGCCGAAATACAAAGGG
TGCAAAAAGACTTCTCTGATAACTTATATCGGCGCCCCTTTCCTCTTTTA
CACCTTAGATATGGCAGTTTTCGGGTTGTCAGTGAATATGAAATTCCAGA
CGATTTCCAAATTCTCATATTTGTTTTTACCAGTAAGGACTGTGAGCCTG
AATATCTAATGGTTTAATACCAACTCTGAACTACCCCCGTTTTCCTTTTA
GGCTTTTTCATCTTTAAAATTTTATGCAAGGCAGAAGATCGAGCAAAGGT
TTTGGGACGATGAAGCAACTATACGAACTCAAATAAGGATTGAAAATGGT
ATGGTGTTTTTCTCCCTTTAGTTTTAATTTATCTCTCATGTTTTCCATTG
CTTGTGTCTGGCCTATCAAATGGTTCAACGGCTCGATATTTCTTTAGGTT
TGTGTGTGTTCACTTAGTATTACTAAGTAAAGGCCGGTCTCCACTTGCGC
GCGGTTCGATCGCACATTTTCGAGCAAAGCTTCCACGCCATTGGTCAAAA
GAAAAACAAAGCAACTCCATTGGCGCGATCTGACGTAACGGTTGAGCGCG
CGCTACATTTTTATGACGTAATCTTTTTTCAAAGCAAAAAAGATTGAAGC
CAAAAAGTGCGATCGCAGCGTGTGCAAGTGGAGACCGGACTTATTTATGA
CCGAAGACCGAAGAAGTATTTGTGATTTTAAGTCATACATTAAATTTTCT
TTAAGCTTCCTTGAAAAGATGTTTCATTTATTGGAGGGAACAAACATCAA
TCCAACAAGAAGTCAATCGAAAGACACAACTGGCACATCAACATCACGTT
AAACAGCTGCAAAAGAAAGCACTGTATGGATTGAAAGTCAACGTACACGC
TCACTTAAGAAAGAAGGTATTTTTTGATTGAATTTCAATAGACCTTTTCA
TAAATTACGTCACGAACATCACTTGCTTCGTTTTGAAATTATTACCATGG
TGATTAACTCCCAGCGGATTTTATTAAAACTACTTTCTATTTATTAAAAA
AATCATTTTTTCTCAAGGGACATAATAACCATGGTAATTGTTTAAATACG
ATGCAAGTAATGTTCGTGACGTAATTTATGAAAAGGCATATACAGTTAAG
TTCCATAGCTCGAACACGCACGGGGAATACAAATTTGTTCGAGTTTAGGA
AATTTTGAGTCATGGAGTAAGGTTTCTTCAATACAGTTGAGTTTCAATGG
CTCAAGGGGAAAACAAAGTGTTTCGAGTTGACGAAATTTAGTGTTAAAAT
AGAGAAAACTTGTTCAAGTTAAGGATATATTTGAGCTATAGAGGTTCAAG
TTAAACAGACTCTACCGTAGTACTCGACGCAATCGAGATAAGAACAAAAT
GTCGATTGATAATTAGTCATAATTGCCTGAAATCTTTGTTATTGCTTTTT
ATTTCTGACAACGTGTCTCATATGATAAGTACTTATCCCCCCCCCCCCCC
GGGGGGGGGGGGAAAAATTTTTTTTATTAGAAACCCTTTTAAAAAAAAAA
AAAAAAAAAAAAATATTTTTTTTTTTTTTTTTTTTTTCTGAAAAATTGTT
TTTTTTTAAAAATTTTTTTCCCCCCCCCCCCGGGGGGGGGGGGAAAAATT
TTTTTTATTAGAAACCCTTTTAAAAAAAAAAAAAAAAAAAAAAATATTTT
TTTTTTTTTTTTTTTTTTCTCAAAGCGATTCTCATAAAAAAAGTTTTTCC
CCCCCCCCCCCGGAGGGGGCTACAAGATAAAATAAGATAAATTTTCAAGG
TTTTATATTTAAACTTGTTTTAGGTATTACAAGGAAACTGTATGGTTTTT
TACACATCTAAATTGGAAAACAAATATTTTGCCCTTTGGTATGAGAAGGT
AAGTATTTCGTCCAGAATGAAACCTGGGTCCAAACTCATAAGGCATTGCA
TTAACACACACACGGGCACATTCATGCATCAGACCACTGCAGTTTGTTAA
GGTTGTAGTGAATTGTTGTGATATGGATATGGATCTAATCATATCTGACA
AAATTCCTATAAAAACATGCCTTTTATCAATCGCAAACTTTCAGGCGCTA
TCAATGAGGTATTAATTATCAATTTTTGAAATTTAAAATTTAATTTTCGT
TCAGTACAGACAACTGCAAGAAGAATACAGGAAAATGAACATTGCTTTGT
TTTGGTGGAGCCTTCAACTTCAGAAAAAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008007XLOC_008007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014324-exon-sc0000185-1575043694:292962..293021TCONS_00014324-exon-sc0000185-1575043694:292962..293021Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1575043694:292368..292547TCONS_00014324-exon-sc0000185-1575043694:292368..292547Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1575043694:291874..291970TCONS_00014324-exon-sc0000185-1575043694:291874..291970Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1575043694:291306..291466TCONS_00014324-exon-sc0000185-1575043694:291306..291466Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1575043694:290324..290398TCONS_00014324-exon-sc0000185-1575043694:290324..290398Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1575043694:289990..290062TCONS_00014324-exon-sc0000185-1575043694:289990..290062Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1510915933:292962..293021TCONS_00014324-exon-sc0000185-1510915933:292962..293021Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1510915933:292368..292547TCONS_00014324-exon-sc0000185-1510915933:292368..292547Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1510915933:291874..291970TCONS_00014324-exon-sc0000185-1510915933:291874..291970Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1510915933:291306..291466TCONS_00014324-exon-sc0000185-1510915933:291306..291466Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1510915933:290324..290398TCONS_00014324-exon-sc0000185-1510915933:290324..290398Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1510915933:289990..290062TCONS_00014324-exon-sc0000185-1510915933:289990..290062Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1491911889:292962..293021TCONS_00014324-exon-sc0000185-1491911889:292962..293021Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1491911889:292368..292547TCONS_00014324-exon-sc0000185-1491911889:292368..292547Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1491911889:291874..291970TCONS_00014324-exon-sc0000185-1491911889:291874..291970Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1491911889:291306..291466TCONS_00014324-exon-sc0000185-1491911889:291306..291466Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1491911889:290324..290398TCONS_00014324-exon-sc0000185-1491911889:290324..290398Clytia hemisphaericaexon
TCONS_00014324-exon-sc0000185-1491911889:289990..290062TCONS_00014324-exon-sc0000185-1491911889:289990..290062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:289990..293021 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0005277	0	2.62434	0	0.391866	0.397156	0	1.48986	0.0192449	0.496448	0	0	0.575216	0	0.257152	0	0.321188	0	0	0	0	0	0	0	1.05757	0.954188	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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