TCONS_00014259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014259
Unique NameTCONS_00014259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014259 ID=TCONS_00014259|Name=TCONS_00014259|organism=Clytia hemisphaerica|type=transcript|length=450bp
aaaaattgccaaaatataTCGAATGTCAAAAATCCTTAAAAGtatctcaa
aatatttaaaaacttcGTAAACCTCCCCATCCAGTATTCACCTCTCGTAT
GCTTTCATAATTTTGACATACCTTGCTTAAAACCCAATACAGTACTAAAT
GATACATAACTCTTTCCCTTTTCATTGCGAGGTTGTTTTACATAACTCGA
TGAAAAAACATTAATTTGTTTGGCTTTACGTTTGATGAAATACCACAGTG
AATGCCCTAATCCATTGTTACGATGTTTTGGGTCCACATACAATGAACCA
ATTTCACCAGCGTAAGTTAGGGAAATCCAACCAACTAACTTGTCggaata
ttttgtaaaaataccTGGGAATAAGCCGAATAACAAACTAATTTTAAGCT
GGTCGCTTCGTAAAATGGGTTCTCGTCCAAACTGCTCTCTTAAATTCTCT
Run BLAST on NCBI

protein sequence of TCONS_00014259-protein

>TCONS_00014259-protein ID=TCONS_00014259-protein|Name=TCONS_00014259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
ENLREQFGREPILRSDQLKISLLFGLFPGIFTKYSDKLVGWISLTYAGEI
GSLYVDPKHRNNGLGHSLWYFIKRKAKQINVFSSSYVKQPRNEKGKSYVS
FSTVLGFKQGMSKL
Run BLAST on NCBI

transcript from alignment at sc0000183:115046..115495

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014259 ID=TCONS_00014259|Name=TCONS_00014259|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at sc0000183:115046..115495 (Clytia hemisphaerica)
AGAGAATTTAAGAGAGCAGTTTGGACGAGAACCCATTTTACGAAGCGACC
AGCTTAAAATTAGTTTGTTATTCGGCTTATTCCCAggtatttttacaaaa
tattccGACAAGTTAGTTGGTTGGATTTCCCTAACTTACGCTGGTGAAAT
TGGTTCATTGTATGTGGACCCAAAACATCGTAACAATGGATTAGGGCATT
CACTGTGGTATTTCATCAAACGTAAAGCCAAACAAATTAATGTTTTTTCA
TCGAGTTATGTAAAACAACCTCGCAATGAAAAGGGAAAGAGTTATGTATC
ATTTAGTACTGTATTGGGTTTTAAGCAAGGTATGTCAAAATTATGAAAGC
ATACGAGAGGTGAATACTGGATGGGGAGGTTTACgaagtttttaaatatt
ttgagataCTTTTAAGGATTTTTGACATTCGAtatattttggcaattttt

Coding sequence (CDS) from alignment at sc0000183:115046..115495

>TCONS_00014259 ID=TCONS_00014259|Name=TCONS_00014259|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000183:115046..115495 (Clytia hemisphaerica)
GAGAATTTAAGAGAGCAGTTTGGACGAGAACCCATTTTACGAAGCGACCA
GCTTAAAATTAGTTTGTTATTCGGCTTATTCCCAggtatttttacaaaat
attccGACAAGTTAGTTGGTTGGATTTCCCTAACTTACGCTGGTGAAATT
GGTTCATTGTATGTGGACCCAAAACATCGTAACAATGGATTAGGGCATTC
ACTGTGGTATTTCATCAAACGTAAAGCCAAACAAATTAATGTTTTTTCAT
CGAGTTATGTAAAACAACCTCGCAATGAAAAGGGAAAGAGTTATGTATCA
TTTAGTACTGTATTGGGTTTTAAGCAAGGTATGTCAAAATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007972XLOC_007972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014259-proteinTCONS_00014259-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014259-exon-sc0000183-1491911889:115046..115495TCONS_00014259-exon-sc0000183-1491911889:115046..115495Clytia hemisphaericaexon
TCONS_00014259-exon-sc0000183-1510915933:115046..115495TCONS_00014259-exon-sc0000183-1510915933:115046..115495Clytia hemisphaericaexon
TCONS_00014259-exon-sc0000183-1575043694:115046..115495TCONS_00014259-exon-sc0000183-1575043694:115046..115495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:115046..115495 .
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294421	0	1.00008	1.30456	0.198522	0	1.13557	1.41748	3.8456	4.91705	10.2909	3.33341	13.413	14.3362	12.7058	14.4427	0.221021	1.24597	0	0.327507	0.426995	0	0	0.306907	0.316107	0	4.0371	0.646275	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000182GNAT_dom
IPR016181Acyl_CoA_acyltransferase
Vocabulary: Molecular Function
TermDefinition
GO:0008080N-acetyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008080 N-acetyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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