TCONS_00014265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014265
Unique NameTCONS_00014265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014265 ID=TCONS_00014265|Name=TCONS_00014265|organism=Clytia hemisphaerica|type=transcript|length=487bp
TGAAAACTTGGCCTCGAAGGATGATGTTGCTGAGATCAAAGGCATCTTTA
ACAAGATTAATGAGAACATTTTGTATCAGGATAAGAAGATTGCCTCACTT
GAAAAAGAGTCTGTGGATCACGAGGAGAGAATTTCATTCCTTGAACAAAA
TTTGCTTATCCTTCAGGACAAAAATGCTGTTTTGAGTAGCacagtagact
tcttgactaaAAAAAGCGACGATCAAGAGCAGTATTCACGTAGGAGTTGT
TTAAGGATCAATGGAATCGAGAAAAGGGAAAACGAATCTAGTGCTGATTg
tgttaaaagtttaaaaaggtaATCGAAGTTTGTAAGGACATGGATGTTGC
TATTGAACCCAAAGACATTGACAGAGCTCACCGTGTAGGCAAAGAACGCA
GTACTATGATAGTCAAACTTTATTCTTTTGATAAACGTACATCGATCTAC
AAGGccagaaaaaaagcaaaaaataacatcaaaattt
Run BLAST on NCBI

protein sequence of TCONS_00014265-protein

>TCONS_00014265-protein ID=TCONS_00014265-protein|Name=TCONS_00014265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
ENLASKDDVAEIKGIFNKINENILYQDKKIASLEKESVDHEERISFLEQN
LLILQDKNAVLSSTVDFLTKKSDDQEQYSRRSCLRINGIEKRENESSADC
VKSLKR
Run BLAST on NCBI

transcript from alignment at sc0000183:374590..375076

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014265 ID=TCONS_00014265|Name=TCONS_00014265|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at sc0000183:374590..375076 (Clytia hemisphaerica)
aaattttgatgttattttttgctttttttctggCCTTGTAGATCGATGTA
CGTTTATCAAAAGAATAAAGTTTGACTATCATAGTACTGCGTTCTTTGCC
TACACGGTGAGCTCTGTCAATGTCTTTGGGTTCAATAGCAACATCCATGT
CCTTACAAACTTCGATtacctttttaaacttttaacacAATCAGCACTAG
ATTCGTTTTCCCTTTTCTCGATTCCATTGATCCTTAAACAACTCCTACGT
GAATACTGCTCTTGATCGTCGCTTTTTttagtcaagaagtctactgtGCT
ACTCAAAACAGCATTTTTGTCCTGAAGGATAAGCAAATTTTGTTCAAGGA
ATGAAATTCTCTCCTCGTGATCCACAGACTCTTTTTCAAGTGAGGCAATC
TTCTTATCCTGATACAAAATGTTCTCATTAATCTTGTTAAAGATGCCTTT
GATCTCAGCAACATCATCCTTCGAGGCCAAGTTTTCA

Coding sequence (CDS) from alignment at sc0000183:374590..375076

>TCONS_00014265 ID=TCONS_00014265|Name=TCONS_00014265|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000183:374590..375076 (Clytia hemisphaerica)
TtacctttttaaacttttaacacAATCAGCACTAGATTCGTTTTCCCTTT
TCTCGATTCCATTGATCCTTAAACAACTCCTACGTGAATACTGCTCTTGA
TCGTCGCTTTTTttagtcaagaagtctactgtGCTACTCAAAACAGCATT
TTTGTCCTGAAGGATAAGCAAATTTTGTTCAAGGAATGAAATTCTCTCCT
CGTGATCCACAGACTCTTTTTCAAGTGAGGCAATCTTCTTATCCTGATAC
AAAATGTTCTCATTAATCTTGTTAAAGATGCCTTTGATCTCAGCAACATC
ATCCTTCGAGGCCAAGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007978XLOC_007978Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014265-proteinTCONS_00014265-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014265-exon-sc0000183-1491911889:374590..375076TCONS_00014265-exon-sc0000183-1491911889:374590..375076Clytia hemisphaericaexon
TCONS_00014265-exon-sc0000183-1510915933:374590..375076TCONS_00014265-exon-sc0000183-1510915933:374590..375076Clytia hemisphaericaexon
TCONS_00014265-exon-sc0000183-1575043694:374590..375076TCONS_00014265-exon-sc0000183-1575043694:374590..375076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:374590..375076 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.579223	0	0.133207	0	0	0.132384	0.137482	0.144931	0	0	0.0981942	0	0	0.123388	0	0	0.26606	0.137018	0.650179	0.17308	0	0	0.144315
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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